Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:47:36 (24242): wrapper (7.7.26015): starting
17:47:36 (24242): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 17:47:36] Arguments: --nthreads 8
[2026-03-13 17:47:36] Threads: 8
[2026-03-13 17:47:36] Checking for CVMFS
[2026-03-13 17:47:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 17:47:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 17:47:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 17:47:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 17:47:40] 2.11.2.0 2467 126393 134584 157247 0 53 14761629 25165824 188 130560 157 40258154 99.824 30156242 1056 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 17:47:40] CVMFS is ok
[2026-03-13 17:47:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 17:47:40] Checking for apptainer binary...
[2026-03-13 17:47:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 17:47:40] Running /usr/bin/apptainer --version
[2026-03-13 17:47:41] apptainer version 1.3.2-1.el7
[2026-03-13 17:47:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 17:47:55] cg-vwn487.simple-grid.lan
[2026-03-13 17:47:55] apptainer works
[2026-03-13 17:47:56] Set ATHENA_PROC_NUMBER=8
[2026-03-13 17:47:56] Set ATHENA_CORE_NUMBER=8
[2026-03-13 17:47:56] Starting ATLAS job with PandaID=7052859403
[2026-03-13 17:47:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 22:38:44]  *** The last 200 lines of the pilot log: ***
[2026-03-13 22:38:44] 2026-03-13 21:37:31,719 | INFO     | total number of processed events: 400 (read)
[2026-03-13 22:38:44] 2026-03-13 21:37:31,721 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7052859403/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 22:38:44] 2026-03-13 21:37:31,722 | INFO     | extracted standard info from prmon json
[2026-03-13 22:38:44] 2026-03-13 21:37:31,722 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 22:38:44] 2026-03-13 21:37:31,722 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 22:38:44] 2026-03-13 21:37:31,722 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 22:38:44] 2026-03-13 21:37:31,722 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 22:38:44] 2026-03-13 21:37:31,728 | INFO     | fitting pss+swap vs Time
[2026-03-13 22:38:44] 2026-03-13 21:37:31,728 | INFO     | sum of square deviations: 6378584712.5
[2026-03-13 22:38:44] 2026-03-13 21:37:31,731 | INFO     | sum of deviations: 181010625117.0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,731 | INFO     | mean x: 1773429465.5
[2026-03-13 22:38:44] 2026-03-13 21:37:31,731 | INFO     | mean y: 2392991.8248175182
[2026-03-13 22:38:44] 2026-03-13 21:37:31,732 | INFO     | intersect: -50323751540.20364
[2026-03-13 22:38:44] 2026-03-13 21:37:31,732 | INFO     | chi2: 8.728913796494687
[2026-03-13 22:38:44] 2026-03-13 21:37:31,733 | INFO     | sum of square deviations: 6035722470.0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,735 | INFO     | sum of deviations: 195187500123.99997
[2026-03-13 22:38:44] 2026-03-13 21:37:31,735 | INFO     | mean x: 1773429313.0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,736 | INFO     | mean y: 2399178.977695167
[2026-03-13 22:38:44] 2026-03-13 21:37:31,736 | INFO     | intersect: -57348023404.50015
[2026-03-13 22:38:44] 2026-03-13 21:37:31,736 | INFO     | chi2: 8.018436308982652
[2026-03-13 22:38:44] 2026-03-13 21:37:31,740 | INFO     | current chi2=8.018436308982652 (change=8.139357359644737 %)
[2026-03-13 22:38:44] 2026-03-13 21:37:31,740 | INFO     | right removable region: 268
