Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:00:13 (30321): wrapper (7.7.26015): starting
11:00:13 (30321): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 11:00:13] Arguments: --nthreads 8
[2026-03-13 11:00:13] Threads: 8
[2026-03-13 11:00:13] Checking for CVMFS
[2026-03-13 11:00:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 11:00:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 11:00:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 11:00:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 11:00:15] 2.11.2.0 27430 125989 134556 157234 3 130 23594398 25165824 1086 130560 158 36877440 99.831 26945818 1006 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 11:00:15] CVMFS is ok
[2026-03-13 11:00:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 11:00:15] Checking for apptainer binary...
[2026-03-13 11:00:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 11:00:15] Running /usr/bin/apptainer --version
[2026-03-13 11:00:15] apptainer version 1.3.2-1.el7
[2026-03-13 11:00:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 11:00:33] cg-vwn400.simple-grid.lan
[2026-03-13 11:00:33] apptainer works
[2026-03-13 11:00:33] Set ATHENA_PROC_NUMBER=8
[2026-03-13 11:00:33] Set ATHENA_CORE_NUMBER=8
[2026-03-13 11:00:33] Starting ATLAS job with PandaID=7052335923
[2026-03-13 11:00:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 17:19:42]  *** The last 200 lines of the pilot log: ***
[2026-03-13 17:19:42] 2026-03-13 16:18:47,845 | INFO     | job 7052335923 has finished - writing final server update
[2026-03-13 17:19:42] 2026-03-13 16:18:47,845 | INFO     | total number of processed events: 400 (read)
[2026-03-13 17:19:42] 2026-03-13 16:18:47,847 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-7052335923/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 17:19:42] 2026-03-13 16:18:47,848 | INFO     | extracted standard info from prmon json
[2026-03-13 17:19:42] 2026-03-13 16:18:47,848 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 17:19:42] 2026-03-13 16:18:47,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 17:19:42] 2026-03-13 16:18:47,849 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 17:19:42] 2026-03-13 16:18:47,849 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 17:19:42] 2026-03-13 16:18:47,856 | INFO     | fitting pss+swap vs Time
[2026-03-13 17:19:42] 2026-03-13 16:18:47,857 | INFO     | sum of square deviations: 14588031660.0
[2026-03-13 17:19:42] 2026-03-13 16:18:47,860 | INFO     | sum of deviations: 188844372851.00006
[2026-03-13 17:19:42] 2026-03-13 16:18:47,861 | INFO     | mean x: 1773407702.0
[2026-03-13 17:19:42] 2026-03-13 16:18:47,861 | INFO     | mean y: 2482325.675900277
[2026-03-13 17:19:42] 2026-03-13 16:18:47,861 | INFO     | intersect: -22954560344.556637
[2026-03-13 17:19:42] 2026-03-13 16:18:47,862 | INFO     | chi2: 8.669834225278063
[2026-03-13 17:19:42] 2026-03-13 16:18:47,862 | INFO     | sum of square deviations: 13990234405.0
[2026-03-13 17:19:42] 2026-03-13 16:18:47,866 | INFO     | sum of deviations: 210290736381.00003
[2026-03-13 17:19:42] 2026-03-13 16:18:47,866 | INFO     | mean x: 1773407549.5
[2026-03-13 17:19:42] 2026-03-13 16:18:47,867 | INFO     | mean y: 2487727.04494382
