Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:42:57 (2292925): wrapper (7.7.26015): starting
12:42:57 (2292925): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 12:42:57] Arguments: --nthreads 3
[2026-03-13 12:42:57] Threads: 3
[2026-03-13 12:42:57] Checking for CVMFS
[2026-03-13 12:42:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 12:42:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 12:42:58] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 12:42:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 12:42:58] 2.9.2.0 12764 15922 91996 157238 3 50 29777704 36864000 0 130560 0 6387938 99.983 594710 12846 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 12:42:58] CVMFS is ok
[2026-03-13 12:42:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 12:42:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 12:42:58] Further information can be found at the LHC@home message board.
[2026-03-13 12:42:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 12:42:58] Checking for apptainer binary...
[2026-03-13 12:42:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 12:42:58] Running /usr/bin/apptainer --version
[2026-03-13 12:42:58] apptainer version 1.4.1-1.1
[2026-03-13 12:42:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 12:42:58] thA327
[2026-03-13 12:42:58] apptainer works
[2026-03-13 12:42:58] Set ATHENA_PROC_NUMBER=3
[2026-03-13 12:42:58] Set ATHENA_CORE_NUMBER=3
[2026-03-13 12:42:58] Starting ATLAS job with PandaID=7043442110
[2026-03-13 12:42:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 14:17:26]  *** The last 200 lines of the pilot log: ***
[2026-03-13 14:17:26] 2026-03-13 13:16:55,302 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 14:17:26] 2026-03-13 13:16:55,302 | INFO     | collected zombie processes
[2026-03-13 14:17:26] 2026-03-13 13:16:55,302 | INFO     | will attempt to kill all subprocesses of pid=2301401
[2026-03-13 14:17:26] 2026-03-13 13:16:55,343 | INFO     | process IDs to be killed: [2301401] (in reverse order)
[2026-03-13 14:17:26] 2026-03-13 13:16:55,369 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 14:17:26] 2026-03-13 13:16:55,369 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 14:17:26] 2026-03-13 13:16:55,370 | INFO     | did not find any defunct processes belonging to 2301401
[2026-03-13 14:17:26] 2026-03-13 13:16:55,371 | INFO     | did not find any defunct processes belonging to 2301401
[2026-03-13 14:17:26] 2026-03-13 13:16:55,371 | INFO     | ready for new job
[2026-03-13 14:17:26] 2026-03-13 13:16:55,371 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 14:17:26] 2026-03-13 13:16:55,372 | INFO     | **************************************
[2026-03-13 14:17:26] 2026-03-13 13:16:55,372 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 14:17:26] 2026-03-13 13:16:55,372 | INFO     | **************************************
[2026-03-13 14:17:26] 2026-03-13 13:16:55,372 | INFO     | 
[2026-03-13 14:17:26] 2026-03-13 13:16:55,372 | INFO     | architecture information:
[2026-03-13 14:17:26] 2026-03-13 13:16:55,372 | INFO     | executing command: cat /etc/os-release
[2026-03-13 14:17:26] 2026-03-13 13:16:55,382 | INFO     | cat /etc/os-release:
[2026-03-13 14:17:26] NAME="CentOS Linux"
[2026-03-13 14:17:26] VERSION="7 (Core)"
[2026-03-13 14:17:26] ID="centos"
[2026-03-13 14:17:26] ID_LIKE="rhel fedora"
[2026-03-13 14:17:26] VERSION_ID="7"
[2026-03-13 14:17:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 14:17:26] ANSI_COLOR="0;31"
[2026-03-13 14:17:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 14:17:26] HOME_URL="https://www.centos.org/"
[2026-03-13 14:17:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 14:17:26] 
[2026-03-13 14:17:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 14:17:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 14:17:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 14:17:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 14:17:26] 
[2026-03-13 14:17:26] 2026-03-13 13:16:55,382 | INFO     | **************************************
[2026-03-13 14:17:26] 2026-03-13 13:16:55,885 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 14:17:26] 2026-03-13 13:16:55,899 | INFO     | sufficient remaining disk space (372467826688 B)
[2026-03-13 14:17:26] 2026-03-13 13:16:55,899 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 14:17:26] 2026-03-13 13:16:55,899 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 14:17:26] 2026-03-13 13:16:55,899 | INFO     | update_server=False
