Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:54:31 (5120): wrapper (7.7.26015): starting
10:54:31 (5120): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 10:54:31] Arguments: --nthreads 8
[2026-03-13 10:54:31] Threads: 8
[2026-03-13 10:54:31] Checking for CVMFS
[2026-03-13 10:54:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 10:54:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 10:54:33] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 10:54:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 10:54:34] 2.11.2.0 22677 125980 132168 157234 0 94 24039536 25165824 1081 130560 147 29959987 99.857 18834013 700 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 10:54:34] CVMFS is ok
[2026-03-13 10:54:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 10:54:34] Checking for apptainer binary...
[2026-03-13 10:54:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 10:54:34] Running /usr/bin/apptainer --version
[2026-03-13 10:54:35] apptainer version 1.3.2-1.el7
[2026-03-13 10:54:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 10:54:51] cg-vwn370.simple-grid.lan
[2026-03-13 10:54:51] apptainer works
[2026-03-13 10:54:51] Set ATHENA_PROC_NUMBER=8
[2026-03-13 10:54:51] Set ATHENA_CORE_NUMBER=8
[2026-03-13 10:54:51] Starting ATLAS job with PandaID=7043586228
[2026-03-13 10:54:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 14:38:27]  *** The last 200 lines of the pilot log: ***
[2026-03-13 14:38:27] 2026-03-13 13:37:29,673 | INFO     | sum of square deviations: 2593916542.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,674 | INFO     | sum of deviations: 138443947083.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,675 | INFO     | mean x: 1773402521.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,675 | INFO     | mean y: 2385926.2413793104
[2026-03-13 14:38:27] 2026-03-13 13:37:29,675 | INFO     | intersect: -94648633410.28699
[2026-03-13 14:38:27] 2026-03-13 13:37:29,675 | INFO     | chi2: 8.793491778368882
[2026-03-13 14:38:27] 2026-03-13 13:37:29,675 | INFO     | current chi2=8.793491778368882 (change=-0.1956389572981181 %)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,675 | INFO     | right removable region: 202
[2026-03-13 14:38:27] 2026-03-13 13:37:29,676 | INFO     | sum of square deviations: 2593916542.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,677 | INFO     | sum of deviations: 69521802297.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,677 | INFO     | mean x: 1773402826.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,678 | INFO     | mean y: 2444903.339901478
[2026-03-13 14:38:27] 2026-03-13 13:37:29,678 | INFO     | intersect: -47528059130.167694
[2026-03-13 14:38:27] 2026-03-13 13:37:29,678 | INFO     | chi2: 3.3623038580558684
[2026-03-13 14:38:27] 2026-03-13 13:37:29,678 | INFO     | current chi2=3.3623038580558684 (change=61.68891813202033 %)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,679 | INFO     | sum of square deviations: 2406926989.5
[2026-03-13 14:38:27] 2026-03-13 13:37:29,680 | INFO     | sum of deviations: 13256403855.999996
[2026-03-13 14:38:27] 2026-03-13 13:37:29,680 | INFO     | mean x: 1773402978.5
[2026-03-13 14:38:27] 2026-03-13 13:37:29,680 | INFO     | mean y: 2490726.777777778
[2026-03-13 14:38:27] 2026-03-13 13:37:29,680 | INFO     | intersect: -9764712925.424767
[2026-03-13 14:38:27] 2026-03-13 13:37:29,681 | INFO     | chi2: 0.39552475700814904
