Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:35:39 (340470): wrapper (7.7.26015): starting
21:35:39 (340470): wrapper: running run_atlas (--nthreads 12)
[2026-03-12 21:35:39] Arguments: --nthreads 12
[2026-03-12 21:35:39] Threads: 12
[2026-03-12 21:35:39] Checking for CVMFS
[2026-03-12 21:35:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 21:35:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 21:35:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 21:35:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 21:35:41] 2.11.5.0 2445133 181861 239104 157227 3 726 41185524 45568001 28345 130560 0 1633024329 99.815 905602694 24800 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2026-03-12 21:35:41] CVMFS is ok
[2026-03-12 21:35:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 21:35:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 21:35:41] Further information can be found at the LHC@home message board.
[2026-03-12 21:35:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 21:35:41] Checking for apptainer binary...
[2026-03-12 21:35:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 21:35:41] Running /usr/bin/apptainer --version
[2026-03-12 21:35:41] apptainer version 1.4.1-1.el9
[2026-03-12 21:35:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 21:35:41] wns0048.triumf.lcg
[2026-03-12 21:35:41] apptainer works
[2026-03-12 21:35:42] Set ATHENA_PROC_NUMBER=12
[2026-03-12 21:35:42] Set ATHENA_CORE_NUMBER=12
[2026-03-12 21:35:42] Starting ATLAS job with PandaID=7043635900
[2026-03-12 21:35:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 21:40:29]  *** The last 200 lines of the pilot log: ***
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | WARNING  | wrong length of table data, x=[1773376626.0], y=[1110.0] (must be same and length>=4)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | could have reported an average CPU frequency of 2793 MHz (4 samples)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | ..............................
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . Timing measurements:
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . get job = 0 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . initial setup = 16 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . payload setup = 16 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . stage-in = 0 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . payload execution = 40 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . stage-out = 1 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . log creation = 0 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | ..............................
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7043635900/pilotlog.txt
[2026-03-12 21:40:30] 2026-03-13 04:39:37,468 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-12 21:40:30] - Log from pilotlog.txt -
[2026-03-12 21:40:30] 2026-03-13 04:39:37,396 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7043635900/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,412 | INFO     | extracted standard info from prmon json
[2026-03-12 21:40:30] 2026-03-13 04:39:37,412 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 21:40:30] 2026-03-13 04:39:37,412 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 21:40:30] 2026-03-13 04:39:37,412 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | WARNING  | wrong length of table data, x=[1773376626.0], y=[1110.0] (must be same and length>=4)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | could have reported an average CPU frequency of 2793 MHz (4 samples)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | ..............................
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . Timing measurements:
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . get job = 0 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . initial setup = 16 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . payload setup = 16 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . stage-in = 0 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . payload execution = 40 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . stage-out = 1 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . log creation = 0 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | ..............................
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7043635900/pilotlog.txt
[2026-03-12 21:40:30] 2026-03-13 04:39:37,468 | WARNING  | 
[2026-03-12 21:40:30] [begin log extracts]
[2026-03-12 21:40:30] - Log from pilotlog.txt -
[2026-03-12 21:40:30] 2026-03-13 04:39:37,396 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7043635900/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,412 | INFO     | extracted standard info from prmon json
[2026-03-12 21:40:30] 2026-03-13 04:39:37,412 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 21:40:30] 2026-03-13 04:39:37,412 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 21:40:30] 2026-03-13 04:39:37,412 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | WARNING  | wrong length of table data, x=[1773376626.0], y=[1110.0] (must be same and length>=4)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | could have reported an average CPU frequency of 2793 MHz (4 samples)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | ..............................
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . Timing measurements:
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . get job = 0 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . initial setup = 16 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,413 | INFO     | . payload setup = 16 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . stage-in = 0 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . payload execution = 40 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . stage-out = 1 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | . log creation = 0 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | ..............................
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-12 21:40:30] 2026-03-13 04:39:37,414 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7043635900/pilotlog.txt
[2026-03-12 21:40:30] [end log extracts]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,468 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,469 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-12 21:40:30] 2026-03-13 04:39:37,711 | INFO     | 
[2026-03-12 21:40:30] 2026-03-13 04:39:37,711 | INFO     | job summary report
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | --------------------------------------------------
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | PanDA job id: 7043635900
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | task id: 48955006
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-12 21:37:23,030 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | pilot state: failed 
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | transexitcode: 65
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | exeerrorcode: 65
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | exitcode: 65
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | cpuconsumptiontime: 13 s
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | nevents: 0
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | neventsw: 0
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | pid: 356142
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | pgrp: 356142
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | corecount: 12
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | event service: False
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | sizes: {0: 2279142, 1: 2280257, 12: 2280257, 61: 2303672, 62: 2303648, 64: 2307968, 68: 2308152, 184: 2308318}
[2026-03-12 21:40:30] 2026-03-13 04:39:37,712 | INFO     | --------------------------------------------------
[2026-03-12 21:40:30] 2026-03-13 04:39:37,713 | INFO     | 
[2026-03-12 21:40:30] 2026-03-13 04:39:37,713 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-12 21:40:30] 2026-03-13 04:39:37,786 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,787 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,788 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,788 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,788 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,788 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 21:40:30] 2026-03-13 04:39:37,788 | INFO     | job 7043635900 has completed (purged errors)
[2026-03-12 21:40:30] 2026-03-13 04:39:37,788 | INFO     | overall cleanup function is called
[2026-03-12 21:40:30] 2026-03-13 04:39:38,794 | INFO     | --- collectZombieJob: --- 10, [356142]
[2026-03-12 21:40:30] 2026-03-13 04:39:38,794 | INFO     | zombie collector waiting for pid 356142
[2026-03-12 21:40:30] 2026-03-13 04:39:38,795 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 21:40:30] 2026-03-13 04:39:38,795 | INFO     | collected zombie processes
[2026-03-12 21:40:30] 2026-03-13 04:39:38,795 | INFO     | will attempt to kill all subprocesses of pid=356142
[2026-03-12 21:40:30] 2026-03-13 04:39:39,557 | INFO     | process IDs to be killed: [356142] (in reverse order)
[2026-03-12 21:40:30] 2026-03-13 04:39:39,916 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 21:40:30] 2026-03-13 04:39:39,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 21:40:30] 2026-03-13 04:39:40,048 | INFO     | did not find any defunct processes belonging to 356142
[2026-03-12 21:40:30] 2026-03-13 04:39:40,123 | INFO     | did not find any defunct processes belonging to 356142
[2026-03-12 21:40:30] 2026-03-13 04:39:40,123 | INFO     | ready for new job
[2026-03-12 21:40:30] 2026-03-13 04:39:40,124 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 21:40:30] 2026-03-13 04:39:40,125 | INFO     | **************************************
[2026-03-12 21:40:30] 2026-03-13 04:39:40,155 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 21:40:30] 2026-03-13 04:39:40,156 | INFO     | **************************************
[2026-03-12 21:40:30] 2026-03-13 04:39:40,156 | INFO     | 
[2026-03-12 21:40:30] 2026-03-13 04:39:40,157 | INFO     | architecture information:
[2026-03-12 21:40:30] 2026-03-13 04:39:40,176 | INFO     | executing command: cat /etc/os-release
[2026-03-12 21:40:30] 2026-03-13 04:39:40,227 | INFO     | cat /etc/os-release:
[2026-03-12 21:40:30] NAME="CentOS Linux"
[2026-03-12 21:40:30] VERSION="7 (Core)"
[2026-03-12 21:40:30] ID="centos"
[2026-03-12 21:40:30] ID_LIKE="rhel fedora"
[2026-03-12 21:40:30] VERSION_ID="7"
[2026-03-12 21:40:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 21:40:30] ANSI_COLOR="0;31"
[2026-03-12 21:40:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 21:40:30] HOME_URL="https://www.centos.org/"