[2026-03-13 14:17:26] 2026-03-13 13:16:55,899 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 14:17:26] 2026-03-13 13:16:55,899 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 14:17:26] 2026-03-13 13:16:55,899 | INFO     | aborting loop
[2026-03-13 14:17:26] 2026-03-13 13:16:55,900 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 14:17:26] 2026-03-13 13:16:56,271 | INFO     | all data control threads have been joined
[2026-03-13 14:17:26] 2026-03-13 13:16:56,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 14:17:26] 2026-03-13 13:16:56,762 | INFO     | all payload control threads have been joined
[2026-03-13 14:17:26] 2026-03-13 13:16:56,905 | INFO     | [job] job monitor thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:56,905 | INFO     | [job] retrieve thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:56,906 | INFO     | [job] queue monitor thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:56,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 14:17:26] 2026-03-13 13:16:57,065 | INFO     | [data] copytool_in thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:57,236 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:57,277 | INFO     | [data] control thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:57,386 | INFO     | all job control threads have been joined
[2026-03-13 14:17:26] 2026-03-13 13:16:57,540 | INFO     | [payload] failed_post thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:57,768 | INFO     | [payload] control thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:58,057 | INFO     | [payload] validate_post thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:58,302 | INFO     | [job] validate thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:58,354 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:58,392 | INFO     | [job] control thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:58,405 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:16:58,456 | INFO     | [data] copytool_out thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:17:00,982 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:17:06,290 | INFO     | job.realtimelogging is not enabled
[2026-03-13 14:17:26] 2026-03-13 13:17:07,295 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 14:17:26] 2026-03-13 13:17:15,567 | INFO     | [monitor] cgroup control has ended
[2026-03-13 14:17:26] 2026-03-13 13:17:17,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139623217661760)>', '<ExcThread(monitor, started 139622701049600)>']
[2026-03-13 14:17:26] 2026-03-13 13:17:22,631 | INFO     | all workflow threads have been joined
[2026-03-13 14:17:26] 2026-03-13 13:17:22,631 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 14:17:26] 2026-03-13 13:17:22,631 | INFO     | traces error code: 0
[2026-03-13 14:17:26] 2026-03-13 13:17:22,631 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 14:17:26] 2026-03-13 13:17:26,016 | INFO     | PID=2296971 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 14:17:26] 2026-03-13 13:17:26,016 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 14:17:26] 2026-03-13 13:17:26,016 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 14:17:26] 2026-03-13 13:17:26,016 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 14:17:26] 2026-03-13 13:17:26,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 14:17:26] 2026-03-13 13:17:26,016 | INFO     | [monitor] control thread has ended
[2026-03-13 14:17:26] 2026-03-13 13:17:26,062 [wrapper] ==== pilot stdout END ====
[2026-03-13 14:17:26] 2026-03-13 13:17:26,065 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 14:17:26] 2026-03-13 13:17:26,067 [wrapper] pilotpid: 2296971
[2026-03-13 14:17:26] 2026-03-13 13:17:26,070 [wrapper] Pilot exit status: 0
[2026-03-13 14:17:26] 2026-03-13 13:17:26,078 [wrapper] pandaids: 7043442110
[2026-03-13 14:17:26] 2026-03-13 13:17:26,094 [wrapper] cleanup supervisor_pilot 2306855 2296972
[2026-03-13 14:17:26] 2026-03-13 13:17:26,097 [wrapper] Test setup, not cleaning
[2026-03-13 14:17:26] 2026-03-13 13:17:26,099 [wrapper] apfmon messages muted
[2026-03-13 14:17:26] 2026-03-13 13:17:26,102 [wrapper] ==== wrapper stdout END ====
[2026-03-13 14:17:26] 2026-03-13 13:17:26,104 [wrapper] ==== wrapper stderr END ====
[2026-03-13 14:17:26]  *** Error codes and diagnostics ***
[2026-03-13 14:17:26]     "exeErrorCode": 0,
[2026-03-13 14:17:26]     "exeErrorDiag": "",
[2026-03-13 14:17:26]     "pilotErrorCode": 0,
[2026-03-13 14:17:26]     "pilotErrorDiag": "",
[2026-03-13 14:17:26]  *** Listing of results directory ***
[2026-03-13 14:17:26] total 726288
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc    584627 Mar  6 19:15 pilot3.tar.gz
[2026-03-13 14:17:26] -rwx------ 1 boinc boinc     36322 Mar  6 19:56 runpilot2-wrapper.sh
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc      5111 Mar  6 19:57 queuedata.json
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc       100 Mar 13 12:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 14:17:26] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 12:42 run_atlas
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc       105 Mar 13 12:42 job.xml
[2026-03-13 14:17:26] -rw-r--r-- 2 boinc boinc 535868553 Mar 13 12:42 EVNT.48329618._000054.pool.root.1
[2026-03-13 14:17:26] -rw-r--r-- 2 boinc boinc    597944 Mar 13 12:42 input.tar.gz
[2026-03-13 14:17:26] -rw-r--r-- 2 boinc boinc     15845 Mar 13 12:42 start_atlas.sh
[2026-03-13 14:17:26] drwxrwx--x 2 boinc boinc      4096 Mar 13 12:42 shared
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc         0 Mar 13 12:42 boinc_setup_complete
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc      6445 Mar 13 12:42 init_data.xml
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc         0 Mar 13 12:42 boinc_lockfile
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc      2502 Mar 13 12:42 pandaJob.out
[2026-03-13 14:17:26] -rw------- 1 boinc boinc   1006495 Mar 13 12:43 agis_schedconf.cvmfs.json
[2026-03-13 14:17:26] -rw------- 1 boinc boinc   1511578 Mar 13 12:43 agis_ddmendpoints.agis.ALL.json
[2026-03-13 14:17:26] -rw------- 1 boinc boinc       415 Mar 13 12:43 workernode_map.json
[2026-03-13 14:17:26] drwx------ 5 boinc boinc      4096 Mar 13 12:43 pilot3
[2026-03-13 14:17:26] -rw------- 1 boinc boinc 201688184 Mar 13 14:16 HITS.48996069._002693.pool.root.1
[2026-03-13 14:17:26] -rw------- 1 boinc boinc        95 Mar 13 14:16 pilot_heartbeat.json
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc       530 Mar 13 14:16 boinc_task_state.xml
[2026-03-13 14:17:26] -rw------- 1 boinc boinc      1014 Mar 13 14:16 memory_monitor_summary.json
[2026-03-13 14:17:26] -rw------- 1 boinc boinc    296347 Mar 13 14:16 log.48996069._002693.job.log.tgz.1
[2026-03-13 14:17:26] -rw------- 1 boinc boinc      6288 Mar 13 14:16 heartbeat.json
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc      8192 Mar 13 14:17 boinc_mmap_file
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc        27 Mar 13 14:17 wrapper_checkpoint.txt
[2026-03-13 14:17:26] -rw------- 1 boinc boinc       747 Mar 13 14:17 pilotlog.txt
[2026-03-13 14:17:26] -rw------- 1 boinc boinc    819208 Mar 13 14:17 log.48996069._002693.job.log.1
[2026-03-13 14:17:26] -rw------- 1 boinc boinc       357 Mar 13 14:17 output.list
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc       620 Mar 13 14:17 runtime_log
[2026-03-13 14:17:26] -rw------- 1 boinc boinc   1136640 Mar 13 14:17 result.tar.gz
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc      8896 Mar 13 14:17 runtime_log.err
[2026-03-13 14:17:26] -rw------- 1 boinc boinc       657 Mar 13 14:17 j9kLDmCXpI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmrNTLDmGQGCQo.diag
[2026-03-13 14:17:26] -rw-r--r-- 1 boinc boinc     10505 Mar 13 14:17 stderr.txt
[2026-03-13 14:17:26] HITS file was successfully produced:
[2026-03-13 14:17:26] -rw------- 1 boinc boinc 201688184 Mar 13 14:16 shared/HITS.pool.root.1
[2026-03-13 14:17:26]  *** Contents of shared directory: ***
[2026-03-13 14:17:26] total 721996
[2026-03-13 14:17:26] -rw-r--r-- 2 boinc boinc 535868553 Mar 13 12:42 ATLAS.root_0
[2026-03-13 14:17:26] -rw-r--r-- 2 boinc boinc    597944 Mar 13 12:42 input.tar.gz
[2026-03-13 14:17:26] -rw-r--r-- 2 boinc boinc     15845 Mar 13 12:42 start_atlas.sh
[2026-03-13 14:17:26] -rw------- 1 boinc boinc 201688184 Mar 13 14:16 HITS.pool.root.1
[2026-03-13 14:17:26] -rw------- 1 boinc boinc   1136640 Mar 13 14:17 result.tar.gz
14:17:27 (2292925): run_atlas exited; CPU time 16148.277371
14:17:27 (2292925): called boinc_finish(0)

</stderr_txt>
]]>

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