[2026-03-13 22:38:44] 2026-03-13 21:37:31,740 | INFO     | sum of square deviations: 6035722470.0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,743 | INFO     | sum of deviations: 86748942836.99998
[2026-03-13 22:38:44] 2026-03-13 21:37:31,743 | INFO     | mean x: 1773429618.0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,743 | INFO     | mean y: 2434895.5130111524
[2026-03-13 22:38:44] 2026-03-13 21:37:31,743 | INFO     | intersect: -25486335557.732285
[2026-03-13 22:38:44] 2026-03-13 21:37:31,744 | INFO     | chi2: 3.734177376368005
[2026-03-13 22:38:44] 2026-03-13 21:37:31,744 | INFO     | current chi2=3.734177376368005 (change=57.220595100073545 %)
[2026-03-13 22:38:44] 2026-03-13 21:37:31,744 | INFO     | sum of square deviations: 5705372090.0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,747 | INFO     | sum of deviations: 14851030171.0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,747 | INFO     | mean x: 1773429770.5
[2026-03-13 22:38:44] 2026-03-13 21:37:31,747 | INFO     | mean y: 2468050.287878788
[2026-03-13 22:38:44] 2026-03-13 21:37:31,747 | INFO     | intersect: -4613753050.174143
[2026-03-13 22:38:44] 2026-03-13 21:37:31,748 | INFO     | chi2: 1.0438811775239332
[2026-03-13 22:38:44] 2026-03-13 21:37:31,748 | INFO     | current chi2=1.0438811775239332 (change=72.04521713054645 %)
[2026-03-13 22:38:44] 2026-03-13 21:37:31,748 | INFO     | sum of square deviations: 5387301010.0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,751 | INFO     | sum of deviations: -5678581073.0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,751 | INFO     | mean x: 1773429923.0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,751 | INFO     | mean y: 2477844.2972972975
[2026-03-13 22:38:44] 2026-03-13 21:37:31,751 | INFO     | intersect: 1871793402.5604222
[2026-03-13 22:38:44] 2026-03-13 21:37:31,752 | INFO     | chi2: 0.7887427593162675
[2026-03-13 22:38:44] 2026-03-13 21:37:31,752 | INFO     | current chi2=0.7887427593162675 (change=24.441327586042817 %)
[2026-03-13 22:38:44] 2026-03-13 21:37:31,752 | INFO     | left removable region: 30
[2026-03-13 22:38:44] 2026-03-13 21:37:31,752 | INFO     | sum of square deviations: 4180243959.5
[2026-03-13 22:38:44] 2026-03-13 21:37:31,754 | INFO     | sum of deviations: 6670703677.999999
[2026-03-13 22:38:44] 2026-03-13 21:37:31,754 | INFO     | mean x: 1773430197.5
[2026-03-13 22:38:44] 2026-03-13 21:37:31,755 | INFO     | mean y: 2488395.1428571427
[2026-03-13 22:38:44] 2026-03-13 21:37:31,755 | INFO     | intersect: -2827496518.597562
[2026-03-13 22:38:44] 2026-03-13 21:37:31,755 | INFO     | chi2: 0.0003669599819378947
[2026-03-13 22:38:44] 2026-03-13 21:37:31,755 | INFO     | current memory leak: 1.60 B/s (using 238 data points, chi2=0.00)
[2026-03-13 22:38:44] 2026-03-13 21:37:31,756 | INFO     | could have reported an average CPU frequency of 2249 MHz (13 samples)
[2026-03-13 22:38:44] 2026-03-13 21:37:31,756 | INFO     | ..............................
[2026-03-13 22:38:44] 2026-03-13 21:37:31,756 | INFO     | . Timing measurements:
[2026-03-13 22:38:44] 2026-03-13 21:37:31,756 | INFO     | . get job = 0 s
[2026-03-13 22:38:44] 2026-03-13 21:37:31,756 | INFO     | . initial setup = 125 s
[2026-03-13 22:38:44] 2026-03-13 21:37:31,756 | INFO     | . payload setup = 148 s
[2026-03-13 22:38:44] 2026-03-13 21:37:31,757 | INFO     | . stage-in = 0 s
[2026-03-13 22:38:44] 2026-03-13 21:37:31,757 | INFO     | . payload execution = 16829 s
[2026-03-13 22:38:44] 2026-03-13 21:37:31,757 | INFO     | . stage-out = 3 s
[2026-03-13 22:38:44] 2026-03-13 21:37:31,757 | INFO     | . log creation = 1 s
[2026-03-13 22:38:44] 2026-03-13 21:37:31,757 | INFO     | ..............................
