Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:18:38 (26916): wrapper (7.7.26015): starting
17:18:38 (26916): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 17:18:38] Arguments: --nthreads 8
[2026-03-13 17:18:38] Threads: 8
[2026-03-13 17:18:38] Checking for CVMFS
[2026-03-13 17:18:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 17:18:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 17:18:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 17:18:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 17:18:43] 2.11.2.0 20422 126365 138016 157246 3 13 23447775 25165825 4466 130560 162 28237847 99.795 26102758 904 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 17:18:43] CVMFS is ok
[2026-03-13 17:18:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 17:18:43] Checking for apptainer binary...
[2026-03-13 17:18:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 17:18:43] Running /usr/bin/apptainer --version
[2026-03-13 17:18:43] apptainer version 1.3.2-1.el7
[2026-03-13 17:18:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 17:18:55] cg-vwn357.simple-grid.lan
[2026-03-13 17:18:55] apptainer works
[2026-03-13 17:18:55] Set ATHENA_PROC_NUMBER=8
[2026-03-13 17:18:55] Set ATHENA_CORE_NUMBER=8
[2026-03-13 17:18:55] Starting ATLAS job with PandaID=7052855138
[2026-03-13 17:18:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 22:27:06]  *** The last 200 lines of the pilot log: ***
[2026-03-13 22:27:06] 2026-03-13 21:26:05,841 | INFO     | total number of processed events: 400 (read)
[2026-03-13 22:27:06] 2026-03-13 21:26:05,847 | INFO     | using path: /var/lib/boinc/slots/20/PanDA_Pilot-7052855138/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 22:27:06] 2026-03-13 21:26:05,848 | INFO     | extracted standard info from prmon json
[2026-03-13 22:27:06] 2026-03-13 21:26:05,848 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 22:27:06] 2026-03-13 21:26:05,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 22:27:06] 2026-03-13 21:26:05,849 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 22:27:06] 2026-03-13 21:26:05,849 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 22:27:06] 2026-03-13 21:26:05,855 | INFO     | fitting pss+swap vs Time
[2026-03-13 22:27:06] 2026-03-13 21:26:05,856 | INFO     | sum of square deviations: 7799669962.0
[2026-03-13 22:27:06] 2026-03-13 21:26:05,859 | INFO     | sum of deviations: 84274962970.0
[2026-03-13 22:27:06] 2026-03-13 21:26:05,859 | INFO     | mean x: 1773428236.0
[2026-03-13 22:27:06] 2026-03-13 21:26:05,859 | INFO     | mean y: 2455813.8737201365
[2026-03-13 22:27:06] 2026-03-13 21:26:05,860 | INFO     | intersect: -19159329190.748306
[2026-03-13 22:27:06] 2026-03-13 21:26:05,860 | INFO     | chi2: 6.456506013568555
[2026-03-13 22:27:06] 2026-03-13 21:26:05,861 | INFO     | sum of square deviations: 7407141672.0
[2026-03-13 22:27:06] 2026-03-13 21:26:05,864 | INFO     | sum of deviations: 101987731830.0
[2026-03-13 22:27:06] 2026-03-13 21:26:05,864 | INFO     | mean x: 1773428083.5
[2026-03-13 22:27:06] 2026-03-13 21:26:05,864 | INFO     | mean y: 2462591.576388889
[2026-03-13 22:27:06] 2026-03-13 21:26:05,865 | INFO     | intersect: -24415580941.12585