[2026-03-13 17:19:42] 2026-03-13 16:18:47,867 | INFO     | intersect: -26654047731.33859
[2026-03-13 17:19:42] 2026-03-13 16:18:47,867 | INFO     | chi2: 7.951258779764366
[2026-03-13 17:19:42] 2026-03-13 16:18:47,867 | INFO     | current chi2=7.951258779764366 (change=8.288225897314087 %)
[2026-03-13 17:19:42] 2026-03-13 16:18:47,868 | INFO     | right removable region: 355
[2026-03-13 17:19:42] 2026-03-13 16:18:47,868 | INFO     | sum of square deviations: 13990234405.0
[2026-03-13 17:19:42] 2026-03-13 16:18:47,872 | INFO     | sum of deviations: 58992944144.99999
[2026-03-13 17:19:42] 2026-03-13 16:18:47,872 | INFO     | mean x: 1773407854.5
[2026-03-13 17:19:42] 2026-03-13 16:18:47,873 | INFO     | mean y: 2515438.8988764044
[2026-03-13 17:19:42] 2026-03-13 16:18:47,873 | INFO     | intersect: -7475454370.487086
[2026-03-13 17:19:42] 2026-03-13 16:18:47,873 | INFO     | chi2: 3.676580526645212
[2026-03-13 17:19:42] 2026-03-13 16:18:47,873 | INFO     | current chi2=3.676580526645212 (change=57.59341607794934 %)
[2026-03-13 17:19:42] 2026-03-13 16:18:47,874 | INFO     | sum of square deviations: 13408995600.0
[2026-03-13 17:19:42] 2026-03-13 16:18:47,878 | INFO     | sum of deviations: -37691237357.0
[2026-03-13 17:19:42] 2026-03-13 16:18:47,878 | INFO     | mean x: 1773408007.0
[2026-03-13 17:19:42] 2026-03-13 16:18:47,879 | INFO     | mean y: 2540778.5242165243
[2026-03-13 17:19:42] 2026-03-13 16:18:47,879 | INFO     | intersect: 4987399012.249144
[2026-03-13 17:19:42] 2026-03-13 16:18:47,879 | INFO     | chi2: 1.0218941983842835
[2026-03-13 17:19:42] 2026-03-13 16:18:47,879 | INFO     | current chi2=1.0218941983842835 (change=72.20530895547292 %)
[2026-03-13 17:19:42] 2026-03-13 16:18:47,880 | INFO     | sum of square deviations: 12844082682.5
[2026-03-13 17:19:42] 2026-03-13 16:18:47,884 | INFO     | sum of deviations: -57582418087.000015
[2026-03-13 17:19:42] 2026-03-13 16:18:47,884 | INFO     | mean x: 1773408159.5
[2026-03-13 17:19:42] 2026-03-13 16:18:47,884 | INFO     | mean y: 2546129.7803468206
[2026-03-13 17:19:42] 2026-03-13 16:18:47,884 | INFO     | intersect: 7953065649.431236
[2026-03-13 17:19:42] 2026-03-13 16:18:47,885 | INFO     | chi2: 0.8753061419952575
[2026-03-13 17:19:42] 2026-03-13 16:18:47,885 | INFO     | current chi2=0.8753061419952575 (change=14.344739075806123 %)
[2026-03-13 17:19:42] 2026-03-13 16:18:47,885 | INFO     | left removable region: 30
[2026-03-13 17:19:42] 2026-03-13 16:18:47,886 | INFO     | sum of square deviations: 10644478650.0
[2026-03-13 17:19:42] 2026-03-13 16:18:47,889 | INFO     | sum of deviations: -21178044598.999996
[2026-03-13 17:19:42] 2026-03-13 16:18:47,889 | INFO     | mean x: 1773408434.0
[2026-03-13 17:19:42] 2026-03-13 16:18:47,889 | INFO     | mean y: 2549005.0984615386
[2026-03-13 17:19:42] 2026-03-13 16:18:47,889 | INFO     | intersect: 3530887418.130531
[2026-03-13 17:19:42] 2026-03-13 16:18:47,890 | INFO     | chi2: 0.0815573563159362
[2026-03-13 17:19:42] 2026-03-13 16:18:47,890 | INFO     | current memory leak: -1.99 B/s (using 325 data points, chi2=0.08)
[2026-03-13 17:19:42] 2026-03-13 16:18:47,891 | INFO     | could have reported an average CPU frequency of 1999 MHz (16 samples)
[2026-03-13 17:19:42] 2026-03-13 16:18:47,891 | INFO     | ..............................