[2026-03-13 22:38:44] 2026-03-13 21:37:31,886 | INFO     | 
[2026-03-13 22:38:44] 2026-03-13 21:37:31,886 | INFO     | job summary report
[2026-03-13 22:38:44] 2026-03-13 21:37:31,886 | INFO     | --------------------------------------------------
[2026-03-13 22:38:44] 2026-03-13 21:37:31,886 | INFO     | PanDA job id: 7052859403
[2026-03-13 22:38:44] 2026-03-13 21:37:31,886 | INFO     | task id: 48967085
[2026-03-13 22:38:44] 2026-03-13 21:37:31,886 | INFO     | errors: (none)
[2026-03-13 22:38:44] 2026-03-13 21:37:31,886 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 22:38:44] 2026-03-13 21:37:31,887 | INFO     | pilot state: finished 
[2026-03-13 22:38:44] 2026-03-13 21:37:31,887 | INFO     | transexitcode: 0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,887 | INFO     | exeerrorcode: 0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,887 | INFO     | exeerrordiag: 
[2026-03-13 22:38:44] 2026-03-13 21:37:31,887 | INFO     | exitcode: 0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,887 | INFO     | exitmsg: OK
[2026-03-13 22:38:44] 2026-03-13 21:37:31,887 | INFO     | cpuconsumptiontime: 63592 s
[2026-03-13 22:38:44] 2026-03-13 21:37:31,887 | INFO     | nevents: 400
[2026-03-13 22:38:44] 2026-03-13 21:37:31,887 | INFO     | neventsw: 0
[2026-03-13 22:38:44] 2026-03-13 21:37:31,887 | INFO     | pid: 32653
[2026-03-13 22:38:44] 2026-03-13 21:37:31,888 | INFO     | pgrp: 32653
[2026-03-13 22:38:44] 2026-03-13 21:37:31,888 | INFO     | corecount: 8
[2026-03-13 22:38:44] 2026-03-13 21:37:31,888 | INFO     | event service: False
[2026-03-13 22:38:44] 2026-03-13 21:37:31,888 | INFO     | sizes: {0: 2279152, 1: 2279837, 2: 2280298, 13: 2280298, 16982: 2312300, 16983: 2312299, 16987: 2321481, 16990: 2321537, 16993: 2321731}
[2026-03-13 22:38:44] 2026-03-13 21:37:31,888 | INFO     | --------------------------------------------------
[2026-03-13 22:38:44] 2026-03-13 21:37:31,888 | INFO     | 
[2026-03-13 22:38:44] 2026-03-13 21:37:31,888 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-03-13 22:38:44] 2026-03-13 21:37:32,552 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,552 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,552 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,553 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,553 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,553 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,553 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,553 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,554 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,554 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,554 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,554 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,554 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,554 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 22:38:44] 2026-03-13 21:37:32,554 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,554 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 22:38:44] 2026-03-13 21:37:32,554 | INFO     | job 7052859403 has completed (purged errors)
[2026-03-13 22:38:44] 2026-03-13 21:37:32,555 | INFO     | overall cleanup function is called
[2026-03-13 22:38:44] 2026-03-13 21:37:33,563 | INFO     | --- collectZombieJob: --- 10, [32653]
[2026-03-13 22:38:44] 2026-03-13 21:37:33,564 | INFO     | zombie collector waiting for pid 32653
[2026-03-13 22:38:44] 2026-03-13 21:37:33,564 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 22:38:44] 2026-03-13 21:37:33,564 | INFO     | collected zombie processes
[2026-03-13 22:38:44] 2026-03-13 21:37:33,564 | INFO     | will attempt to kill all subprocesses of pid=32653
[2026-03-13 22:38:44] 2026-03-13 21:37:33,666 | INFO     | process IDs to be killed: [32653] (in reverse order)
[2026-03-13 22:38:44] 2026-03-13 21:37:34,603 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 22:38:44] 2026-03-13 21:37:34,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 22:38:44] 2026-03-13 21:37:34,605 | INFO     | did not find any defunct processes belonging to 32653
[2026-03-13 22:38:44] 2026-03-13 21:37:34,607 | INFO     | did not find any defunct processes belonging to 32653
[2026-03-13 22:38:44] 2026-03-13 21:37:34,607 | INFO     | ready for new job
[2026-03-13 22:38:44] 2026-03-13 21:37:34,608 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 22:38:44] 2026-03-13 21:37:34,610 | INFO     | **************************************
[2026-03-13 22:38:44] 2026-03-13 21:37:34,610 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 22:38:44] 2026-03-13 21:37:34,610 | INFO     | **************************************
[2026-03-13 22:38:44] 2026-03-13 21:37:34,610 | INFO     | 
[2026-03-13 22:38:44] 2026-03-13 21:37:34,611 | INFO     | pilot is running in a VM
[2026-03-13 22:38:44] 2026-03-13 21:37:34,611 | INFO     | architecture information:
[2026-03-13 22:38:44] 2026-03-13 21:37:34,624 | INFO     | executing command: cat /etc/os-release
[2026-03-13 22:38:44] 2026-03-13 21:37:34,939 | INFO     | cat /etc/os-release:
[2026-03-13 22:38:44] NAME="CentOS Linux"
[2026-03-13 22:38:44] VERSION="7 (Core)"
[2026-03-13 22:38:44] ID="centos"
[2026-03-13 22:38:44] ID_LIKE="rhel fedora"
[2026-03-13 22:38:44] VERSION_ID="7"
[2026-03-13 22:38:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 22:38:44] ANSI_COLOR="0;31"
[2026-03-13 22:38:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 22:38:44] HOME_URL="https://www.centos.org/"
[2026-03-13 22:38:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 22:38:44] 
[2026-03-13 22:38:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 22:38:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 22:38:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 22:38:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 22:38:44] 
[2026-03-13 22:38:44] 2026-03-13 21:37:34,939 | INFO     | **************************************
[2026-03-13 22:38:44] 2026-03-13 21:37:35,443 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-03-13 22:38:44] 2026-03-13 21:37:35,627 | INFO     | sufficient remaining disk space (496558407680 B)
[2026-03-13 22:38:44] 2026-03-13 21:37:35,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 22:38:44] 2026-03-13 21:37:35,628 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 22:38:44] 2026-03-13 21:37:35,628 | INFO     | update_server=False
[2026-03-13 22:38:44] 2026-03-13 21:37:35,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 22:38:44] 2026-03-13 21:37:35,632 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 22:38:44] 2026-03-13 21:37:35,944 | INFO     | all payload control threads have been joined
[2026-03-13 22:38:44] 2026-03-13 21:37:36,057 | INFO     | all data control threads have been joined
[2026-03-13 22:38:44] 2026-03-13 21:37:36,099 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-13 22:38:44] 2026-03-13 21:37:36,100 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-13 22:38:44] 2026-03-13 21:37:36,100 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 22:38:44] 2026-03-13 21:37:36,100 | INFO     | will abort loop
[2026-03-13 22:38:44] 2026-03-13 21:37:36,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 22:38:44] 2026-03-13 21:37:36,634 | INFO     | [job] retrieve thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:36,668 | INFO     | [job] validate thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:36,774 | INFO     | all job control threads have been joined
[2026-03-13 22:38:44] 2026-03-13 21:37:36,899 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 22:38:44] 2026-03-13 21:37:36,951 | INFO     | [payload] control thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,042 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,064 | INFO     | [data] control thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,105 | INFO     | [job] job monitor thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,123 | INFO     | [data] copytool_in thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,461 | INFO     | [payload] validate_post thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,589 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,641 | INFO     | [payload] failed_post thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,762 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,780 | INFO     | [job] control thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,905 | INFO     | [job] queue monitor thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:37,915 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:38,510 | INFO     | [data] copytool_out thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:37:39,644 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 22:38:44] 2026-03-13 21:38:03,766 | INFO     | PID=28205 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 22:38:44] 2026-03-13 21:38:03,766 | INFO     | .. there are 2 such processes running
[2026-03-13 22:38:44] 2026-03-13 21:38:03,767 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 22:38:44] 2026-03-13 21:38:03,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 22:38:44] 2026-03-13 21:38:03,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 22:38:44] 2026-03-13 21:38:34,687 | INFO     | [monitor] cgroup control has ended
[2026-03-13 22:38:44] 2026-03-13 21:38:35,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461724038976)>', '<ExcThread(monitor, started 140461050156800)>']
[2026-03-13 22:38:44] 2026-03-13 21:38:35,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 22:38:44] 2026-03-13 21:38:35,948 | INFO     | [monitor] control thread has ended
[2026-03-13 22:38:44] 2026-03-13 21:38:40,197 | INFO     | all workflow threads have been joined
[2026-03-13 22:38:44] 2026-03-13 21:38:40,198 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 22:38:44] 2026-03-13 21:38:40,198 | INFO     | traces error code: 0
[2026-03-13 22:38:44] 2026-03-13 21:38:40,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 22:38:44] 2026-03-13 21:38:40,605 [wrapper] ==== pilot stdout END ====
[2026-03-13 22:38:44] 2026-03-13 21:38:40,703 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 22:38:44] 2026-03-13 21:38:40,822 [wrapper] pilotpid: 28205