[2026-03-13 22:27:06] 2026-03-13 21:26:05,865 | INFO     | chi2: 5.7285392875639385
[2026-03-13 22:27:06] 2026-03-13 21:26:05,865 | INFO     | current chi2=5.7285392875639385 (change=11.274932981937463 %)
[2026-03-13 22:27:06] 2026-03-13 21:26:05,865 | INFO     | right removable region: 287
[2026-03-13 22:27:06] 2026-03-13 21:26:05,866 | INFO     | sum of square deviations: 7407141672.0
[2026-03-13 22:27:06] 2026-03-13 21:26:05,869 | INFO     | sum of deviations: -16821769126.999996
[2026-03-13 22:27:06] 2026-03-13 21:26:05,869 | INFO     | mean x: 1773428388.5
[2026-03-13 22:27:06] 2026-03-13 21:26:05,869 | INFO     | mean y: 2495059.4930555555
[2026-03-13 22:27:06] 2026-03-13 21:26:05,870 | INFO     | intersect: 4029986936.3373213
[2026-03-13 22:27:06] 2026-03-13 21:26:05,870 | INFO     | chi2: 1.8319019259537024
[2026-03-13 22:27:06] 2026-03-13 21:26:05,870 | INFO     | current chi2=1.8319019259537024 (change=71.62703911211572 %)
[2026-03-13 22:27:06] 2026-03-13 21:26:05,871 | INFO     | sum of square deviations: 7028008982.0
[2026-03-13 22:27:06] 2026-03-13 21:26:05,874 | INFO     | sum of deviations: -53308366284.00003
[2026-03-13 22:27:06] 2026-03-13 21:26:05,874 | INFO     | mean x: 1773428541.0
[2026-03-13 22:27:06] 2026-03-13 21:26:05,874 | INFO     | mean y: 2509642.717314488
[2026-03-13 22:27:06] 2026-03-13 21:26:05,874 | INFO     | intersect: 13454196811.054482
[2026-03-13 22:27:06] 2026-03-13 21:26:05,875 | INFO     | chi2: 0.9762495765155822
[2026-03-13 22:27:06] 2026-03-13 21:26:05,875 | INFO     | current chi2=0.9762495765155822 (change=46.70841475275272 %)
[2026-03-13 22:27:06] 2026-03-13 21:26:05,875 | INFO     | sum of square deviations: 6662039329.5
[2026-03-13 22:27:06] 2026-03-13 21:26:05,878 | INFO     | sum of deviations: -50337210553.00003
[2026-03-13 22:27:06] 2026-03-13 21:26:05,878 | INFO     | mean x: 1773428693.5
[2026-03-13 22:27:06] 2026-03-13 21:26:05,878 | INFO     | mean y: 2508383.2230215827
[2026-03-13 22:27:06] 2026-03-13 21:26:05,878 | INFO     | intersect: 13402227167.552252
[2026-03-13 22:27:06] 2026-03-13 21:26:05,879 | INFO     | chi2: 0.9627336732653228
[2026-03-13 22:27:06] 2026-03-13 21:26:05,879 | INFO     | current chi2=0.9627336732653228 (change=1.3844721242799627 %)
[2026-03-13 22:27:06] 2026-03-13 21:26:05,883 | INFO     | left removable region: 30
[2026-03-13 22:27:06] 2026-03-13 21:26:05,884 | INFO     | sum of square deviations: 5263458688.0
[2026-03-13 22:27:06] 2026-03-13 21:26:05,886 | INFO     | sum of deviations: -3400762017.000002
[2026-03-13 22:27:06] 2026-03-13 21:26:05,886 | INFO     | mean x: 1773428968.0
[2026-03-13 22:27:06] 2026-03-13 21:26:05,887 | INFO     | mean y: 2503486.774319066
[2026-03-13 22:27:06] 2026-03-13 21:26:05,887 | INFO     | intersect: 1148329878.0732245
[2026-03-13 22:27:06] 2026-03-13 21:26:05,887 | INFO     | chi2: 0.07726459625775858
[2026-03-13 22:27:06] 2026-03-13 21:26:05,887 | INFO     | current memory leak: -0.65 B/s (using 257 data points, chi2=0.08)
[2026-03-13 22:27:06] 2026-03-13 21:26:05,888 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-03-13 22:27:06] 2026-03-13 21:26:05,888 | INFO     | ..............................
