Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:02:58 (29213): wrapper (7.7.26015): starting
14:02:58 (29213): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 14:02:58] Arguments: --nthreads 8
[2026-03-13 14:02:58] Threads: 8
[2026-03-13 14:02:58] Checking for CVMFS
[2026-03-13 14:02:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 14:03:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 14:03:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 14:03:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 14:03:02] 2.11.2.0 5634 126147 135600 157240 2 53 21270464 25165824 4784 130560 152 35483459 99.810 29821664 1022 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 14:03:02] CVMFS is ok
[2026-03-13 14:03:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 14:03:02] Checking for apptainer binary...
[2026-03-13 14:03:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 14:03:02] Running /usr/bin/apptainer --version
[2026-03-13 14:03:02] apptainer version 1.3.2-1.el7
[2026-03-13 14:03:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 14:03:25] cg-vwn416.simple-grid.lan
[2026-03-13 14:03:25] apptainer works
[2026-03-13 14:03:25] Set ATHENA_PROC_NUMBER=8
[2026-03-13 14:03:25] Set ATHENA_CORE_NUMBER=8
[2026-03-13 14:03:25] Starting ATLAS job with PandaID=7043636208
[2026-03-13 14:03:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 17:56:36]  *** The last 200 lines of the pilot log: ***
[2026-03-13 17:56:36] 2026-03-13 16:55:43,111 | INFO     | job 7043636208 has finished - writing final server update
[2026-03-13 17:56:36] 2026-03-13 16:55:43,111 | INFO     | total number of processed events: 400 (read)
[2026-03-13 17:56:36] 2026-03-13 16:55:43,113 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7043636208/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 17:56:36] 2026-03-13 16:55:43,114 | INFO     | extracted standard info from prmon json
[2026-03-13 17:56:36] 2026-03-13 16:55:43,114 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 17:56:36] 2026-03-13 16:55:43,114 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 17:56:36] 2026-03-13 16:55:43,114 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 17:56:36] 2026-03-13 16:55:43,115 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 17:56:36] 2026-03-13 16:55:43,119 | INFO     | fitting pss+swap vs Time
[2026-03-13 17:56:36] 2026-03-13 16:55:43,120 | INFO     | sum of square deviations: 3256879670.0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,121 | INFO     | sum of deviations: 17825399321.000004
[2026-03-13 17:56:36] 2026-03-13 16:55:43,122 | INFO     | mean x: 1773414244.0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,122 | INFO     | mean y: 2481785.305936073
[2026-03-13 17:56:36] 2026-03-13 16:55:43,122 | INFO     | intersect: -9703684933.72711
[2026-03-13 17:56:36] 2026-03-13 16:55:43,122 | INFO     | chi2: 5.972433981603087
[2026-03-13 17:56:36] 2026-03-13 16:55:43,123 | INFO     | sum of square deviations: 3038856977.5
[2026-03-13 17:56:36] 2026-03-13 16:55:43,124 | INFO     | sum of deviations: 32176727160.500004
[2026-03-13 17:56:36] 2026-03-13 16:55:43,125 | INFO     | mean x: 1773414091.5
[2026-03-13 17:56:36] 2026-03-13 16:55:43,125 | INFO     | mean y: 2491636.303738318
[2026-03-13 17:56:36] 2026-03-13 16:55:43,125 | INFO     | intersect: -18775180951.54068
[2026-03-13 17:56:36] 2026-03-13 16:55:43,125 | INFO     | chi2: 5.2543059689481435
[2026-03-13 17:56:36] 2026-03-13 16:55:43,125 | INFO     | current chi2=5.2543059689481435 (change=12.024042707998053 %)
[2026-03-13 17:56:36] 2026-03-13 16:55:43,125 | INFO     | right removable region: 213
[2026-03-13 17:56:36] 2026-03-13 16:55:43,126 | INFO     | sum of square deviations: 3038856977.5
[2026-03-13 17:56:36] 2026-03-13 16:55:43,131 | INFO     | sum of deviations: -54988669142.5
[2026-03-13 17:56:36] 2026-03-13 16:55:43,131 | INFO     | mean x: 1773414396.5
[2026-03-13 17:56:36] 2026-03-13 16:55:43,131 | INFO     | mean y: 2532650.462616822
[2026-03-13 17:56:36] 2026-03-13 16:55:43,131 | INFO     | intersect: 32092788369.542377
[2026-03-13 17:56:36] 2026-03-13 16:55:43,132 | INFO     | chi2: 1.6522022961779779
[2026-03-13 17:56:36] 2026-03-13 16:55:43,132 | INFO     | current chi2=1.6522022961779779 (change=72.33619825238314 %)
[2026-03-13 17:56:36] 2026-03-13 16:55:43,132 | INFO     | sum of square deviations: 2830787960.0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,134 | INFO     | sum of deviations: -76444896708.0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,135 | INFO     | mean x: 1773414549.0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,135 | INFO     | mean y: 2548226.7033492825
[2026-03-13 17:56:36] 2026-03-13 16:55:43,135 | INFO     | intersect: 47893274743.27699
[2026-03-13 17:56:36] 2026-03-13 16:55:43,135 | INFO     | chi2: 1.0205854372101009
[2026-03-13 17:56:36] 2026-03-13 16:55:43,135 | INFO     | current chi2=1.0205854372101009 (change=38.2287847213982 %)
[2026-03-13 17:56:36] 2026-03-13 16:55:43,136 | INFO     | sum of square deviations: 2632440055.0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,137 | INFO     | sum of deviations: -73361611630.99998
[2026-03-13 17:56:36] 2026-03-13 16:55:43,138 | INFO     | mean x: 1773414701.5
[2026-03-13 17:56:36] 2026-03-13 16:55:43,138 | INFO     | mean y: 2545826.3529411764
[2026-03-13 17:56:36] 2026-03-13 16:55:43,138 | INFO     | intersect: 49424586926.600815
[2026-03-13 17:56:36] 2026-03-13 16:55:43,139 | INFO     | chi2: 1.010257021279492
[2026-03-13 17:56:36] 2026-03-13 16:55:43,139 | INFO     | current chi2=1.010257021279492 (change=1.0120089464379374 %)
[2026-03-13 17:56:36] 2026-03-13 16:55:43,140 | INFO     | left removable region: 30
[2026-03-13 17:56:36] 2026-03-13 16:55:43,140 | INFO     | sum of square deviations: 1900284932.0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,141 | INFO     | sum of deviations: -39714821833.0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,141 | INFO     | mean x: 1773414976.0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,142 | INFO     | mean y: 2542004.863387978
[2026-03-13 17:56:36] 2026-03-13 16:55:43,142 | INFO     | intersect: 37065857417.08809
[2026-03-13 17:56:36] 2026-03-13 16:55:43,142 | INFO     | chi2: 0.1994788876202664
[2026-03-13 17:56:36] 2026-03-13 16:55:43,143 | INFO     | current memory leak: -20.90 B/s (using 183 data points, chi2=0.20)
[2026-03-13 17:56:36] 2026-03-13 16:55:43,144 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-03-13 17:56:36] 2026-03-13 16:55:43,144 | INFO     | ..............................
[2026-03-13 17:56:36] 2026-03-13 16:55:43,144 | INFO     | . Timing measurements:
[2026-03-13 17:56:36] 2026-03-13 16:55:43,144 | INFO     | . get job = 0 s
[2026-03-13 17:56:36] 2026-03-13 16:55:43,144 | INFO     | . initial setup = 103 s
[2026-03-13 17:56:36] 2026-03-13 16:55:43,144 | INFO     | . payload setup = 127 s
[2026-03-13 17:56:36] 2026-03-13 16:55:43,144 | INFO     | . stage-in = 0 s
[2026-03-13 17:56:36] 2026-03-13 16:55:43,144 | INFO     | . payload execution = 13447 s
[2026-03-13 17:56:36] 2026-03-13 16:55:43,145 | INFO     | . stage-out = 3 s
[2026-03-13 17:56:36] 2026-03-13 16:55:43,145 | INFO     | . log creation = 1 s
[2026-03-13 17:56:36] 2026-03-13 16:55:43,145 | INFO     | ..............................
[2026-03-13 17:56:36] 2026-03-13 16:55:43,213 | INFO     | time since job start (13600s) is within the limit (345600.0s)
[2026-03-13 17:56:36] 2026-03-13 16:55:43,372 | INFO     | 
[2026-03-13 17:56:36] 2026-03-13 16:55:43,372 | INFO     | job summary report
[2026-03-13 17:56:36] 2026-03-13 16:55:43,373 | INFO     | --------------------------------------------------
[2026-03-13 17:56:36] 2026-03-13 16:55:43,373 | INFO     | PanDA job id: 7043636208
[2026-03-13 17:56:36] 2026-03-13 16:55:43,373 | INFO     | task id: 48955010
[2026-03-13 17:56:36] 2026-03-13 16:55:43,373 | INFO     | errors: (none)
[2026-03-13 17:56:36] 2026-03-13 16:55:43,373 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 17:56:36] 2026-03-13 16:55:43,373 | INFO     | pilot state: finished 
[2026-03-13 17:56:36] 2026-03-13 16:55:43,373 | INFO     | transexitcode: 0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,373 | INFO     | exeerrorcode: 0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,373 | INFO     | exeerrordiag: 
[2026-03-13 17:56:36] 2026-03-13 16:55:43,373 | INFO     | exitcode: 0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,374 | INFO     | exitmsg: OK
[2026-03-13 17:56:36] 2026-03-13 16:55:43,374 | INFO     | cpuconsumptiontime: 51696 s
[2026-03-13 17:56:36] 2026-03-13 16:55:43,374 | INFO     | nevents: 400
[2026-03-13 17:56:36] 2026-03-13 16:55:43,374 | INFO     | neventsw: 0
[2026-03-13 17:56:36] 2026-03-13 16:55:43,374 | INFO     | pid: 5496
[2026-03-13 17:56:36] 2026-03-13 16:55:43,374 | INFO     | pgrp: 5496
[2026-03-13 17:56:36] 2026-03-13 16:55:43,374 | INFO     | corecount: 8
[2026-03-13 17:56:36] 2026-03-13 16:55:43,374 | INFO     | event service: False
[2026-03-13 17:56:36] 2026-03-13 16:55:43,374 | INFO     | sizes: {0: 2279089, 1: 2279774, 2: 2280235, 13: 2280235, 13579: 2310519, 13584: 2319517, 13585: 2319701, 13587: 2319895}
[2026-03-13 17:56:36] 2026-03-13 16:55:43,375 | INFO     | --------------------------------------------------
[2026-03-13 17:56:36] 2026-03-13 16:55:43,375 | INFO     | 
[2026-03-13 17:56:36] 2026-03-13 16:55:43,375 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-03-13 17:56:36] 2026-03-13 16:55:44,088 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,088 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,088 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,088 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,089 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,089 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,089 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,089 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,089 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,089 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,089 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,089 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,089 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,090 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 17:56:36] 2026-03-13 16:55:44,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,090 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 17:56:36] 2026-03-13 16:55:44,090 | INFO     | job 7043636208 has completed (purged errors)
[2026-03-13 17:56:36] 2026-03-13 16:55:44,090 | INFO     | overall cleanup function is called
[2026-03-13 17:56:36] 2026-03-13 16:55:45,099 | INFO     | --- collectZombieJob: --- 10, [5496]
[2026-03-13 17:56:36] 2026-03-13 16:55:45,099 | INFO     | zombie collector waiting for pid 5496
[2026-03-13 17:56:36] 2026-03-13 16:55:45,100 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 17:56:36] 2026-03-13 16:55:45,100 | INFO     | collected zombie processes
[2026-03-13 17:56:36] 2026-03-13 16:55:45,100 | INFO     | will attempt to kill all subprocesses of pid=5496
[2026-03-13 17:56:36] 2026-03-13 16:55:45,219 | INFO     | process IDs to be killed: [5496] (in reverse order)
[2026-03-13 17:56:36] 2026-03-13 16:55:46,157 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 17:56:36] 2026-03-13 16:55:46,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 17:56:36] 2026-03-13 16:55:46,160 | INFO     | did not find any defunct processes belonging to 5496
[2026-03-13 17:56:36] 2026-03-13 16:55:46,163 | INFO     | did not find any defunct processes belonging to 5496
[2026-03-13 17:56:36] 2026-03-13 16:55:46,163 | INFO     | ready for new job
[2026-03-13 17:56:36] 2026-03-13 16:55:46,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 17:56:36] 2026-03-13 16:55:46,166 | INFO     | **************************************
[2026-03-13 17:56:36] 2026-03-13 16:55:46,166 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 17:56:36] 2026-03-13 16:55:46,166 | INFO     | **************************************
[2026-03-13 17:56:36] 2026-03-13 16:55:46,166 | INFO     | 
[2026-03-13 17:56:36] 2026-03-13 16:55:46,167 | INFO     | pilot is running in a VM
[2026-03-13 17:56:36] 2026-03-13 16:55:46,167 | INFO     | architecture information:
[2026-03-13 17:56:36] 2026-03-13 16:55:46,176 | INFO     | executing command: cat /etc/os-release
[2026-03-13 17:56:36] 2026-03-13 16:55:46,428 | INFO     | cat /etc/os-release:
[2026-03-13 17:56:36] NAME="CentOS Linux"
[2026-03-13 17:56:36] VERSION="7 (Core)"
[2026-03-13 17:56:36] ID="centos"
[2026-03-13 17:56:36] ID_LIKE="rhel fedora"
[2026-03-13 17:56:36] VERSION_ID="7"
[2026-03-13 17:56:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 17:56:36] ANSI_COLOR="0;31"
[2026-03-13 17:56:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 17:56:36] HOME_URL="https://www.centos.org/"
[2026-03-13 17:56:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 17:56:36] 
[2026-03-13 17:56:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 17:56:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 17:56:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 17:56:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 17:56:36] 
[2026-03-13 17:56:36] 2026-03-13 16:55:46,429 | INFO     | **************************************
[2026-03-13 17:56:36] 2026-03-13 16:55:46,932 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-03-13 17:56:36] 2026-03-13 16:55:47,164 | INFO     | sufficient remaining disk space (495812870144 B)
[2026-03-13 17:56:36] 2026-03-13 16:55:47,164 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 17:56:36] 2026-03-13 16:55:47,165 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 17:56:36] 2026-03-13 16:55:47,165 | INFO     | update_server=False
[2026-03-13 17:56:36] 2026-03-13 16:55:47,165 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 17:56:36] 2026-03-13 16:55:47,165 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 17:56:36] 2026-03-13 16:55:47,165 | INFO     | aborting loop
[2026-03-13 17:56:36] 2026-03-13 16:55:47,168 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 17:56:36] 2026-03-13 16:55:47,664 | INFO     | all data control threads have been joined
[2026-03-13 17:56:36] 2026-03-13 16:55:47,706 | INFO     | all job control threads have been joined
[2026-03-13 17:56:36] 2026-03-13 16:55:48,171 | INFO     | [job] retrieve thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:48,172 | INFO     | [job] job monitor thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:48,181 | INFO     | [data] copytool_in thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:48,252 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:48,268 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:48,351 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 17:56:36] 2026-03-13 16:55:48,359 | INFO     | all payload control threads have been joined
[2026-03-13 17:56:36] 2026-03-13 16:55:48,546 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:48,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 17:56:36] 2026-03-13 16:55:48,670 | INFO     | [data] control thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:48,712 | INFO     | [job] control thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:48,993 | INFO     | [payload] failed_post thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:49,249 | INFO     | [payload] validate_post thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:49,357 | INFO     | [job] queue monitor thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:49,365 | INFO     | [payload] control thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:49,484 | INFO     | [job] validate thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:49,485 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:50,673 | INFO     | [data] copytool_out thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:55:51,176 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 17:56:36] 2026-03-13 16:56:16,368 | INFO     | PID=917 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-03-13 17:56:36] 2026-03-13 16:56:16,368 | INFO     | .. there are 9 such processes running
[2026-03-13 17:56:36] 2026-03-13 16:56:16,368 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 17:56:36] 2026-03-13 16:56:16,369 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 17:56:36] 2026-03-13 16:56:16,369 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 17:56:36] 2026-03-13 16:56:26,269 | INFO     | [monitor] cgroup control has ended
[2026-03-13 17:56:36] 2026-03-13 16:56:27,101 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349839882048)>', '<ExcThread(monitor, started 140349263574784)>']
[2026-03-13 17:56:36] 2026-03-13 16:56:27,433 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 17:56:36] 2026-03-13 16:56:27,433 | INFO     | [monitor] control thread has ended
[2026-03-13 17:56:36] 2026-03-13 16:56:32,126 | INFO     | all workflow threads have been joined
[2026-03-13 17:56:36] 2026-03-13 16:56:32,126 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 17:56:36] 2026-03-13 16:56:32,127 | INFO     | traces error code: 0
[2026-03-13 17:56:36] 2026-03-13 16:56:32,127 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 17:56:36] 2026-03-13 16:56:32,535 [wrapper] ==== pilot stdout END ====
[2026-03-13 17:56:36] 2026-03-13 16:56:32,583 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 17:56:36] 2026-03-13 16:56:32,630 [wrapper] pilotpid: 917
[2026-03-13 17:56:36] 2026-03-13 16:56:32,719 [wrapper] Pilot exit status: 0
[2026-03-13 17:56:36] 2026-03-13 16:56:33,155 [wrapper] pandaids: 7043636208
[2026-03-13 17:56:36] 2026-03-13 16:56:33,979 [wrapper] cleanup supervisor_pilot 13289 918
[2026-03-13 17:56:36] 2026-03-13 16:56:34,055 [wrapper] Test setup, not cleaning
[2026-03-13 17:56:36] 2026-03-13 16:56:34,152 [wrapper] apfmon messages muted
[2026-03-13 17:56:36] 2026-03-13 16:56:34,255 [wrapper] ==== wrapper stdout END ====
[2026-03-13 17:56:36] 2026-03-13 16:56:34,369 [wrapper] ==== wrapper stderr END ====
[2026-03-13 17:56:36]  *** Error codes and diagnostics ***
[2026-03-13 17:56:36]     "exeErrorCode": 0,
[2026-03-13 17:56:36]     "exeErrorDiag": "",
[2026-03-13 17:56:36]     "pilotErrorCode": 0,
[2026-03-13 17:56:36]     "pilotErrorDiag": "",
[2026-03-13 17:56:36]  *** Listing of results directory ***
[2026-03-13 17:56:36] total 622192
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc    585013 Mar 13 00:01 pilot3.tar.gz
[2026-03-13 17:56:36] -rwx------. 1 boinc boinc     36322 Mar 13 00:01 runpilot2-wrapper.sh
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc      5111 Mar 13 00:01 queuedata.json
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc       100 Mar 13 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 17:56:36] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 14:02 run_atlas
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc       105 Mar 13 14:02 job.xml
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc      6391 Mar 13 14:02 init_data.xml
[2026-03-13 17:56:36] -rw-r--r--. 2 boinc boinc 445915935 Mar 13 14:02 EVNT.46701403._001519.pool.root.1
[2026-03-13 17:56:36] -rw-r--r--. 2 boinc boinc     15845 Mar 13 14:02 start_atlas.sh
[2026-03-13 17:56:36] drwxrwx--x. 2 boinc boinc        68 Mar 13 14:02 shared
[2026-03-13 17:56:36] -rw-r--r--. 2 boinc boinc    597531 Mar 13 14:02 input.tar.gz
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc         0 Mar 13 14:02 boinc_lockfile
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc      2563 Mar 13 14:03 pandaJob.out
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc       415 Mar 13 14:09 workernode_map.json
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc   1006473 Mar 13 14:09 agis_schedconf.cvmfs.json
[2026-03-13 17:56:36] drwx------. 5 boinc boinc      4096 Mar 13 14:09 pilot3
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc 182568699 Mar 13 17:54 HITS.48955010._026256.pool.root.1
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc       532 Mar 13 17:54 boinc_task_state.xml
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc      1013 Mar 13 17:55 memory_monitor_summary.json
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc   1511579 Mar 13 17:55 agis_ddmendpoints.agis.ALL.json
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc        95 Mar 13 17:55 pilot_heartbeat.json
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc    465737 Mar 13 17:55 log.48955010._026256.job.log.tgz.1
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc      6329 Mar 13 17:55 heartbeat.json
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc      8192 Mar 13 17:56 boinc_mmap_file
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc        28 Mar 13 17:56 wrapper_checkpoint.txt
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc      4878 Mar 13 17:56 pilotlog.txt
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc   1895475 Mar 13 17:56 log.48955010._026256.job.log.1
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc       357 Mar 13 17:56 output.list
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc       620 Mar 13 17:56 runtime_log
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc   2375680 Mar 13 17:56 result.tar.gz
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc      8816 Mar 13 17:56 runtime_log.err
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc       656 Mar 13 17:56 EJCLDmDD4K9n9Rq4apOajLDm4fhM0noT9bVooX4SDmmXlLDmTTFwnm.diag
[2026-03-13 17:56:36] -rw-r--r--. 1 boinc boinc     20716 Mar 13 17:56 stderr.txt
[2026-03-13 17:56:36] HITS file was successfully produced:
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc 182568699 Mar 13 17:54 shared/HITS.pool.root.1
[2026-03-13 17:56:36]  *** Contents of shared directory: ***
[2026-03-13 17:56:36] total 616680
[2026-03-13 17:56:36] -rw-r--r--. 2 boinc boinc 445915935 Mar 13 14:02 ATLAS.root_0
[2026-03-13 17:56:36] -rw-r--r--. 2 boinc boinc     15845 Mar 13 14:02 start_atlas.sh
[2026-03-13 17:56:36] -rw-r--r--. 2 boinc boinc    597531 Mar 13 14:02 input.tar.gz
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc 182568699 Mar 13 17:54 HITS.pool.root.1
[2026-03-13 17:56:36] -rw-------. 1 boinc boinc   2375680 Mar 13 17:56 result.tar.gz
17:56:38 (29213): run_atlas exited; CPU time 51899.350468
17:56:38 (29213): called boinc_finish(0)

</stderr_txt>
]]>

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