[2026-03-13 22:38:44] 2026-03-13 21:38:40,927 [wrapper] Pilot exit status: 0
[2026-03-13 22:38:44] 2026-03-13 21:38:41,473 [wrapper] pandaids: 7052859403
[2026-03-13 22:38:44] 2026-03-13 21:38:42,499 [wrapper] cleanup supervisor_pilot  6742 28206
[2026-03-13 22:38:44] 2026-03-13 21:38:42,624 [wrapper] Test setup, not cleaning
[2026-03-13 22:38:44] 2026-03-13 21:38:42,721 [wrapper] apfmon messages muted
[2026-03-13 22:38:44] 2026-03-13 21:38:42,815 [wrapper] ==== wrapper stdout END ====
[2026-03-13 22:38:44] 2026-03-13 21:38:42,875 [wrapper] ==== wrapper stderr END ====
[2026-03-13 22:38:44]  *** Error codes and diagnostics ***
[2026-03-13 22:38:44]     "exeErrorCode": 0,
[2026-03-13 22:38:44]     "exeErrorDiag": "",
[2026-03-13 22:38:44]     "pilotErrorCode": 0,
[2026-03-13 22:38:44]     "pilotErrorDiag": "",
[2026-03-13 22:38:44]  *** Listing of results directory ***
[2026-03-13 22:38:44] total 404596
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc    585013 Mar 13 04:13 pilot3.tar.gz
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc      5111 Mar 13 04:13 queuedata.json
[2026-03-13 22:38:44] -rwx------. 1 boinc boinc     36322 Mar 13 04:14 runpilot2-wrapper.sh
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc       100 Mar 13 17:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 22:38:44] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 17:47 run_atlas
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc       105 Mar 13 17:47 job.xml
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc      6390 Mar 13 17:47 init_data.xml
[2026-03-13 22:38:44] -rw-r--r--. 2 boinc boinc 211948145 Mar 13 17:47 EVNT.48967083._000672.pool.root.1
[2026-03-13 22:38:44] -rw-r--r--. 2 boinc boinc     15845 Mar 13 17:47 start_atlas.sh
[2026-03-13 22:38:44] drwxrwx--x. 2 boinc boinc        68 Mar 13 17:47 shared
[2026-03-13 22:38:44] -rw-r--r--. 2 boinc boinc    597516 Mar 13 17:47 input.tar.gz
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc         0 Mar 13 17:47 boinc_lockfile
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc      2563 Mar 13 17:47 pandaJob.out
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc       415 Mar 13 17:53 workernode_map.json
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc   1006597 Mar 13 17:54 agis_schedconf.cvmfs.json
[2026-03-13 22:38:44] drwx------. 5 boinc boinc      4096 Mar 13 17:54 pilot3
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc 192612834 Mar 13 22:35 HITS.48967085._016768.pool.root.1
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc       531 Mar 13 22:36 boinc_task_state.xml
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc      1012 Mar 13 22:37 memory_monitor_summary.json
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc   1511579 Mar 13 22:37 agis_ddmendpoints.agis.ALL.json
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc    513982 Mar 13 22:37 log.48967085._016768.job.log.tgz.1
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc      6318 Mar 13 22:37 heartbeat.json
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc        95 Mar 13 22:38 pilot_heartbeat.json
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc      8192 Mar 13 22:38 boinc_mmap_file
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc        28 Mar 13 22:38 wrapper_checkpoint.txt
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc      5066 Mar 13 22:38 pilotlog.txt
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc   2396623 Mar 13 22:38 log.48967085._016768.job.log.1
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc       357 Mar 13 22:38 output.list
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc       620 Mar 13 22:38 runtime_log
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc   2928640 Mar 13 22:38 result.tar.gz
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc       656 Mar 13 22:38 VXKLDmm97K9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm7PoLDmqCs7Zn.diag
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc      8816 Mar 13 22:38 runtime_log.err
[2026-03-13 22:38:44] -rw-r--r--. 1 boinc boinc     20737 Mar 13 22:38 stderr.txt
[2026-03-13 22:38:44] HITS file was successfully produced:
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc 192612834 Mar 13 22:35 shared/HITS.pool.root.1
[2026-03-13 22:38:44]  *** Contents of shared directory: ***
[2026-03-13 22:38:44] total 398544
[2026-03-13 22:38:44] -rw-r--r--. 2 boinc boinc 211948145 Mar 13 17:47 ATLAS.root_0
[2026-03-13 22:38:44] -rw-r--r--. 2 boinc boinc     15845 Mar 13 17:47 start_atlas.sh
[2026-03-13 22:38:44] -rw-r--r--. 2 boinc boinc    597516 Mar 13 17:47 input.tar.gz
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc 192612834 Mar 13 22:35 HITS.pool.root.1
[2026-03-13 22:38:44] -rw-------. 1 boinc boinc   2928640 Mar 13 22:38 result.tar.gz
22:38:45 (24242): run_atlas exited; CPU time 63760.165670
22:38:45 (24242): called boinc_finish(0)

</stderr_txt>
]]>

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