[2026-03-13 22:27:06] 2026-03-13 21:26:05,888 | INFO     | . Timing measurements:
[2026-03-13 22:27:06] 2026-03-13 21:26:05,888 | INFO     | . get job = 0 s
[2026-03-13 22:27:06] 2026-03-13 21:26:05,888 | INFO     | . initial setup = 107 s
[2026-03-13 22:27:06] 2026-03-13 21:26:05,889 | INFO     | . payload setup = 130 s
[2026-03-13 22:27:06] 2026-03-13 21:26:05,889 | INFO     | . stage-in = 0 s
[2026-03-13 22:27:06] 2026-03-13 21:26:05,889 | INFO     | . payload execution = 17945 s
[2026-03-13 22:27:06] 2026-03-13 21:26:05,889 | INFO     | . stage-out = 4 s
[2026-03-13 22:27:06] 2026-03-13 21:26:05,889 | INFO     | . log creation = 1 s
[2026-03-13 22:27:06] 2026-03-13 21:26:05,889 | INFO     | ..............................
[2026-03-13 22:27:06] 2026-03-13 21:26:06,049 | INFO     | 
[2026-03-13 22:27:06] 2026-03-13 21:26:06,049 | INFO     | job summary report
[2026-03-13 22:27:06] 2026-03-13 21:26:06,049 | INFO     | --------------------------------------------------
[2026-03-13 22:27:06] 2026-03-13 21:26:06,050 | INFO     | PanDA job id: 7052855138
[2026-03-13 22:27:06] 2026-03-13 21:26:06,050 | INFO     | task id: 48967085
[2026-03-13 22:27:06] 2026-03-13 21:26:06,050 | INFO     | errors: (none)
[2026-03-13 22:27:06] 2026-03-13 21:26:06,050 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 22:27:06] 2026-03-13 21:26:06,050 | INFO     | pilot state: finished 
[2026-03-13 22:27:06] 2026-03-13 21:26:06,050 | INFO     | transexitcode: 0
[2026-03-13 22:27:06] 2026-03-13 21:26:06,050 | INFO     | exeerrorcode: 0
[2026-03-13 22:27:06] 2026-03-13 21:26:06,050 | INFO     | exeerrordiag: 
[2026-03-13 22:27:06] 2026-03-13 21:26:06,050 | INFO     | exitcode: 0
[2026-03-13 22:27:06] 2026-03-13 21:26:06,050 | INFO     | exitmsg: OK
[2026-03-13 22:27:06] 2026-03-13 21:26:06,051 | INFO     | cpuconsumptiontime: 68818 s
[2026-03-13 22:27:06] 2026-03-13 21:26:06,051 | INFO     | nevents: 400
[2026-03-13 22:27:06] 2026-03-13 21:26:06,051 | INFO     | neventsw: 0
[2026-03-13 22:27:06] 2026-03-13 21:26:06,051 | INFO     | pid: 3173
[2026-03-13 22:27:06] 2026-03-13 21:26:06,051 | INFO     | pgrp: 3173
[2026-03-13 22:27:06] 2026-03-13 21:26:06,051 | INFO     | corecount: 8
[2026-03-13 22:27:06] 2026-03-13 21:26:06,051 | INFO     | event service: False
[2026-03-13 22:27:06] 2026-03-13 21:26:06,051 | INFO     | sizes: {0: 2279808, 1: 2280269, 12: 2280269, 18080: 2312537, 18085: 2321537, 18087: 2321593, 18089: 2321915}
[2026-03-13 22:27:06] 2026-03-13 21:26:06,051 | INFO     | --------------------------------------------------
[2026-03-13 22:27:06] 2026-03-13 21:26:06,052 | INFO     | 
[2026-03-13 22:27:06] 2026-03-13 21:26:06,052 | INFO     | executing command: ls -lF /var/lib/boinc/slots/20
[2026-03-13 22:27:06] 2026-03-13 21:26:06,523 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,524 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,524 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,524 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,524 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,524 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,524 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,524 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,524 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,525 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,525 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,525 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,526 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 22:27:06] 2026-03-13 21:26:06,526 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,526 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 22:27:06] 2026-03-13 21:26:06,526 | INFO     | job 7052855138 has completed (purged errors)
[2026-03-13 22:27:06] 2026-03-13 21:26:06,526 | INFO     | overall cleanup function is called
[2026-03-13 22:27:06] 2026-03-13 21:26:07,534 | INFO     | --- collectZombieJob: --- 10, [3173]
