Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:51:42 (3198357): wrapper (7.7.26015): starting
23:51:42 (3198357): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 23:51:42] Arguments: --nthreads 4
[2026-03-14 23:51:42] Threads: 4
[2026-03-14 23:51:42] Checking for CVMFS
[2026-03-14 23:51:42] No cvmfs_config command found, will try listing directly
[2026-03-14 23:51:42] CVMFS is ok
[2026-03-14 23:51:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 23:51:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 23:51:42] Further information can be found at the LHC@home message board.
[2026-03-14 23:51:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 23:51:42] Checking for apptainer binary...
[2026-03-14 23:51:42] which: no apptainer in ((null))
[2026-03-14 23:51:42] apptainer is not installed, using version from CVMFS
[2026-03-14 23:51:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 23:51:42] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot156/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-14 23:51:42] apptainer works
[2026-03-14 23:51:42] Set ATHENA_PROC_NUMBER=4
[2026-03-14 23:51:42] Set ATHENA_CORE_NUMBER=4
[2026-03-14 23:51:42] Starting ATLAS job with PandaID=7052859671
[2026-03-14 23:51:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot156/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 01:34:50]  *** The last 200 lines of the pilot log: ***
[2026-03-15 01:34:50] ]
[2026-03-15 01:34:50] 2026-03-15 00:31:08,724 | INFO     | transferring file log.48967085._016974.job.log.tgz.1 from /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7052859671/log.48967085._016974.job.log.tgz.1 to /var/lib/
[2026-03-15 01:34:50] 2026-03-15 00:31:08,724 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7052859671/log.48967085._016974.job.log.tgz.1 /var/lib/boinc/var/slot156/slots/0/
[2026-03-15 01:34:50] 2026-03-15 00:31:08,742 | INFO     | adding to output.list: log.48967085._016974.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/46/log.48967085._016974.job.log.tg
[2026-03-15 01:34:50] 2026-03-15 00:31:08,742 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-15 01:34:50] 2026-03-15 00:31:08,742 | INFO     | summary of transferred files:
[2026-03-15 01:34:50] 2026-03-15 00:31:08,743 | INFO     |  -- lfn=log.48967085._016974.job.log.tgz.1, status_code=0, status=transferred
[2026-03-15 01:34:50] 2026-03-15 00:31:08,743 | INFO     | stage-out finished correctly
[2026-03-15 01:34:50] 2026-03-15 00:31:09,134 | INFO     | time since job start (5954s) is within the limit (345600.0s)
[2026-03-15 01:34:50] 2026-03-15 00:31:10,464 | WARNING  | process 3217759 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 01:34:50] 2026-03-15 00:31:10,464 | INFO     | using path: /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7052859671/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 01:34:50] 2026-03-15 00:31:10,465 | INFO     | using path: /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7052859671/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 01:34:50] 2026-03-15 00:31:10,465 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-15 01:34:50] 2026-03-15 00:31:10,465 | WARNING  | maxPSS not found in memory monitor output
[2026-03-15 01:34:50] 2026-03-15 00:31:10,465 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 1998643 B
[2026-03-15 01:34:50] 2026-03-15 00:31:10,465 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15855 B
[2026-03-15 01:34:50] 2026-03-15 00:31:10,465 | INFO     | executing command: df -mP /var/lib/boinc/var/slot156/slots/0
[2026-03-15 01:34:50] 2026-03-15 00:31:10,481 | INFO     | sufficient remaining disk space (19778240512 B)
[2026-03-15 01:34:50] 2026-03-15 00:31:10,481 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-15 01:34:50] 2026-03-15 00:31:10,482 | INFO     | size of work directory /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7052859671: 2306670 B (within 5033164800 B limit)
[2026-03-15 01:34:50] 2026-03-15 00:31:10,482 | INFO     | pfn file=/var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7052859671/HITS.48967085._016974.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-15 01:34:50] 2026-03-15 00:31:10,482 | INFO     | total size of present files: 0 B (workdir size: 2306670 B)