[2026-03-13 17:19:42] 2026-03-13 16:18:47,891 | INFO     | . Timing measurements:
[2026-03-13 17:19:42] 2026-03-13 16:18:47,891 | INFO     | . get job = 0 s
[2026-03-13 17:19:42] 2026-03-13 16:18:47,892 | INFO     | . initial setup = 115 s
[2026-03-13 17:19:42] 2026-03-13 16:18:47,892 | INFO     | . payload setup = 159 s
[2026-03-13 17:19:42] 2026-03-13 16:18:47,892 | INFO     | . stage-in = 0 s
[2026-03-13 17:19:42] 2026-03-13 16:18:47,892 | INFO     | . payload execution = 22130 s
[2026-03-13 17:19:42] 2026-03-13 16:18:47,892 | INFO     | . stage-out = 4 s
[2026-03-13 17:19:42] 2026-03-13 16:18:47,892 | INFO     | . log creation = 1 s
[2026-03-13 17:19:42] 2026-03-13 16:18:47,892 | INFO     | ..............................
[2026-03-13 17:19:42] 2026-03-13 16:18:48,065 | INFO     | time since job start (22317s) is within the limit (345600.0s)
[2026-03-13 17:19:42] 2026-03-13 16:18:48,322 | INFO     | 
[2026-03-13 17:19:42] 2026-03-13 16:18:48,322 | INFO     | job summary report
[2026-03-13 17:19:42] 2026-03-13 16:18:48,322 | INFO     | --------------------------------------------------
[2026-03-13 17:19:42] 2026-03-13 16:18:48,322 | INFO     | PanDA job id: 7052335923
[2026-03-13 17:19:42] 2026-03-13 16:18:48,322 | INFO     | task id: 48851653
[2026-03-13 17:19:42] 2026-03-13 16:18:48,322 | INFO     | errors: (none)
[2026-03-13 17:19:42] 2026-03-13 16:18:48,322 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 17:19:42] 2026-03-13 16:18:48,323 | INFO     | pilot state: finished 
[2026-03-13 17:19:42] 2026-03-13 16:18:48,323 | INFO     | transexitcode: 0
[2026-03-13 17:19:42] 2026-03-13 16:18:48,323 | INFO     | exeerrorcode: 0
[2026-03-13 17:19:42] 2026-03-13 16:18:48,323 | INFO     | exeerrordiag: 
[2026-03-13 17:19:42] 2026-03-13 16:18:48,323 | INFO     | exitcode: 0
[2026-03-13 17:19:42] 2026-03-13 16:18:48,323 | INFO     | exitmsg: OK
[2026-03-13 17:19:42] 2026-03-13 16:18:48,323 | INFO     | cpuconsumptiontime: 81729 s
[2026-03-13 17:19:42] 2026-03-13 16:18:48,323 | INFO     | nevents: 400
[2026-03-13 17:19:42] 2026-03-13 16:18:48,323 | INFO     | neventsw: 0
[2026-03-13 17:19:42] 2026-03-13 16:18:48,323 | INFO     | pid: 6382
[2026-03-13 17:19:42] 2026-03-13 16:18:48,324 | INFO     | pgrp: 6382
[2026-03-13 17:19:42] 2026-03-13 16:18:48,324 | INFO     | corecount: 8
[2026-03-13 17:19:42] 2026-03-13 16:18:48,324 | INFO     | event service: False
[2026-03-13 17:19:42] 2026-03-13 16:18:48,324 | INFO     | sizes: {0: 2279775, 1: 2280232, 2: 2280292, 12: 2280320, 22294: 2314794, 22299: 2323794, 22303: 2323978, 22304: 2324172}
[2026-03-13 17:19:42] 2026-03-13 16:18:48,324 | INFO     | --------------------------------------------------
[2026-03-13 17:19:42] 2026-03-13 16:18:48,324 | INFO     | 
[2026-03-13 17:19:42] 2026-03-13 16:18:48,324 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2026-03-13 17:19:42] 2026-03-13 16:18:48,950 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,950 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,951 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,951 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,951 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,951 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,951 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,951 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,951 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,951 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,952 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,952 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,952 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,952 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,952 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 17:19:42] 2026-03-13 16:18:48,952 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,953 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 17:19:42] 2026-03-13 16:18:48,953 | INFO     | job 7052335923 has completed (purged errors)
[2026-03-13 17:19:42] 2026-03-13 16:18:48,953 | INFO     | overall cleanup function is called
[2026-03-13 17:19:42] 2026-03-13 16:18:49,962 | INFO     | --- collectZombieJob: --- 10, [6382]
[2026-03-13 17:19:42] 2026-03-13 16:18:49,962 | INFO     | zombie collector waiting for pid 6382
[2026-03-13 17:19:42] 2026-03-13 16:18:49,962 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 17:19:42] 2026-03-13 16:18:49,962 | INFO     | collected zombie processes
[2026-03-13 17:19:42] 2026-03-13 16:18:49,962 | INFO     | will attempt to kill all subprocesses of pid=6382
[2026-03-13 17:19:42] 2026-03-13 16:18:50,059 | INFO     | process IDs to be killed: [6382] (in reverse order)
[2026-03-13 17:19:42] 2026-03-13 16:18:50,690 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 17:19:42] 2026-03-13 16:18:50,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 17:19:42] 2026-03-13 16:18:50,693 | INFO     | did not find any defunct processes belonging to 6382
[2026-03-13 17:19:42] 2026-03-13 16:18:50,696 | INFO     | did not find any defunct processes belonging to 6382
[2026-03-13 17:19:42] 2026-03-13 16:18:50,696 | INFO     | ready for new job
[2026-03-13 17:19:42] 2026-03-13 16:18:50,696 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 17:19:42] 2026-03-13 16:18:50,699 | INFO     | **************************************
[2026-03-13 17:19:42] 2026-03-13 16:18:50,699 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 17:19:42] 2026-03-13 16:18:50,699 | INFO     | **************************************
[2026-03-13 17:19:42] 2026-03-13 16:18:50,699 | INFO     | 
[2026-03-13 17:19:42] 2026-03-13 16:18:50,699 | INFO     | pilot is running in a VM
[2026-03-13 17:19:42] 2026-03-13 16:18:50,700 | INFO     | architecture information:
[2026-03-13 17:19:42] 2026-03-13 16:18:50,704 | INFO     | executing command: cat /etc/os-release
[2026-03-13 17:19:42] 2026-03-13 16:18:50,782 | INFO     | cat /etc/os-release:
[2026-03-13 17:19:42] NAME="CentOS Linux"
[2026-03-13 17:19:42] VERSION="7 (Core)"
[2026-03-13 17:19:42] ID="centos"
[2026-03-13 17:19:42] ID_LIKE="rhel fedora"
[2026-03-13 17:19:42] VERSION_ID="7"
[2026-03-13 17:19:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 17:19:42] ANSI_COLOR="0;31"
[2026-03-13 17:19:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 17:19:42] HOME_URL="https://www.centos.org/"
[2026-03-13 17:19:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 17:19:42] 
[2026-03-13 17:19:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 17:19:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 17:19:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 17:19:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 17:19:42] 
[2026-03-13 17:19:42] 2026-03-13 16:18:50,782 | INFO     | **************************************
[2026-03-13 17:19:42] 2026-03-13 16:18:51,285 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2026-03-13 17:19:42] 2026-03-13 16:18:51,353 | INFO     | sufficient remaining disk space (494247346176 B)
[2026-03-13 17:19:42] 2026-03-13 16:18:51,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 17:19:42] 2026-03-13 16:18:51,354 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 17:19:42] 2026-03-13 16:18:51,354 | INFO     | update_server=False
[2026-03-13 17:19:42] 2026-03-13 16:18:51,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 17:19:42] 2026-03-13 16:18:51,354 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 17:19:42] 2026-03-13 16:18:51,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 17:19:42] 2026-03-13 16:18:51,365 | INFO     | aborting loop
[2026-03-13 17:19:42] 2026-03-13 16:18:51,375 | INFO     | all job control threads have been joined
[2026-03-13 17:19:42] 2026-03-13 16:18:51,787 | INFO     | all data control threads have been joined