[2026-03-13 22:27:06] 2026-03-13 21:26:07,535 | INFO     | zombie collector waiting for pid 3173
[2026-03-13 22:27:06] 2026-03-13 21:26:07,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 22:27:06] 2026-03-13 21:26:07,535 | INFO     | collected zombie processes
[2026-03-13 22:27:06] 2026-03-13 21:26:07,535 | INFO     | will attempt to kill all subprocesses of pid=3173
[2026-03-13 22:27:06] 2026-03-13 21:26:07,663 | INFO     | process IDs to be killed: [3173] (in reverse order)
[2026-03-13 22:27:06] 2026-03-13 21:26:08,456 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 22:27:06] 2026-03-13 21:26:08,456 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 22:27:06] 2026-03-13 21:26:08,459 | INFO     | did not find any defunct processes belonging to 3173
[2026-03-13 22:27:06] 2026-03-13 21:26:08,462 | INFO     | did not find any defunct processes belonging to 3173
[2026-03-13 22:27:06] 2026-03-13 21:26:08,462 | INFO     | ready for new job
[2026-03-13 22:27:06] 2026-03-13 21:26:08,463 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 22:27:06] 2026-03-13 21:26:08,465 | INFO     | **************************************
[2026-03-13 22:27:06] 2026-03-13 21:26:08,465 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 22:27:06] 2026-03-13 21:26:08,465 | INFO     | **************************************
[2026-03-13 22:27:06] 2026-03-13 21:26:08,465 | INFO     | 
[2026-03-13 22:27:06] 2026-03-13 21:26:08,466 | INFO     | pilot is running in a VM
[2026-03-13 22:27:06] 2026-03-13 21:26:08,466 | INFO     | architecture information:
[2026-03-13 22:27:06] 2026-03-13 21:26:08,467 | INFO     | executing command: cat /etc/os-release
[2026-03-13 22:27:06] 2026-03-13 21:26:08,669 | INFO     | cat /etc/os-release:
[2026-03-13 22:27:06] NAME="CentOS Linux"
[2026-03-13 22:27:06] VERSION="7 (Core)"
[2026-03-13 22:27:06] ID="centos"
[2026-03-13 22:27:06] ID_LIKE="rhel fedora"
[2026-03-13 22:27:06] VERSION_ID="7"
[2026-03-13 22:27:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 22:27:06] ANSI_COLOR="0;31"
[2026-03-13 22:27:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 22:27:06] HOME_URL="https://www.centos.org/"
[2026-03-13 22:27:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 22:27:06] 
[2026-03-13 22:27:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 22:27:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 22:27:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 22:27:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 22:27:06] 
[2026-03-13 22:27:06] 2026-03-13 21:26:08,669 | INFO     | **************************************
[2026-03-13 22:27:06] 2026-03-13 21:26:09,173 | INFO     | executing command: df -mP /var/lib/boinc/slots/20
[2026-03-13 22:27:06] 2026-03-13 21:26:09,342 | INFO     | sufficient remaining disk space (495799238656 B)
[2026-03-13 22:27:06] 2026-03-13 21:26:09,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 22:27:06] 2026-03-13 21:26:09,343 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 22:27:06] 2026-03-13 21:26:09,343 | INFO     | update_server=False
[2026-03-13 22:27:06] 2026-03-13 21:26:09,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 22:27:06] 2026-03-13 21:26:09,377 | INFO     | all data control threads have been joined
[2026-03-13 22:27:06] 2026-03-13 21:26:09,537 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-13 22:27:06] 2026-03-13 21:26:09,538 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-13 22:27:06] 2026-03-13 21:26:09,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 22:27:06] 2026-03-13 21:26:09,538 | INFO     | will abort loop
[2026-03-13 22:27:06] 2026-03-13 21:26:09,657 | INFO     | all payload control threads have been joined
[2026-03-13 22:27:06] 2026-03-13 21:26:09,911 | INFO     | all job control threads have been joined