[2026-03-12 21:40:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 21:40:30] 
[2026-03-12 21:40:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 21:40:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 21:40:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 21:40:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 21:40:30] 
[2026-03-12 21:40:30] 2026-03-13 04:39:40,228 | INFO     | **************************************
[2026-03-12 21:40:30] 2026-03-13 04:39:40,732 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-12 21:40:30] 2026-03-13 04:39:40,759 | INFO     | sufficient remaining disk space (2033535942656 B)
[2026-03-12 21:40:30] 2026-03-13 04:39:40,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 21:40:30] 2026-03-13 04:39:40,760 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 21:40:30] 2026-03-13 04:39:40,760 | INFO     | update_server=False
[2026-03-12 21:40:30] 2026-03-13 04:39:40,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 21:40:30] 2026-03-13 04:39:40,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 21:40:30] 2026-03-13 04:39:40,778 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 21:40:30] 2026-03-13 04:39:40,778 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 21:40:30] 2026-03-13 04:39:40,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 21:40:30] 2026-03-13 04:39:40,779 | INFO     | will abort loop
[2026-03-12 21:40:30] 2026-03-13 04:39:40,873 | INFO     | all job control threads have been joined
[2026-03-12 21:40:30] 2026-03-13 04:39:41,020 | INFO     | all payload control threads have been joined
[2026-03-12 21:40:30] 2026-03-13 04:39:41,548 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 21:40:30] 2026-03-13 04:39:41,728 | INFO     | all data control threads have been joined
[2026-03-12 21:40:30] 2026-03-13 04:39:41,765 | INFO     | [job] retrieve thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:41,768 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:41,784 | INFO     | [job] job monitor thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:41,828 | INFO     | [job] validate thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:41,856 | INFO     | [data] copytool_in thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:41,879 | INFO     | [job] control thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:41,990 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:42,027 | INFO     | [payload] control thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:42,519 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:42,605 | INFO     | [payload] failed_post thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:42,723 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 21:40:30] 2026-03-13 04:39:42,734 | INFO     | [data] control thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:42,873 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:42,875 | INFO     | [payload] validate_post thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:43,555 | INFO     | [data] copytool_out thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:43,729 | INFO     | [job] queue monitor thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:39:44,777 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 21:40:30] 2026-03-13 04:40:10,961 | INFO     | PID=344223 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 21:40:30] 2026-03-13 04:40:10,961 | INFO     | .. there are 42 such processes running
[2026-03-12 21:40:30] 2026-03-13 04:40:10,965 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 21:40:30] 2026-03-13 04:40:10,965 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 21:40:30] 2026-03-13 04:40:10,965 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 21:40:30] 2026-03-13 04:40:22,290 | INFO     | [monitor] cgroup control has ended
[2026-03-12 21:40:30] 2026-03-13 04:40:23,237 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140619672426304)>', '<ExcThread(monitor, started 140619259287296)>']
[2026-03-12 21:40:30] 2026-03-13 04:40:24,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 21:40:30] 2026-03-13 04:40:24,044 | INFO     | [monitor] control thread has ended
[2026-03-12 21:40:30] 2026-03-13 04:40:28,273 | INFO     | all workflow threads have been joined
[2026-03-12 21:40:30] 2026-03-13 04:40:28,273 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 21:40:30] 2026-03-13 04:40:28,274 | INFO     | traces error code: 0
[2026-03-12 21:40:30] 2026-03-13 04:40:28,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 21:40:30] 2026-03-13 04:40:28,701 [wrapper] ==== pilot stdout END ====
[2026-03-12 21:40:30] 2026-03-13 04:40:28,711 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 21:40:30] 2026-03-13 04:40:28,742 [wrapper] pilotpid: 344223
[2026-03-12 21:40:30] 2026-03-13 04:40:28,772 [wrapper] Pilot exit status: 0
[2026-03-12 21:40:30] 2026-03-13 04:40:28,923 [wrapper] pandaids: 7043635900
[2026-03-12 21:40:30] 2026-03-13 04:40:29,356 [wrapper] cleanup supervisor_pilot  344229 344224
[2026-03-12 21:40:30] 2026-03-13 04:40:29,384 [wrapper] Test setup, not cleaning
[2026-03-12 21:40:30] 2026-03-13 04:40:29,421 [wrapper] apfmon messages muted
[2026-03-12 21:40:30] 2026-03-13 04:40:29,433 [wrapper] ==== wrapper stdout END ====
[2026-03-12 21:40:30] 2026-03-13 04:40:29,447 [wrapper] ==== wrapper stderr END ====
[2026-03-12 21:40:30]  *** Error codes and diagnostics ***
[2026-03-12 21:40:30]     "exeErrorCode": 65,
[2026-03-12 21:40:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-12 21:40:30]     "pilotErrorCode": 1305,
[2026-03-12 21:40:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-12 21:40:30]  *** Listing of results directory ***
[2026-03-12 21:40:30] total 434668
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc    585013 Mar 12 16:01 pilot3.tar.gz
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc      5111 Mar 12 16:01 queuedata.json
[2026-03-12 21:40:30] -rwx------. 1 boinc boinc     36322 Mar 12 16:01 runpilot2-wrapper.sh
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc       100 Mar 12 21:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 21:40:30] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 21:35 run_atlas
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc       105 Mar 12 21:35 job.xml
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc      6594 Mar 12 21:35 init_data.xml
[2026-03-12 21:40:30] -rw-r--r--. 2 boinc boinc 440952163 Mar 12 21:35 EVNT.46701403._000973.pool.root.1
[2026-03-12 21:40:30] -rw-r--r--. 2 boinc boinc     15845 Mar 12 21:35 start_atlas.sh
[2026-03-12 21:40:30] drwxrwx--x. 2 boinc boinc      4096 Mar 12 21:35 shared
[2026-03-12 21:40:30] -rw-r--r--. 2 boinc boinc    597527 Mar 12 21:35 input.tar.gz
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc         0 Mar 12 21:35 boinc_lockfile
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc      2565 Mar 12 21:35 pandaJob.out
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc   1006514 Mar 12 21:36 agis_schedconf.cvmfs.json
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc   1511578 Mar 12 21:36 agis_ddmendpoints.agis.ALL.json
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc       444 Mar 12 21:36 workernode_map.json
[2026-03-12 21:40:30] drwx------. 5 boinc boinc      4096 Mar 12 21:36 pilot3
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc       523 Mar 12 21:37 boinc_task_state.xml
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc       967 Mar 12 21:37 memory_monitor_summary.json
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc     21827 Mar 12 21:37 log.48955006._049153.job.log.tgz.1
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc      7024 Mar 12 21:39 heartbeat.json
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc        95 Mar 12 21:40 pilot_heartbeat.json
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc      5004 Mar 12 21:40 pilotlog.txt
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc      8192 Mar 12 21:40 boinc_mmap_file
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc     86232 Mar 12 21:40 log.48955006._049153.job.log.1
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc        22 Mar 12 21:40 wrapper_checkpoint.txt
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc       188 Mar 12 21:40 output.list
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc       620 Mar 12 21:40 runtime_log
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc    122880 Mar 12 21:40 result.tar.gz
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc      8635 Mar 12 21:40 runtime_log.err
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc       643 Mar 12 21:40 kwbLDm4C4K9n9Rq4apOajLDm4fhM0noT9bVooX4SDmqWlLDmG8UrQn.diag
[2026-03-12 21:40:30] -rw-r--r--. 1 boinc boinc     21812 Mar 12 21:40 stderr.txt
[2026-03-12 21:40:30] No HITS result produced
[2026-03-12 21:40:30]  *** Contents of shared directory: ***
[2026-03-12 21:40:30] total 431344
[2026-03-12 21:40:30] -rw-r--r--. 2 boinc boinc 440952163 Mar 12 21:35 ATLAS.root_0
[2026-03-12 21:40:30] -rw-r--r--. 2 boinc boinc     15845 Mar 12 21:35 start_atlas.sh
[2026-03-12 21:40:30] -rw-r--r--. 2 boinc boinc    597527 Mar 12 21:35 input.tar.gz
[2026-03-12 21:40:30] -rw-------. 1 boinc boinc    122880 Mar 12 21:40 result.tar.gz
21:40:31 (340470): run_atlas exited; CPU time 20.397015
21:40:31 (340470): called boinc_finish(0)

</stderr_txt>
]]>

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