[2026-03-13 17:19:42] 2026-03-13 16:18:52,360 | INFO     | [job] retrieve thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:52,371 | INFO     | [job] job monitor thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:52,381 | INFO     | [job] control thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:52,463 | INFO     | all payload control threads have been joined
[2026-03-13 17:19:42] 2026-03-13 16:18:52,584 | INFO     | [data] copytool_in thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:52,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 17:19:42] 2026-03-13 16:18:52,690 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:52,707 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:52,793 | INFO     | [data] control thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:52,806 | INFO     | [payload] failed_post thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:53,029 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 17:19:42] 2026-03-13 16:18:53,362 | INFO     | [data] copytool_out thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:53,469 | INFO     | [payload] control thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:53,656 | INFO     | [job] validate thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:53,676 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:53,726 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:53,836 | INFO     | [payload] validate_post thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:54,034 | INFO     | [job] queue monitor thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:18:56,605 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 17:19:42] 2026-03-13 16:19:21,187 | INFO     | PID=1924 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-13 17:19:42] 2026-03-13 16:19:21,187 | INFO     | .. there are 2 such processes running
[2026-03-13 17:19:42] 2026-03-13 16:19:21,188 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 17:19:42] 2026-03-13 16:19:21,188 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 17:19:42] 2026-03-13 16:19:21,188 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 17:19:42] 2026-03-13 16:19:29,524 | INFO     | [monitor] cgroup control has ended
[2026-03-13 17:19:42] 2026-03-13 16:19:31,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139766376699712)>', '<ExcThread(monitor, started 139765819111168)>']
[2026-03-13 17:19:42] 2026-03-13 16:19:32,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 17:19:42] 2026-03-13 16:19:32,252 | INFO     | [monitor] control thread has ended
[2026-03-13 17:19:42] 2026-03-13 16:19:36,621 | INFO     | all workflow threads have been joined
[2026-03-13 17:19:42] 2026-03-13 16:19:36,621 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 17:19:42] 2026-03-13 16:19:36,621 | INFO     | traces error code: 0
[2026-03-13 17:19:42] 2026-03-13 16:19:36,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 17:19:42] 2026-03-13 16:19:36,929 [wrapper] ==== pilot stdout END ====
[2026-03-13 17:19:42] 2026-03-13 16:19:37,043 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 17:19:42] 2026-03-13 16:19:37,126 [wrapper] pilotpid: 1924
[2026-03-13 17:19:42] 2026-03-13 16:19:37,221 [wrapper] Pilot exit status: 0
[2026-03-13 17:19:42] 2026-03-13 16:19:37,709 [wrapper] pandaids: 7052335923
[2026-03-13 17:19:42] 2026-03-13 16:19:38,575 [wrapper] cleanup supervisor_pilot 14418 1925
[2026-03-13 17:19:42] 2026-03-13 16:19:38,676 [wrapper] Test setup, not cleaning
[2026-03-13 17:19:42] 2026-03-13 16:19:38,777 [wrapper] apfmon messages muted
[2026-03-13 17:19:42] 2026-03-13 16:19:38,835 [wrapper] ==== wrapper stdout END ====
[2026-03-13 17:19:42] 2026-03-13 16:19:38,945 [wrapper] ==== wrapper stderr END ====
[2026-03-13 17:19:42]  *** Error codes and diagnostics ***
[2026-03-13 17:19:42]     "exeErrorCode": 0,
[2026-03-13 17:19:42]     "exeErrorDiag": "",
[2026-03-13 17:19:42]     "pilotErrorCode": 0,
[2026-03-13 17:19:42]     "pilotErrorDiag": "",
[2026-03-13 17:19:42]  *** Listing of results directory ***
[2026-03-13 17:19:42] total 488608
[2026-03-13 17:19:42] -rwx------. 1 boinc boinc     36322 Mar 12 20:59 runpilot2-wrapper.sh
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc      5111 Mar 12 20:59 queuedata.json
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc    585013 Mar 12 20:59 pilot3.tar.gz
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc       100 Mar 13 11:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 17:19:42] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 11:00 run_atlas
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc       105 Mar 13 11:00 job.xml
[2026-03-13 17:19:42] -rw-r--r--. 2 boinc boinc 263956442 Mar 13 11:00 EVNT.48460594._000002.pool.root.1
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc      6392 Mar 13 11:00 init_data.xml
[2026-03-13 17:19:42] -rw-r--r--. 2 boinc boinc     15845 Mar 13 11:00 start_atlas.sh
[2026-03-13 17:19:42] drwxrwx--x. 2 boinc boinc        68 Mar 13 11:00 shared
[2026-03-13 17:19:42] -rw-r--r--. 2 boinc boinc    597537 Mar 13 11:00 input.tar.gz
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc         0 Mar 13 11:00 boinc_lockfile
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc      2623 Mar 13 11:00 pandaJob.out
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc       415 Mar 13 11:06 workernode_map.json
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc   1006487 Mar 13 11:06 agis_schedconf.cvmfs.json
[2026-03-13 17:19:42] drwx------. 5 boinc boinc      4096 Mar 13 11:06 pilot3
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc 225096988 Mar 13 17:17 HITS.48851653._000077.pool.root.1
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc       531 Mar 13 17:17 boinc_task_state.xml
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc        95 Mar 13 17:18 pilot_heartbeat.json
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc      1012 Mar 13 17:18 memory_monitor_summary.json
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc   1511579 Mar 13 17:18 agis_ddmendpoints.agis.ALL.json
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc    558219 Mar 13 17:18 log.48851653._000077.job.log.tgz.1
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc      6310 Mar 13 17:18 heartbeat.json
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc        28 Mar 13 17:19 wrapper_checkpoint.txt
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc      8192 Mar 13 17:19 boinc_mmap_file
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc      4880 Mar 13 17:19 pilotlog.txt
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc   3117413 Mar 13 17:19 log.48851653._000077.job.log.1
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc       357 Mar 13 17:19 output.list
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc       620 Mar 13 17:19 runtime_log
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc   3696640 Mar 13 17:19 result.tar.gz
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc      8832 Mar 13 17:19 runtime_log.err
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc       656 Mar 13 17:19 FDZMDmCN1K9n9Rq4apOajLDm4fhM0noT9bVooX4SDmU9kLDmF8DaYm.diag
[2026-03-13 17:19:42] -rw-r--r--. 1 boinc boinc     20738 Mar 13 17:19 stderr.txt
[2026-03-13 17:19:42] HITS file was successfully produced:
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc 225096988 Mar 13 17:17 shared/HITS.pool.root.1
[2026-03-13 17:19:42]  *** Contents of shared directory: ***
[2026-03-13 17:19:42] total 481808
[2026-03-13 17:19:42] -rw-r--r--. 2 boinc boinc 263956442 Mar 13 11:00 ATLAS.root_0
[2026-03-13 17:19:42] -rw-r--r--. 2 boinc boinc     15845 Mar 13 11:00 start_atlas.sh
[2026-03-13 17:19:42] -rw-r--r--. 2 boinc boinc    597537 Mar 13 11:00 input.tar.gz
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc 225096988 Mar 13 17:17 HITS.pool.root.1
[2026-03-13 17:19:42] -rw-------. 1 boinc boinc   3696640 Mar 13 17:19 result.tar.gz
17:19:44 (30321): run_atlas exited; CPU time 81977.725930
17:19:44 (30321): called boinc_finish(0)

</stderr_txt>
]]>

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