[2026-03-13 14:38:27] 2026-03-13 13:37:29,681 | INFO     | current chi2=0.39552475700814904 (change=88.236495756905 %)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,681 | INFO     | sum of square deviations: 2229146912.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,683 | INFO     | sum of deviations: -3793416638.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,683 | INFO     | mean x: 1773403131.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,683 | INFO     | mean y: 2505256.3264248706
[2026-03-13 14:38:27] 2026-03-13 13:37:29,683 | INFO     | intersect: 3020366890.6594315
[2026-03-13 14:38:27] 2026-03-13 13:37:29,684 | INFO     | chi2: 0.04531989059033389
[2026-03-13 14:38:27] 2026-03-13 13:37:29,684 | INFO     | current chi2=0.04531989059033389 (change=88.54183213886657 %)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,684 | INFO     | sum of square deviations: 2060343747.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,686 | INFO     | sum of deviations: -7783876207.999999
[2026-03-13 14:38:27] 2026-03-13 13:37:29,686 | INFO     | mean x: 1773403283.5
[2026-03-13 14:38:27] 2026-03-13 13:37:29,686 | INFO     | mean y: 2508812.255319149
[2026-03-13 14:38:27] 2026-03-13 13:37:29,686 | INFO     | intersect: 6702338219.714252
[2026-03-13 14:38:27] 2026-03-13 13:37:29,687 | INFO     | chi2: 0.010717282633727464
[2026-03-13 14:38:27] 2026-03-13 13:37:29,687 | INFO     | current chi2=0.010717282633727464 (change=76.35192297658963 %)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,687 | INFO     | sum of square deviations: 1900284932.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,689 | INFO     | sum of deviations: -7578451266.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,689 | INFO     | mean x: 1773403436.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,689 | INFO     | mean y: 2508614.06010929
[2026-03-13 14:38:27] 2026-03-13 13:37:29,689 | INFO     | intersect: 7074948798.35293
[2026-03-13 14:38:27] 2026-03-13 13:37:29,690 | INFO     | chi2: 0.010511170889655034
[2026-03-13 14:38:27] 2026-03-13 13:37:29,690 | INFO     | current chi2=0.010511170889655034 (change=1.923171676221298 %)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,690 | INFO     | left removable region: 50
[2026-03-13 14:38:27] 2026-03-13 13:37:29,691 | INFO     | sum of square deviations: 1088905998.0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,692 | INFO     | sum of deviations: -2015185446.999999
[2026-03-13 14:38:27] 2026-03-13 13:37:29,692 | INFO     | mean x: 1773404015.5
[2026-03-13 14:38:27] 2026-03-13 13:37:29,692 | INFO     | mean y: 2502330.1710526315
[2026-03-13 14:38:27] 2026-03-13 13:37:29,692 | INFO     | intersect: 3284455015.0225143
[2026-03-13 14:38:27] 2026-03-13 13:37:29,693 | INFO     | chi2: 0.006896458056340742
[2026-03-13 14:38:27] 2026-03-13 13:37:29,693 | INFO     | current memory leak: -1.85 B/s (using 152 data points, chi2=0.01)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,694 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,694 | INFO     | ..............................
[2026-03-13 14:38:27] 2026-03-13 13:37:29,694 | INFO     | . Timing measurements:
[2026-03-13 14:38:27] 2026-03-13 13:37:29,694 | INFO     | . get job = 0 s
[2026-03-13 14:38:27] 2026-03-13 13:37:29,694 | INFO     | . initial setup = 117 s
[2026-03-13 14:38:27] 2026-03-13 13:37:29,694 | INFO     | . payload setup = 158 s
[2026-03-13 14:38:27] 2026-03-13 13:37:29,695 | INFO     | . stage-in = 0 s
[2026-03-13 14:38:27] 2026-03-13 13:37:29,695 | INFO     | . payload execution = 12810 s
[2026-03-13 14:38:27] 2026-03-13 13:37:29,695 | INFO     | . stage-out = 1 s
[2026-03-13 14:38:27] 2026-03-13 13:37:29,695 | INFO     | . log creation = 0 s
[2026-03-13 14:38:27] 2026-03-13 13:37:29,695 | INFO     | ..............................