[2026-03-13 22:27:06] 2026-03-13 21:26:10,329 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 22:27:06] 2026-03-13 21:26:10,348 | INFO     | [job] retrieve thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:10,384 | INFO     | [data] control thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:10,497 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 22:27:06] 2026-03-13 21:26:10,544 | INFO     | [job] job monitor thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:10,549 | INFO     | [job] validate thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:10,663 | INFO     | [payload] control thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:10,918 | INFO     | [job] control thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:10,921 | INFO     | [payload] validate_post thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:10,989 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:11,065 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 22:27:06] 2026-03-13 21:26:11,356 | INFO     | [data] copytool_in thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:11,418 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:11,447 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:11,671 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:11,937 | INFO     | [payload] failed_post thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:12,071 | INFO     | [job] queue monitor thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:12,336 | INFO     | [data] copytool_out thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:14,507 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 22:27:06] 2026-03-13 21:26:38,525 | INFO     | PID=31033 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 22:27:06] 2026-03-13 21:26:38,525 | INFO     | .. there are 9 such processes running
[2026-03-13 22:27:06] 2026-03-13 21:26:38,526 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 22:27:06] 2026-03-13 21:26:38,526 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 22:27:06] 2026-03-13 21:26:38,526 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 22:27:06] 2026-03-13 21:26:55,288 | INFO     | [monitor] cgroup control has ended
[2026-03-13 22:27:06] 2026-03-13 21:26:56,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140032945366848)>', '<ExcThread(monitor, started 140032727041792)>']
[2026-03-13 22:27:06] 2026-03-13 21:26:56,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 22:27:06] 2026-03-13 21:26:56,634 | INFO     | [monitor] control thread has ended
[2026-03-13 22:27:06] 2026-03-13 21:27:01,189 | INFO     | all workflow threads have been joined
[2026-03-13 22:27:06] 2026-03-13 21:27:01,190 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 22:27:06] 2026-03-13 21:27:01,190 | INFO     | traces error code: 0
[2026-03-13 22:27:06] 2026-03-13 21:27:01,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 22:27:06] 2026-03-13 21:27:01,506 [wrapper] ==== pilot stdout END ====
[2026-03-13 22:27:06] 2026-03-13 21:27:01,575 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 22:27:06] 2026-03-13 21:27:01,609 [wrapper] pilotpid: 31033
[2026-03-13 22:27:06] 2026-03-13 21:27:01,695 [wrapper] Pilot exit status: 0
[2026-03-13 22:27:06] 2026-03-13 21:27:02,170 [wrapper] pandaids: 7052855138
[2026-03-13 22:27:06] 2026-03-13 21:27:03,108 [wrapper] cleanup supervisor_pilot 27416 31034
[2026-03-13 22:27:06] 2026-03-13 21:27:03,153 [wrapper] Test setup, not cleaning
[2026-03-13 22:27:06] 2026-03-13 21:27:03,227 [wrapper] apfmon messages muted
[2026-03-13 22:27:06] 2026-03-13 21:27:03,284 [wrapper] ==== wrapper stdout END ====
[2026-03-13 22:27:06] 2026-03-13 21:27:03,401 [wrapper] ==== wrapper stderr END ====
[2026-03-13 22:27:06]  *** Error codes and diagnostics ***
[2026-03-13 22:27:06]     "exeErrorCode": 0,
[2026-03-13 22:27:06]     "exeErrorDiag": "",
[2026-03-13 22:27:06]     "pilotErrorCode": 0,
[2026-03-13 22:27:06]     "pilotErrorDiag": "",
[2026-03-13 22:27:06]  *** Listing of results directory ***
[2026-03-13 22:27:06] total 407660
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc    585013 Mar 13 04:13 pilot3.tar.gz