[2026-03-15 01:34:50] 2026-03-15 00:31:10,482 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7052859671/HITS.48967085._016974.pool.root.1 since it does not exist
[2026-03-15 01:34:50] 2026-03-15 00:31:10,938 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-15 01:34:50] 2026-03-15 00:31:10,990 | INFO     | job 7052859671 has state=finished
[2026-03-15 01:34:50] 2026-03-15 00:31:10,992 | INFO     | preparing for final server update for job 7052859671 in state='finished'
[2026-03-15 01:34:50] 2026-03-15 00:31:11,019 | INFO     | number of running child processes to parent process 3217759: 1
[2026-03-15 01:34:50] 2026-03-15 00:31:11,020 | INFO     | maximum number of monitored processes: 6
[2026-03-15 01:34:50] 2026-03-15 00:31:11,140 | INFO     | time since job start (5956s) is within the limit (345600.0s)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,529 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,529 | INFO     | reading metadata from: /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7052859671/jobReport.json
[2026-03-15 01:34:50] 2026-03-15 00:31:11,530 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot156/slots/0/workernode_map.json
[2026-03-15 01:34:50] 2026-03-15 00:31:11,531 | INFO     | this job has now completed (state=finished)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,531 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,531 | INFO     | log transfer has been attempted: DONE
[2026-03-15 01:34:50] 2026-03-15 00:31:11,531 | INFO     | job 7052859671 has finished - writing final server update
[2026-03-15 01:34:50] 2026-03-15 00:31:11,531 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1893887/.job.ad'
[2026-03-15 01:34:50] 2026-03-15 00:31:11,531 | INFO     | total number of processed events: 400 (read)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,548 | INFO     | using path: /var/lib/boinc/var/slot156/slots/0/PanDA_Pilot-7052859671/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,549 | INFO     | extracted standard info from prmon json
[2026-03-15 01:34:50] 2026-03-15 00:31:11,549 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 01:34:50] 2026-03-15 00:31:11,549 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 01:34:50] 2026-03-15 00:31:11,549 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 01:34:50] 2026-03-15 00:31:11,549 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 01:34:50] 2026-03-15 00:31:11,550 | INFO     | fitting pss+swap vs Time
[2026-03-15 01:34:50] 2026-03-15 00:31:11,550 | INFO     | sum of square deviations: 233641590.0
[2026-03-15 01:34:50] 2026-03-15 00:31:11,551 | INFO     | sum of deviations: 971903971.9999999
[2026-03-15 01:34:50] 2026-03-15 00:31:11,551 | INFO     | mean x: 1773531786.0
[2026-03-15 01:34:50] 2026-03-15 00:31:11,551 | INFO     | mean y: 2329728.681318681
[2026-03-15 01:34:50] 2026-03-15 00:31:11,551 | INFO     | intersect: -7375220592.225391
[2026-03-15 01:34:50] 2026-03-15 00:31:11,551 | INFO     | chi2: 0.0001840730783489538
[2026-03-15 01:34:50] 2026-03-15 00:31:11,551 | INFO     | current memory leak: 4.16 B/s (using 91 data points, chi2=0.00)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | could have reported an average CPU frequency of 3599 MHz (7 samples)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | ..............................
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | . Timing measurements:
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | . get job = 0 s
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | . initial setup = 5 s
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | . payload setup = 5 s
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | . stage-in = 0 s
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | . payload execution = 5932 s
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | . stage-out = 0 s
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | . log creation = 0 s
[2026-03-15 01:34:50] 2026-03-15 00:31:11,554 | INFO     | ..............................
[2026-03-15 01:34:50] 2026-03-15 00:31:11,602 | INFO     | 
[2026-03-15 01:34:50] 2026-03-15 00:31:11,602 | INFO     | job summary report
[2026-03-15 01:34:50] 2026-03-15 00:31:11,602 | INFO     | --------------------------------------------------
[2026-03-15 01:34:50] 2026-03-15 00:31:11,602 | INFO     | PanDA job id: 7052859671
[2026-03-15 01:34:50] 2026-03-15 00:31:11,602 | INFO     | task id: 48967085
[2026-03-15 01:34:50] 2026-03-15 00:31:11,602 | INFO     | errors: (none)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,602 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 01:34:50] 2026-03-15 00:31:11,602 | INFO     | pilot state: finished 
[2026-03-15 01:34:50] 2026-03-15 00:31:11,602 | INFO     | transexitcode: 0
[2026-03-15 01:34:50] 2026-03-15 00:31:11,602 | INFO     | exeerrorcode: 0
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | exeerrordiag: 
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | exitcode: 0
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | exitmsg: OK
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | cpuconsumptiontime: 22769 s
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | nevents: 400
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | neventsw: 0
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | pid: 3217759
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | pgrp: 3217759
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | corecount: 4
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | event service: False
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | sizes: {0: 2280252, 11: 2280252, 5941: 2307041, 5943: 2316063, 5945: 2316341}
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | --------------------------------------------------
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | 
[2026-03-15 01:34:50] 2026-03-15 00:31:11,603 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot156/slots/0
[2026-03-15 01:34:50] 2026-03-15 00:31:11,621 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,622 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,622 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,622 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | job 7052859671 has completed (purged errors)
[2026-03-15 01:34:50] 2026-03-15 00:31:11,623 | INFO     | overall cleanup function is called
[2026-03-15 01:34:50] 2026-03-15 00:31:12,631 | INFO     | --- collectZombieJob: --- 10, [3217759]
[2026-03-15 01:34:50] 2026-03-15 00:31:12,631 | INFO     | zombie collector waiting for pid 3217759
[2026-03-15 01:34:50] 2026-03-15 00:31:12,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 01:34:50] 2026-03-15 00:31:12,631 | INFO     | collected zombie processes
[2026-03-15 01:34:50] 2026-03-15 00:31:12,631 | INFO     | will attempt to kill all subprocesses of pid=3217759
[2026-03-15 01:34:50] 2026-03-15 00:31:13,127 | INFO     | process IDs to be killed: [3217759] (in reverse order)
[2026-03-15 01:34:50] 2026-03-15 00:31:13,358 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 01:34:50] 2026-03-15 00:31:13,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 01:34:50] 2026-03-15 00:31:13,392 | INFO     | did not find any defunct processes belonging to 3217759
[2026-03-15 01:34:50] 2026-03-15 00:31:13,421 | INFO     | did not find any defunct processes belonging to 3217759
[2026-03-15 01:34:50] 2026-03-15 00:31:13,421 | INFO     | ready for new job
[2026-03-15 01:34:50] 2026-03-15 00:31:13,422 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 01:34:50] 2026-03-15 00:31:13,423 | INFO     | **************************************
[2026-03-15 01:34:50] 2026-03-15 00:31:13,423 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 01:34:50] 2026-03-15 00:31:13,423 | INFO     | **************************************
[2026-03-15 01:34:50] 2026-03-15 00:31:13,423 | INFO     | 
[2026-03-15 01:34:50] 2026-03-15 00:31:13,428 | INFO     | architecture information:
[2026-03-15 01:34:50] 2026-03-15 00:31:13,429 | INFO     | executing command: cat /etc/os-release
[2026-03-15 01:34:50] 2026-03-15 00:31:13,443 | INFO     | cat /etc/os-release:
[2026-03-15 01:34:50] NAME="CentOS Linux"
[2026-03-15 01:34:50] VERSION="7 (Core)"
[2026-03-15 01:34:50] ID="centos"
[2026-03-15 01:34:50] ID_LIKE="rhel fedora"
[2026-03-15 01:34:50] VERSION_ID="7"
[2026-03-15 01:34:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 01:34:50] ANSI_COLOR="0;31"
[2026-03-15 01:34:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 01:34:50] HOME_URL="https://www.centos.org/"
[2026-03-15 01:34:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 01:34:50] 
[2026-03-15 01:34:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 01:34:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 01:34:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 01:34:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 01:34:50] 
[2026-03-15 01:34:50] 2026-03-15 00:31:13,443 | INFO     | **************************************
[2026-03-15 01:34:50] 2026-03-15 00:31:13,945 | INFO     | executing command: df -mP /var/lib/boinc/var/slot156/slots/0
[2026-03-15 01:34:50] 2026-03-15 00:31:13,963 | INFO     | sufficient remaining disk space (19765657600 B)
[2026-03-15 01:34:50] 2026-03-15 00:31:13,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 01:34:50] 2026-03-15 00:31:13,963 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 01:34:50] 2026-03-15 00:31:13,963 | INFO     | update_server=False
[2026-03-15 01:34:50] 2026-03-15 00:31:13,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 01:34:50] 2026-03-15 00:31:14,297 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 01:34:50] 2026-03-15 00:31:14,528 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 01:34:50] 2026-03-15 00:31:14,528 | INFO     | aborting loop
[2026-03-15 01:34:50] 2026-03-15 00:31:14,628 | INFO     | all data control threads have been joined
[2026-03-15 01:34:50] 2026-03-15 00:31:14,967 | INFO     | [job] retrieve thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:15,087 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:15,100 | INFO     | [job] validate thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:15,241 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:15,251 | INFO     | all job control threads have been joined
[2026-03-15 01:34:50] 2026-03-15 00:31:15,442 | INFO     | all payload control threads have been joined
[2026-03-15 01:34:50] 2026-03-15 00:31:15,514 | INFO     | [data] copytool_in thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:15,533 | INFO     | [job] job monitor thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:15,633 | INFO     | [data] control thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:15,715 | INFO     | [payload] failed_post thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:15,742 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:16,254 | INFO     | [job] control thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:16,302 | INFO     | [data] copytool_out thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:16,403 | INFO     | [payload] validate_post thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:16,447 | INFO     | [payload] control thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:16,612 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 01:34:50] 2026-03-15 00:31:16,995 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 01:34:50] 2026-03-15 00:31:17,617 | INFO     | [job] queue monitor thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:21,002 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:24,478 | INFO     | job.realtimelogging is not enabled
[2026-03-15 01:34:50] 2026-03-15 00:31:25,483 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 01:34:50] 2026-03-15 00:31:43,207 | INFO     | 5963s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-15 01:34:50] 2026-03-15 00:31:44,814 | INFO     | PID=3205823 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 01:34:50] 2026-03-15 00:31:44,815 | INFO     | .. there are 48 such processes running
[2026-03-15 01:34:50] 2026-03-15 00:31:44,815 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 01:34:50] 2026-03-15 00:31:44,815 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 01:34:50] 2026-03-15 00:31:44,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 01:34:50] 2026-03-15 00:32:04,644 | INFO     | [monitor] cgroup control has ended
[2026-03-15 01:34:50] 2026-03-15 00:32:05,668 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23383667099456)>', '<ExcThread(monitor, started 23383422273280)>']
[2026-03-15 01:34:50] 2026-03-15 00:32:05,922 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 01:34:50] 2026-03-15 00:32:05,922 | INFO     | [monitor] control thread has ended
[2026-03-15 01:34:50] 2026-03-15 00:32:10,693 | INFO     | all workflow threads have been joined
[2026-03-15 01:34:50] 2026-03-15 00:32:10,693 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 01:34:50] 2026-03-15 00:32:10,693 | INFO     | traces error code: 0
[2026-03-15 01:34:50] 2026-03-15 00:32:10,693 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 01:34:50] 2026-03-15 00:32:10,957 [wrapper] ==== pilot stdout END ====
[2026-03-15 01:34:50] 2026-03-15 00:32:10,960 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 01:34:50] 2026-03-15 00:32:10,963 [wrapper] pilotpid: 3205823
[2026-03-15 01:34:50] 2026-03-15 00:32:10,965 [wrapper] Pilot exit status: 0
[2026-03-15 01:34:50] 2026-03-15 00:32:10,975 [wrapper] pandaids: 7052859671
[2026-03-15 01:34:50] 2026-03-15 00:32:11,117 [wrapper] cleanup supervisor_pilot 4113740 3205824
[2026-03-15 01:34:50] 2026-03-15 00:32:11,121 [wrapper] Test setup, not cleaning
[2026-03-15 01:34:50] 2026-03-15 00:32:11,126 [wrapper] apfmon messages muted
[2026-03-15 01:34:50] 2026-03-15 00:32:11,130 [wrapper] ==== wrapper stdout END ====
[2026-03-15 01:34:50] 2026-03-15 00:32:11,132 [wrapper] ==== wrapper stderr END ====
[2026-03-15 01:34:50]  *** Error codes and diagnostics ***
[2026-03-15 01:34:50]     "exeErrorCode": 0,
[2026-03-15 01:34:50]     "exeErrorDiag": "",
[2026-03-15 01:34:50]     "pilotErrorCode": 0,
[2026-03-15 01:34:50]     "pilotErrorDiag": "",
[2026-03-15 01:34:50]  *** Listing of results directory ***
[2026-03-15 01:34:50] total 405048
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc    585013 Mar 13 04:13 pilot3.tar.gz
[2026-03-15 01:34:50] -rwx------. 1 boinc boinc     36322 Mar 13 04:14 runpilot2-wrapper.sh
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc      5111 Mar 13 04:15 queuedata.json
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc       100 Mar 14 23:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 01:34:50] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 23:51 run_atlas
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc       105 Mar 14 23:51 job.xml
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc      6709 Mar 14 23:51 init_data.xml
[2026-03-15 01:34:50] -rw-r--r--. 2 boinc boinc 213418755 Mar 14 23:51 EVNT.48967083._000686.pool.root.1
[2026-03-15 01:34:50] -rw-r--r--. 2 boinc boinc     15845 Mar 14 23:51 start_atlas.sh
[2026-03-15 01:34:50] drwxrwx--x. 2 boinc boinc      4096 Mar 14 23:51 shared
[2026-03-15 01:34:50] -rw-r--r--. 2 boinc boinc    597524 Mar 14 23:51 input.tar.gz
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc         0 Mar 14 23:51 boinc_lockfile
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc      2562 Mar 14 23:51 pandaJob.out
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc   1006481 Mar 14 23:51 agis_schedconf.cvmfs.json
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc   1511579 Mar 14 23:51 agis_ddmendpoints.agis.ALL.json
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc       444 Mar 14 23:51 workernode_map.json
[2026-03-15 01:34:50] drwx------. 5 boinc boinc      4096 Mar 14 23:51 pilot3
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc 195151771 Mar 15 01:30 HITS.48967085._016974.pool.root.1
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc       530 Mar 15 01:30 boinc_task_state.xml
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc      1031 Mar 15 01:31 memory_monitor_summary.json
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc    272293 Mar 15 01:31 log.48967085._016974.job.log.tgz.1
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc      6354 Mar 15 01:31 heartbeat.json
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc        95 Mar 15 01:31 pilot_heartbeat.json
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc      5017 Mar 15 01:32 pilotlog.txt
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc    860111 Mar 15 01:32 log.48967085._016974.job.log.1
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc       357 Mar 15 01:32 output.list
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc       620 Mar 15 01:32 runtime_log
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc   1146880 Mar 15 01:32 result.tar.gz
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc      9221 Mar 15 01:32 runtime_log.err
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc       663 Mar 15 01:32 KvxNDmm97K9n9Rq4apOajLDm4fhM0noT9bVooX4SDmTulLDmE01HNm.diag
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc        27 Mar 15 01:34 wrapper_checkpoint.txt
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc      8192 Mar 15 01:34 boinc_mmap_file
[2026-03-15 01:34:50] -rw-r--r--. 1 boinc boinc     22586 Mar 15 01:34 stderr.txt
[2026-03-15 01:34:50] HITS file was successfully produced:
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc 195151771 Mar 15 01:30 shared/HITS.pool.root.1
[2026-03-15 01:34:50]  *** Contents of shared directory: ***
[2026-03-15 01:34:50] total 400728
[2026-03-15 01:34:50] -rw-r--r--. 2 boinc boinc 213418755 Mar 14 23:51 ATLAS.root_0
[2026-03-15 01:34:50] -rw-r--r--. 2 boinc boinc     15845 Mar 14 23:51 start_atlas.sh
[2026-03-15 01:34:50] -rw-r--r--. 2 boinc boinc    597524 Mar 14 23:51 input.tar.gz
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc 195151771 Mar 15 01:30 HITS.pool.root.1
[2026-03-15 01:34:50] -rw-------. 1 boinc boinc   1146880 Mar 15 01:32 result.tar.gz
01:34:52 (3198357): run_atlas exited; CPU time 23046.703374
01:34:52 (3198357): called boinc_finish(0)

</stderr_txt>
]]>

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