[2026-03-13 14:38:27] 2026-03-13 13:37:29,806 | INFO     | 
[2026-03-13 14:38:27] 2026-03-13 13:37:29,807 | INFO     | job summary report
[2026-03-13 14:38:27] 2026-03-13 13:37:29,807 | INFO     | --------------------------------------------------
[2026-03-13 14:38:27] 2026-03-13 13:37:29,807 | INFO     | PanDA job id: 7043586228
[2026-03-13 14:38:27] 2026-03-13 13:37:29,807 | INFO     | task id: 48955010
[2026-03-13 14:38:27] 2026-03-13 13:37:29,807 | INFO     | errors: (none)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,807 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 14:38:27] 2026-03-13 13:37:29,807 | INFO     | pilot state: finished 
[2026-03-13 14:38:27] 2026-03-13 13:37:29,807 | INFO     | transexitcode: 0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,807 | INFO     | exeerrorcode: 0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,807 | INFO     | exeerrordiag: 
[2026-03-13 14:38:27] 2026-03-13 13:37:29,808 | INFO     | exitcode: 0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,808 | INFO     | exitmsg: OK
[2026-03-13 14:38:27] 2026-03-13 13:37:29,808 | INFO     | cpuconsumptiontime: 54792 s
[2026-03-13 14:38:27] 2026-03-13 13:37:29,808 | INFO     | nevents: 400
[2026-03-13 14:38:27] 2026-03-13 13:37:29,808 | INFO     | neventsw: 0
[2026-03-13 14:38:27] 2026-03-13 13:37:29,808 | INFO     | pid: 13612
[2026-03-13 14:38:27] 2026-03-13 13:37:29,808 | INFO     | pgrp: 13612
[2026-03-13 14:38:27] 2026-03-13 13:37:29,808 | INFO     | corecount: 8
[2026-03-13 14:38:27] 2026-03-13 13:37:29,808 | INFO     | event service: False
[2026-03-13 14:38:27] 2026-03-13 13:37:29,808 | INFO     | sizes: {0: 2279091, 1: 2279776, 2: 2280237, 13: 2280237, 12971: 2310279, 12973: 2319277, 12975: 2319461, 12977: 2319655}
[2026-03-13 14:38:27] 2026-03-13 13:37:29,809 | INFO     | --------------------------------------------------
[2026-03-13 14:38:27] 2026-03-13 13:37:29,809 | INFO     | 
[2026-03-13 14:38:27] 2026-03-13 13:37:29,809 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-03-13 14:38:27] 2026-03-13 13:37:29,837 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,837 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,837 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,837 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,837 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,838 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,838 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,838 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,838 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,838 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,838 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,838 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,838 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,839 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,839 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,839 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,839 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,839 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,839 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,839 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 14:38:27] 2026-03-13 13:37:29,839 | INFO     | job 7043586228 has completed (purged errors)
[2026-03-13 14:38:27] 2026-03-13 13:37:29,840 | INFO     | overall cleanup function is called
[2026-03-13 14:38:27] 2026-03-13 13:37:30,542 | INFO     | PID=9124 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-13 14:38:27] 2026-03-13 13:37:30,543 | INFO     | .. there are 2 such processes running
[2026-03-13 14:38:27] 2026-03-13 13:37:30,848 | INFO     | --- collectZombieJob: --- 10, [13612]
[2026-03-13 14:38:27] 2026-03-13 13:37:30,849 | INFO     | zombie collector waiting for pid 13612
[2026-03-13 14:38:27] 2026-03-13 13:37:30,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 14:38:27] 2026-03-13 13:37:30,849 | INFO     | collected zombie processes
[2026-03-13 14:38:27] 2026-03-13 13:37:30,849 | INFO     | will attempt to kill all subprocesses of pid=13612
[2026-03-13 14:38:27] 2026-03-13 13:37:30,922 | INFO     | process IDs to be killed: [13612] (in reverse order)
[2026-03-13 14:38:27] 2026-03-13 13:37:31,003 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 14:38:27] 2026-03-13 13:37:31,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 14:38:27] 2026-03-13 13:37:31,005 | INFO     | did not find any defunct processes belonging to 13612
[2026-03-13 14:38:27] 2026-03-13 13:37:31,007 | INFO     | did not find any defunct processes belonging to 13612
[2026-03-13 14:38:27] 2026-03-13 13:37:31,007 | INFO     | ready for new job
[2026-03-13 14:38:27] 2026-03-13 13:37:31,008 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 14:38:27] 2026-03-13 13:37:31,009 | INFO     | **************************************
[2026-03-13 14:38:27] 2026-03-13 13:37:31,010 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 14:38:27] 2026-03-13 13:37:31,010 | INFO     | **************************************
[2026-03-13 14:38:27] 2026-03-13 13:37:31,010 | INFO     | 