[2026-03-13 22:27:06] -rwx------. 1 boinc boinc     36322 Mar 13 04:13 runpilot2-wrapper.sh
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc      5111 Mar 13 04:13 queuedata.json
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc       100 Mar 13 17:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 22:27:06] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 17:18 run_atlas
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc       105 Mar 13 17:18 job.xml
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc      6392 Mar 13 17:18 init_data.xml
[2026-03-13 22:27:06] -rw-r--r--. 2 boinc boinc 210785077 Mar 13 17:18 EVNT.48967083._000666.pool.root.1
[2026-03-13 22:27:06] -rw-r--r--. 2 boinc boinc     15845 Mar 13 17:18 start_atlas.sh
[2026-03-13 22:27:06] drwxrwx--x. 2 boinc boinc        68 Mar 13 17:18 shared
[2026-03-13 22:27:06] -rw-r--r--. 2 boinc boinc    597522 Mar 13 17:18 input.tar.gz
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc         0 Mar 13 17:18 boinc_lockfile
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc      2562 Mar 13 17:18 pandaJob.out
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc       415 Mar 13 17:24 workernode_map.json
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc   1006597 Mar 13 17:24 agis_schedconf.cvmfs.json
[2026-03-13 22:27:06] drwx------. 5 boinc boinc      4096 Mar 13 17:24 pilot3
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc 196712945 Mar 13 22:24 HITS.48967085._016624.pool.root.1
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc       531 Mar 13 22:25 boinc_task_state.xml
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc      1015 Mar 13 22:25 memory_monitor_summary.json
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc   1511579 Mar 13 22:25 agis_ddmendpoints.agis.ALL.json
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc    500343 Mar 13 22:26 log.48967085._016624.job.log.tgz.1
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc      6320 Mar 13 22:26 heartbeat.json
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc        95 Mar 13 22:26 pilot_heartbeat.json
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc      8192 Mar 13 22:26 boinc_mmap_file
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc        28 Mar 13 22:26 wrapper_checkpoint.txt
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc      5067 Mar 13 22:27 pilotlog.txt
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc   2509435 Mar 13 22:27 log.48967085._016624.job.log.1
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc       357 Mar 13 22:27 output.list
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc       620 Mar 13 22:27 runtime_log
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc   3031040 Mar 13 22:27 result.tar.gz
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc      8832 Mar 13 22:27 runtime_log.err
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc       656 Mar 13 22:27 eAFODmi87K9n9Rq4apOajLDm4fhM0noT9bVooX4SDmXslLDmp4K4Hm.diag
[2026-03-13 22:27:06] -rw-r--r--. 1 boinc boinc     20716 Mar 13 22:27 stderr.txt
[2026-03-13 22:27:06] HITS file was successfully produced:
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc 196712945 Mar 13 22:24 shared/HITS.pool.root.1
[2026-03-13 22:27:06]  *** Contents of shared directory: ***
[2026-03-13 22:27:06] total 401512
[2026-03-13 22:27:06] -rw-r--r--. 2 boinc boinc 210785077 Mar 13 17:18 ATLAS.root_0
[2026-03-13 22:27:06] -rw-r--r--. 2 boinc boinc     15845 Mar 13 17:18 start_atlas.sh
[2026-03-13 22:27:06] -rw-r--r--. 2 boinc boinc    597522 Mar 13 17:18 input.tar.gz
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc 196712945 Mar 13 22:24 HITS.pool.root.1
[2026-03-13 22:27:06] -rw-------. 1 boinc boinc   3031040 Mar 13 22:27 result.tar.gz
22:27:08 (26916): run_atlas exited; CPU time 69107.510500
22:27:08 (26916): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN