Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:10:25 (706): wrapper (7.7.26015): starting
11:10:25 (706): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 11:10:25] Arguments: --nthreads 8
[2026-03-13 11:10:25] Threads: 8
[2026-03-13 11:10:25] Checking for CVMFS
[2026-03-13 11:10:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 11:10:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 11:10:28] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 11:10:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 11:10:29] 2.11.2.0 10131 125998 136872 157234 2 54 22128006 25165825 4834 130560 152 38109123 99.809 27648985 1004 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 11:10:29] CVMFS is ok
[2026-03-13 11:10:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 11:10:29] Checking for apptainer binary...
[2026-03-13 11:10:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 11:10:29] Running /usr/bin/apptainer --version
[2026-03-13 11:10:29] apptainer version 1.3.2-1.el7
[2026-03-13 11:10:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 11:10:52] cg-vwn460.simple-grid.lan
[2026-03-13 11:10:52] apptainer works
[2026-03-13 11:10:52] Set ATHENA_PROC_NUMBER=8
[2026-03-13 11:10:52] Set ATHENA_CORE_NUMBER=8
[2026-03-13 11:10:52] Starting ATLAS job with PandaID=7043489292
[2026-03-13 11:10:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 14:54:36]  *** The last 200 lines of the pilot log: ***
[2026-03-13 14:54:36] 2026-03-13 13:53:44,117 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7043489292/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,118 | INFO     | extracted standard info from prmon json
[2026-03-13 14:54:36] 2026-03-13 13:53:44,118 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 14:54:36] 2026-03-13 13:53:44,118 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 14:54:36] 2026-03-13 13:53:44,118 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 14:54:36] 2026-03-13 13:53:44,118 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 14:54:36] 2026-03-13 13:53:44,122 | INFO     | fitting pss+swap vs Time
[2026-03-13 14:54:36] 2026-03-13 13:53:44,122 | INFO     | sum of square deviations: 2871616632.5
[2026-03-13 14:54:36] 2026-03-13 13:53:44,124 | INFO     | sum of deviations: 54758667575.0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,124 | INFO     | mean x: 1773403589.5
[2026-03-13 14:54:36] 2026-03-13 13:53:44,124 | INFO     | mean y: 2447126.0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,124 | INFO     | intersect: -33814468591.33235
[2026-03-13 14:54:36] 2026-03-13 13:53:44,125 | INFO     | chi2: 7.331758977045172
[2026-03-13 14:54:36] 2026-03-13 13:53:44,125 | INFO     | sum of square deviations: 2671343110.0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,127 | INFO     | sum of deviations: 67522433478.99999
[2026-03-13 14:54:36] 2026-03-13 13:53:44,127 | INFO     | mean x: 1773403437.0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,127 | INFO     | mean y: 2456641.2097560978
[2026-03-13 14:54:36] 2026-03-13 13:53:44,127 | INFO     | intersect: -44823127596.92372
[2026-03-13 14:54:36] 2026-03-13 13:53:44,127 | INFO     | chi2: 6.63472577455685
[2026-03-13 14:54:36] 2026-03-13 13:53:44,128 | INFO     | current chi2=6.63472577455685 (change=9.507039233977086 %)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,128 | INFO     | right removable region: 204
[2026-03-13 14:54:36] 2026-03-13 13:53:44,128 | INFO     | sum of square deviations: 2671343110.0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,130 | INFO     | sum of deviations: -16339058009.999996
[2026-03-13 14:54:36] 2026-03-13 13:53:44,130 | INFO     | mean x: 1773403742.0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,130 | INFO     | mean y: 2501213.673170732
[2026-03-13 14:54:36] 2026-03-13 13:53:44,130 | INFO     | intersect: 10849384381.627235
[2026-03-13 14:54:36] 2026-03-13 13:53:44,130 | INFO     | chi2: 2.6029322980144345
[2026-03-13 14:54:36] 2026-03-13 13:53:44,135 | INFO     | current chi2=2.6029322980144345 (change=64.49784688553058 %)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,135 | INFO     | sum of square deviations: 2480604650.0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,136 | INFO     | sum of deviations: -53954011664.499985
[2026-03-13 14:54:36] 2026-03-13 13:53:44,137 | INFO     | mean x: 1773403894.5
[2026-03-13 14:54:36] 2026-03-13 13:53:44,137 | INFO     | mean y: 2531083.675
[2026-03-13 14:54:36] 2026-03-13 13:53:44,137 | INFO     | intersect: 38574680986.61205
[2026-03-13 14:54:36] 2026-03-13 13:53:44,137 | INFO     | chi2: 1.0089479090106837
[2026-03-13 14:54:36] 2026-03-13 13:53:44,137 | INFO     | current chi2=1.0089479090106837 (change=61.23802721337286 %)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,138 | INFO     | sum of square deviations: 2299168690.0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,139 | INFO     | sum of deviations: -55973703700.00001
[2026-03-13 14:54:36] 2026-03-13 13:53:44,139 | INFO     | mean x: 1773404047.0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,139 | INFO     | mean y: 2532748.38974359
[2026-03-13 14:54:36] 2026-03-13 13:53:44,139 | INFO     | intersect: 43176395153.04822
[2026-03-13 14:54:36] 2026-03-13 13:53:44,140 | INFO     | chi2: 0.9756451887568172
[2026-03-13 14:54:36] 2026-03-13 13:53:44,140 | INFO     | current chi2=0.9756451887568172 (change=3.3007373281065844 %)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,140 | INFO     | left removable region: 30
[2026-03-13 14:54:36] 2026-03-13 13:53:44,140 | INFO     | sum of square deviations: 1633472487.5
[2026-03-13 14:54:36] 2026-03-13 13:53:44,141 | INFO     | sum of deviations: -23545246833.0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,142 | INFO     | mean x: 1773404321.5
[2026-03-13 14:54:36] 2026-03-13 13:53:44,142 | INFO     | mean y: 2527752.574712644
[2026-03-13 14:54:36] 2026-03-13 13:53:44,142 | INFO     | intersect: 25564784113.765114
[2026-03-13 14:54:36] 2026-03-13 13:53:44,142 | INFO     | chi2: 0.1491517716757882
[2026-03-13 14:54:36] 2026-03-13 13:53:44,142 | INFO     | current memory leak: -14.41 B/s (using 174 data points, chi2=0.15)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,143 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,143 | INFO     | ..............................
[2026-03-13 14:54:36] 2026-03-13 13:53:44,143 | INFO     | . Timing measurements:
[2026-03-13 14:54:36] 2026-03-13 13:53:44,143 | INFO     | . get job = 0 s
[2026-03-13 14:54:36] 2026-03-13 13:53:44,143 | INFO     | . initial setup = 102 s
[2026-03-13 14:54:36] 2026-03-13 13:53:44,143 | INFO     | . payload setup = 132 s
[2026-03-13 14:54:36] 2026-03-13 13:53:44,144 | INFO     | . stage-in = 0 s
[2026-03-13 14:54:36] 2026-03-13 13:53:44,144 | INFO     | . payload execution = 12905 s
[2026-03-13 14:54:36] 2026-03-13 13:53:44,144 | INFO     | . stage-out = 3 s
[2026-03-13 14:54:36] 2026-03-13 13:53:44,144 | INFO     | . log creation = 1 s
[2026-03-13 14:54:36] 2026-03-13 13:53:44,144 | INFO     | ..............................
[2026-03-13 14:54:36] 2026-03-13 13:53:44,257 | INFO     | 
[2026-03-13 14:54:36] 2026-03-13 13:53:44,257 | INFO     | job summary report
[2026-03-13 14:54:36] 2026-03-13 13:53:44,257 | INFO     | --------------------------------------------------
[2026-03-13 14:54:36] 2026-03-13 13:53:44,258 | INFO     | PanDA job id: 7043489292
[2026-03-13 14:54:36] 2026-03-13 13:53:44,258 | INFO     | task id: 48955006
[2026-03-13 14:54:36] 2026-03-13 13:53:44,258 | INFO     | errors: (none)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,258 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 14:54:36] 2026-03-13 13:53:44,258 | INFO     | pilot state: finished 
[2026-03-13 14:54:36] 2026-03-13 13:53:44,258 | INFO     | transexitcode: 0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,258 | INFO     | exeerrorcode: 0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,258 | INFO     | exeerrordiag: 
[2026-03-13 14:54:36] 2026-03-13 13:53:44,258 | INFO     | exitcode: 0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,258 | INFO     | exitmsg: OK
[2026-03-13 14:54:36] 2026-03-13 13:53:44,259 | INFO     | cpuconsumptiontime: 49217 s
[2026-03-13 14:54:36] 2026-03-13 13:53:44,259 | INFO     | nevents: 400
[2026-03-13 14:54:36] 2026-03-13 13:53:44,259 | INFO     | neventsw: 0
[2026-03-13 14:54:36] 2026-03-13 13:53:44,259 | INFO     | pid: 9295
[2026-03-13 14:54:36] 2026-03-13 13:53:44,259 | INFO     | pgrp: 9295
[2026-03-13 14:54:36] 2026-03-13 13:53:44,259 | INFO     | corecount: 8
[2026-03-13 14:54:36] 2026-03-13 13:53:44,259 | INFO     | event service: False
[2026-03-13 14:54:36] 2026-03-13 13:53:44,259 | INFO     | sizes: {0: 2279142, 1: 2279827, 2: 2280288, 13: 2280288, 13041: 2310433, 13046: 2319431, 13047: 2319615, 13048: 2319809}
[2026-03-13 14:54:36] 2026-03-13 13:53:44,259 | INFO     | --------------------------------------------------
[2026-03-13 14:54:36] 2026-03-13 13:53:44,259 | INFO     | 
[2026-03-13 14:54:36] 2026-03-13 13:53:44,260 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-13 14:54:36] 2026-03-13 13:53:44,614 | INFO     | time since job start (13061s) is within the limit (345600.0s)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,811 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,811 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,811 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,811 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,812 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,812 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,812 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,812 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,812 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,812 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,812 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,812 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,813 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,813 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,813 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,813 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,813 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,813 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,813 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,813 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 14:54:36] 2026-03-13 13:53:44,813 | INFO     | job 7043489292 has completed (purged errors)
[2026-03-13 14:54:36] 2026-03-13 13:53:44,814 | INFO     | overall cleanup function is called
[2026-03-13 14:54:36] 2026-03-13 13:53:45,823 | INFO     | --- collectZombieJob: --- 10, [9295]
[2026-03-13 14:54:36] 2026-03-13 13:53:45,823 | INFO     | zombie collector waiting for pid 9295
[2026-03-13 14:54:36] 2026-03-13 13:53:45,823 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 14:54:36] 2026-03-13 13:53:45,823 | INFO     | collected zombie processes
[2026-03-13 14:54:36] 2026-03-13 13:53:45,823 | INFO     | will attempt to kill all subprocesses of pid=9295
[2026-03-13 14:54:36] 2026-03-13 13:53:45,942 | INFO     | process IDs to be killed: [9295] (in reverse order)
[2026-03-13 14:54:36] 2026-03-13 13:53:46,738 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 14:54:36] 2026-03-13 13:53:46,739 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 14:54:36] 2026-03-13 13:53:46,742 | INFO     | did not find any defunct processes belonging to 9295
[2026-03-13 14:54:36] 2026-03-13 13:53:46,744 | INFO     | did not find any defunct processes belonging to 9295
[2026-03-13 14:54:36] 2026-03-13 13:53:46,745 | INFO     | ready for new job
[2026-03-13 14:54:36] 2026-03-13 13:53:46,745 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 14:54:36] 2026-03-13 13:53:46,747 | INFO     | **************************************
[2026-03-13 14:54:36] 2026-03-13 13:53:46,747 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 14:54:36] 2026-03-13 13:53:46,747 | INFO     | **************************************
[2026-03-13 14:54:36] 2026-03-13 13:53:46,747 | INFO     | 
[2026-03-13 14:54:36] 2026-03-13 13:53:46,748 | INFO     | pilot is running in a VM
[2026-03-13 14:54:36] 2026-03-13 13:53:46,748 | INFO     | architecture information:
[2026-03-13 14:54:36] 2026-03-13 13:53:46,754 | INFO     | executing command: cat /etc/os-release
[2026-03-13 14:54:36] 2026-03-13 13:53:46,931 | INFO     | cat /etc/os-release:
[2026-03-13 14:54:36] NAME="CentOS Linux"
[2026-03-13 14:54:36] VERSION="7 (Core)"
[2026-03-13 14:54:36] ID="centos"
[2026-03-13 14:54:36] ID_LIKE="rhel fedora"
[2026-03-13 14:54:36] VERSION_ID="7"
[2026-03-13 14:54:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 14:54:36] ANSI_COLOR="0;31"
[2026-03-13 14:54:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 14:54:36] HOME_URL="https://www.centos.org/"
[2026-03-13 14:54:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 14:54:36] 
[2026-03-13 14:54:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 14:54:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 14:54:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 14:54:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 14:54:36] 
[2026-03-13 14:54:36] 2026-03-13 13:53:46,932 | INFO     | **************************************
[2026-03-13 14:54:36] 2026-03-13 13:53:47,435 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-13 14:54:36] 2026-03-13 13:53:47,545 | INFO     | sufficient remaining disk space (495416508416 B)
[2026-03-13 14:54:36] 2026-03-13 13:53:47,545 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 14:54:36] 2026-03-13 13:53:47,546 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 14:54:36] 2026-03-13 13:53:47,546 | INFO     | update_server=False
[2026-03-13 14:54:36] 2026-03-13 13:53:47,546 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 14:54:36] 2026-03-13 13:53:47,945 | INFO     | all data control threads have been joined
[2026-03-13 14:54:36] 2026-03-13 13:53:47,973 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-13 14:54:36] 2026-03-13 13:53:47,974 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-13 14:54:36] 2026-03-13 13:53:47,974 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 14:54:36] 2026-03-13 13:53:47,974 | INFO     | will abort loop
[2026-03-13 14:54:36] 2026-03-13 13:53:48,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 14:54:36] 2026-03-13 13:53:48,145 | INFO     | all job control threads have been joined
[2026-03-13 14:54:36] 2026-03-13 13:53:48,552 | INFO     | [job] retrieve thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:48,599 | INFO     | [payload] validate_post thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:48,615 | INFO     | all payload control threads have been joined
[2026-03-13 14:54:36] 2026-03-13 13:53:48,951 | INFO     | [data] control thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:48,980 | INFO     | [job] job monitor thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:49,152 | INFO     | [job] control thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:49,172 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:49,273 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 14:54:36] 2026-03-13 13:53:49,394 | INFO     | [job] validate thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:49,394 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:49,485 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:49,512 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 14:54:36] 2026-03-13 13:53:49,554 | INFO     | [data] copytool_in thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:49,579 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:49,621 | INFO     | [payload] control thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:49,695 | INFO     | [payload] failed_post thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:50,103 | INFO     | [data] copytool_out thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:50,279 | INFO     | [job] queue monitor thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:53:53,520 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 14:54:36] 2026-03-13 13:54:17,810 | INFO     | PID=4833 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-13 14:54:36] 2026-03-13 13:54:17,810 | INFO     | .. there are 9 such processes running
[2026-03-13 14:54:36] 2026-03-13 13:54:17,811 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 14:54:36] 2026-03-13 13:54:17,811 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 14:54:36] 2026-03-13 13:54:17,811 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 14:54:36] 2026-03-13 13:54:25,578 | INFO     | [monitor] cgroup control has ended
[2026-03-13 14:54:36] 2026-03-13 13:54:27,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140667481818944)>', '<ExcThread(monitor, started 140667175016192)>']
[2026-03-13 14:54:36] 2026-03-13 13:54:27,870 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 14:54:36] 2026-03-13 13:54:27,871 | INFO     | [monitor] control thread has ended
[2026-03-13 14:54:36] 2026-03-13 13:54:32,168 | INFO     | all workflow threads have been joined
[2026-03-13 14:54:36] 2026-03-13 13:54:32,168 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 14:54:36] 2026-03-13 13:54:32,168 | INFO     | traces error code: 0
[2026-03-13 14:54:36] 2026-03-13 13:54:32,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 14:54:36] 2026-03-13 13:54:32,526 [wrapper] ==== pilot stdout END ====
[2026-03-13 14:54:36] 2026-03-13 13:54:32,623 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 14:54:36] 2026-03-13 13:54:32,703 [wrapper] pilotpid: 4833
[2026-03-13 14:54:36] 2026-03-13 13:54:32,764 [wrapper] Pilot exit status: 0
[2026-03-13 14:54:36] 2026-03-13 13:54:33,178 [wrapper] pandaids: 7043489292
[2026-03-13 14:54:36] 2026-03-13 13:54:33,957 [wrapper] cleanup supervisor_pilot 17100 4834
[2026-03-13 14:54:36] 2026-03-13 13:54:34,055 [wrapper] Test setup, not cleaning
[2026-03-13 14:54:36] 2026-03-13 13:54:34,169 [wrapper] apfmon messages muted
[2026-03-13 14:54:36] 2026-03-13 13:54:34,254 [wrapper] ==== wrapper stdout END ====
[2026-03-13 14:54:36] 2026-03-13 13:54:34,344 [wrapper] ==== wrapper stderr END ====
[2026-03-13 14:54:36]  *** Error codes and diagnostics ***
[2026-03-13 14:54:36]     "exeErrorCode": 0,
[2026-03-13 14:54:36]     "exeErrorDiag": "",
[2026-03-13 14:54:36]     "pilotErrorCode": 0,
[2026-03-13 14:54:36]     "pilotErrorDiag": "",
[2026-03-13 14:54:36]  *** Listing of results directory ***
[2026-03-13 14:54:36] total 613436
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc      5111 Mar 12 20:23 queuedata.json
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc    585013 Mar 12 20:23 pilot3.tar.gz
[2026-03-13 14:54:36] -rwx------. 1 boinc boinc     36322 Mar 12 20:24 runpilot2-wrapper.sh
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc       100 Mar 13 11:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 14:54:36] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 11:10 run_atlas
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc       105 Mar 13 11:10 job.xml
[2026-03-13 14:54:36] -rw-r--r--. 2 boinc boinc 435547286 Mar 13 11:10 EVNT.46701403._000932.pool.root.1
[2026-03-13 14:54:36] -rw-r--r--. 2 boinc boinc     15845 Mar 13 11:10 start_atlas.sh
[2026-03-13 14:54:36] drwxrwx--x. 2 boinc boinc        68 Mar 13 11:10 shared
[2026-03-13 14:54:36] -rw-r--r--. 2 boinc boinc    597530 Mar 13 11:10 input.tar.gz
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc      6391 Mar 13 11:10 init_data.xml
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc         0 Mar 13 11:10 boinc_lockfile
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc      2565 Mar 13 11:10 pandaJob.out
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc       413 Mar 13 11:15 workernode_map.json
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc   1006487 Mar 13 11:16 agis_schedconf.cvmfs.json
[2026-03-13 14:54:36] drwx------. 5 boinc boinc      4096 Mar 13 11:16 pilot3
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc 184096227 Mar 13 14:52 HITS.48955006._047093.pool.root.1
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc       531 Mar 13 14:52 boinc_task_state.xml
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc      1013 Mar 13 14:53 memory_monitor_summary.json
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc   1511578 Mar 13 14:53 agis_ddmendpoints.agis.ALL.json
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc    469787 Mar 13 14:53 log.48955006._047093.job.log.tgz.1
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc      6326 Mar 13 14:53 heartbeat.json
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc      8192 Mar 13 14:54 boinc_mmap_file
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc        28 Mar 13 14:54 wrapper_checkpoint.txt
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc        95 Mar 13 14:54 pilot_heartbeat.json
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc      5065 Mar 13 14:54 pilotlog.txt
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc   1828583 Mar 13 14:54 log.48955006._047093.job.log.1
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc       357 Mar 13 14:54 output.list
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc       620 Mar 13 14:54 runtime_log
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc   2314240 Mar 13 14:54 result.tar.gz
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc      8816 Mar 13 14:54 runtime_log.err
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc       656 Mar 13 14:54 k7uMDmto0K9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmOYnLDmvD16Do.diag
[2026-03-13 14:54:36] -rw-r--r--. 1 boinc boinc     20711 Mar 13 14:54 stderr.txt
[2026-03-13 14:54:36] HITS file was successfully produced:
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc 184096227 Mar 13 14:52 shared/HITS.pool.root.1
[2026-03-13 14:54:36]  *** Contents of shared directory: ***
[2026-03-13 14:54:36] total 607984
[2026-03-13 14:54:36] -rw-r--r--. 2 boinc boinc 435547286 Mar 13 11:10 ATLAS.root_0
[2026-03-13 14:54:36] -rw-r--r--. 2 boinc boinc     15845 Mar 13 11:10 start_atlas.sh
[2026-03-13 14:54:36] -rw-r--r--. 2 boinc boinc    597530 Mar 13 11:10 input.tar.gz
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc 184096227 Mar 13 14:52 HITS.pool.root.1
[2026-03-13 14:54:36] -rw-------. 1 boinc boinc   2314240 Mar 13 14:54 result.tar.gz
14:54:38 (706): run_atlas exited; CPU time 49412.336971
14:54:38 (706): called boinc_finish(0)

</stderr_txt>
]]>

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