[2026-03-13 14:38:27] 2026-03-13 13:37:31,010 | INFO     | pilot is running in a VM
[2026-03-13 14:38:27] 2026-03-13 13:37:31,011 | INFO     | architecture information:
[2026-03-13 14:38:27] 2026-03-13 13:37:31,011 | INFO     | executing command: cat /etc/os-release
[2026-03-13 14:38:27] 2026-03-13 13:37:31,032 | INFO     | cat /etc/os-release:
[2026-03-13 14:38:27] NAME="CentOS Linux"
[2026-03-13 14:38:27] VERSION="7 (Core)"
[2026-03-13 14:38:27] ID="centos"
[2026-03-13 14:38:27] ID_LIKE="rhel fedora"
[2026-03-13 14:38:27] VERSION_ID="7"
[2026-03-13 14:38:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 14:38:27] ANSI_COLOR="0;31"
[2026-03-13 14:38:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 14:38:27] HOME_URL="https://www.centos.org/"
[2026-03-13 14:38:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 14:38:27] 
[2026-03-13 14:38:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 14:38:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 14:38:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 14:38:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 14:38:27] 
[2026-03-13 14:38:27] 2026-03-13 13:37:31,033 | INFO     | **************************************
[2026-03-13 14:38:27] 2026-03-13 13:37:31,536 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-03-13 14:38:27] 2026-03-13 13:37:31,565 | INFO     | sufficient remaining disk space (496444112896 B)
[2026-03-13 14:38:27] 2026-03-13 13:37:31,566 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 14:38:27] 2026-03-13 13:37:31,566 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 14:38:27] 2026-03-13 13:37:31,566 | INFO     | update_server=False
[2026-03-13 14:38:27] 2026-03-13 13:37:31,566 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 14:38:27] 2026-03-13 13:37:31,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 14:38:27] 2026-03-13 13:37:31,567 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 14:38:27] 2026-03-13 13:37:31,568 | INFO     | aborting loop
[2026-03-13 14:38:27] 2026-03-13 13:37:31,815 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 14:38:27] 2026-03-13 13:37:31,970 | INFO     | all data control threads have been joined
[2026-03-13 14:38:27] 2026-03-13 13:37:32,232 | INFO     | all payload control threads have been joined
[2026-03-13 14:38:27] 2026-03-13 13:37:32,398 | INFO     | all job control threads have been joined
[2026-03-13 14:38:27] 2026-03-13 13:37:32,572 | INFO     | [job] retrieve thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:32,573 | INFO     | [job] queue monitor thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:32,573 | INFO     | [job] job monitor thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:32,803 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:32,976 | INFO     | [data] control thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:33,131 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:33,238 | INFO     | [payload] control thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:33,357 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:33,404 | INFO     | [payload] failed_post thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:33,405 | INFO     | [job] control thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:33,751 | INFO     | [payload] validate_post thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:33,821 | INFO     | [data] copytool_out thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:33,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 14:38:27] 2026-03-13 13:37:33,888 | INFO     | [job] validate thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:34,069 | INFO     | [data] copytool_in thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:34,070 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:37:37,872 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 14:38:27] 2026-03-13 13:38:02,634 | INFO     | PID=9124 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-13 14:38:27] 2026-03-13 13:38:02,634 | INFO     | .. there are 2 such processes running
[2026-03-13 14:38:27] 2026-03-13 13:38:02,634 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 14:38:27] 2026-03-13 13:38:02,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 14:38:27] 2026-03-13 13:38:02,634 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 14:38:27] 2026-03-13 13:38:21,814 | INFO     | [monitor] cgroup control has ended
[2026-03-13 14:38:27] 2026-03-13 13:38:22,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140311277606720)>', '<ExcThread(monitor, started 140310533367552)>']
[2026-03-13 14:38:27] 2026-03-13 13:38:22,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 14:38:27] 2026-03-13 13:38:22,738 | INFO     | [monitor] control thread has ended
[2026-03-13 14:38:27] 2026-03-13 13:38:27,072 | INFO     | all workflow threads have been joined
[2026-03-13 14:38:27] 2026-03-13 13:38:27,072 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 14:38:27] 2026-03-13 13:38:27,072 | INFO     | traces error code: 0
[2026-03-13 14:38:27] 2026-03-13 13:38:27,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 14:38:27] 2026-03-13 13:38:27,212 [wrapper] ==== pilot stdout END ====
[2026-03-13 14:38:27] 2026-03-13 13:38:27,219 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 14:38:27] 2026-03-13 13:38:27,233 [wrapper] pilotpid: 9124
[2026-03-13 14:38:27] 2026-03-13 13:38:27,237 [wrapper] Pilot exit status: 0
[2026-03-13 14:38:27] 2026-03-13 13:38:27,274 [wrapper] pandaids: 7043586228
[2026-03-13 14:38:27] 2026-03-13 13:38:27,366 [wrapper] cleanup supervisor_pilot 20801 9125
[2026-03-13 14:38:27] 2026-03-13 13:38:27,373 [wrapper] Test setup, not cleaning
[2026-03-13 14:38:27] 2026-03-13 13:38:27,378 [wrapper] apfmon messages muted
[2026-03-13 14:38:27] 2026-03-13 13:38:27,382 [wrapper] ==== wrapper stdout END ====
[2026-03-13 14:38:27] 2026-03-13 13:38:27,388 [wrapper] ==== wrapper stderr END ====
[2026-03-13 14:38:27]  *** Error codes and diagnostics ***
[2026-03-13 14:38:27]     "exeErrorCode": 0,
[2026-03-13 14:38:27]     "exeErrorDiag": "",
[2026-03-13 14:38:27]     "pilotErrorCode": 0,
[2026-03-13 14:38:27]     "pilotErrorDiag": "",
[2026-03-13 14:38:27]  *** Listing of results directory ***
[2026-03-13 14:38:27] total 621208
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc    585013 Mar 12 21:48 pilot3.tar.gz
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc      5111 Mar 12 22:10 queuedata.json
[2026-03-13 14:38:27] -rwx------. 1 boinc boinc     36322 Mar 12 22:10 runpilot2-wrapper.sh
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc       100 Mar 13 10:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 14:38:27] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 10:54 run_atlas
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc       105 Mar 13 10:54 job.xml
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc      6391 Mar 13 10:54 init_data.xml
[2026-03-13 14:38:27] -rw-r--r--. 2 boinc boinc 441315684 Mar 13 10:54 EVNT.46701403._001502.pool.root.1
[2026-03-13 14:38:27] -rw-r--r--. 2 boinc boinc     15845 Mar 13 10:54 start_atlas.sh
[2026-03-13 14:38:27] drwxrwx--x. 2 boinc boinc        68 Mar 13 10:54 shared
[2026-03-13 14:38:27] -rw-r--r--. 2 boinc boinc    597534 Mar 13 10:54 input.tar.gz
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc         0 Mar 13 10:54 boinc_lockfile
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc      2564 Mar 13 10:54 pandaJob.out
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc       415 Mar 13 11:00 workernode_map.json
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc   1006487 Mar 13 11:01 agis_schedconf.cvmfs.json
[2026-03-13 14:38:27] drwx------. 5 boinc boinc      4096 Mar 13 11:01 pilot3
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc 186258084 Mar 13 14:36 HITS.48955010._025412.pool.root.1
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc        95 Mar 13 14:37 pilot_heartbeat.json
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc       531 Mar 13 14:37 boinc_task_state.xml
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc      1022 Mar 13 14:37 memory_monitor_summary.json
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc   1511578 Mar 13 14:37 agis_ddmendpoints.agis.ALL.json
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc    472895 Mar 13 14:37 log.48955010._025412.job.log.tgz.1
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc      6331 Mar 13 14:37 heartbeat.json
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc      8192 Mar 13 14:38 boinc_mmap_file
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc        28 Mar 13 14:38 wrapper_checkpoint.txt
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc      4879 Mar 13 14:38 pilotlog.txt
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc   1837094 Mar 13 14:38 log.48955010._025412.job.log.1
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc       357 Mar 13 14:38 output.list
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc       620 Mar 13 14:38 runtime_log
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc   2324480 Mar 13 14:38 result.tar.gz
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc      8816 Mar 13 14:38 runtime_log.err
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc       655 Mar 13 14:38 9BQKDmyT2K9n9Rq4apOajLDm4fhM0noT9bVooX4SDmPIlLDmwUdEXo.diag
[2026-03-13 14:38:27] -rw-r--r--. 1 boinc boinc     20728 Mar 13 14:38 stderr.txt
[2026-03-13 14:38:27] HITS file was successfully produced:
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc 186258084 Mar 13 14:36 shared/HITS.pool.root.1
[2026-03-13 14:38:27]  *** Contents of shared directory: ***
[2026-03-13 14:38:27] total 615744
[2026-03-13 14:38:27] -rw-r--r--. 2 boinc boinc 441315684 Mar 13 10:54 ATLAS.root_0
[2026-03-13 14:38:27] -rw-r--r--. 2 boinc boinc     15845 Mar 13 10:54 start_atlas.sh
[2026-03-13 14:38:27] -rw-r--r--. 2 boinc boinc    597534 Mar 13 10:54 input.tar.gz
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc 186258084 Mar 13 14:36 HITS.pool.root.1
[2026-03-13 14:38:27] -rw-------. 1 boinc boinc   2324480 Mar 13 14:38 result.tar.gz
14:38:28 (5120): run_atlas exited; CPU time 54938.803839
14:38:28 (5120): called boinc_finish(0)

</stderr_txt>
]]>

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