Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:16 (566591): wrapper (7.7.26015): starting
00:02:16 (566591): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 00:02:16] Arguments: --nthreads 8
[2026-03-13 00:02:16] Threads: 8
[2026-03-13 00:02:16] Checking for CVMFS
[2026-03-13 00:02:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 00:02:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 00:02:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 00:02:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 00:02:19] 2.13.3.0 9366 183578 205168 157225 3 420 28651779 32935936 28460 16776704 0 807505161 99.716 613264966 32240 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-13 00:02:19] CVMFS is ok
[2026-03-13 00:02:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 00:02:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 00:02:19] Further information can be found at the LHC@home message board.
[2026-03-13 00:02:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 00:02:19] Checking for apptainer binary...
[2026-03-13 00:02:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 00:02:19] Running /usr/bin/apptainer --version
[2026-03-13 00:02:20] apptainer version 1.4.5-2.el9
[2026-03-13 00:02:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 00:02:21] c-6-2.aglt2.org
[2026-03-13 00:02:21] apptainer works
[2026-03-13 00:02:21] Set ATHENA_PROC_NUMBER=8
[2026-03-13 00:02:21] Set ATHENA_CORE_NUMBER=8
[2026-03-13 00:02:21] Starting ATLAS job with PandaID=7043635445
[2026-03-13 00:02:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:27:59 (1397637): wrapper (7.7.26015): starting
02:27:59 (1397637): wrapper: running run_atlas (--nthreads 12)
[2026-03-14 02:27:59] Arguments: --nthreads 12
[2026-03-14 02:27:59] Threads: 12
[2026-03-14 02:27:59] This job has been restarted, cleaning up previous attempt
[2026-03-14 02:27:59] Checking for CVMFS
[2026-03-14 02:28:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 02:28:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 02:28:00] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 02:28:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 02:28:00] 2.13.3.0 9366 185164 209116 157268 3 495 30254997 32935936 23375 16776704 0 810488813 99.715 616604986 32231 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-14 02:28:00] CVMFS is ok
[2026-03-14 02:28:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 02:28:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 02:28:00] Further information can be found at the LHC@home message board.
[2026-03-14 02:28:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 02:28:00] Checking for apptainer binary...
[2026-03-14 02:28:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 02:28:00] Running /usr/bin/apptainer --version
[2026-03-14 02:28:01] apptainer version 1.4.5-2.el9
[2026-03-14 02:28:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 02:28:01] c-6-2.aglt2.org
[2026-03-14 02:28:01] apptainer works
[2026-03-14 02:28:01] Set ATHENA_PROC_NUMBER=12
[2026-03-14 02:28:01] Set ATHENA_CORE_NUMBER=12
[2026-03-14 02:28:01] Starting ATLAS job with PandaID=7043635445
[2026-03-14 02:28:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 09:31:38]  *** The last 200 lines of the pilot log: ***
[2026-03-14 09:31:38] 2026-03-14 13:31:01,009 | INFO     | preparing for final server update for job 7043635445 in state='finished'
[2026-03-14 09:31:38] 2026-03-14 13:31:01,010 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7043635445/jobReport.json
[2026-03-14 09:31:38] 2026-03-14 13:31:01,012 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-14 09:31:38] 2026-03-14 13:31:01,012 | INFO     | this job has now completed (state=finished)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,013 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,013 | INFO     | log transfer has been attempted: DONE
[2026-03-14 09:31:38] 2026-03-14 13:31:01,013 | INFO     | job 7043635445 has finished - writing final server update
[2026-03-14 09:31:38] 2026-03-14 13:31:01,023 | INFO     | total number of processed events: 400 (read)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,049 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7043635445/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,050 | INFO     | extracted standard info from prmon json
[2026-03-14 09:31:38] 2026-03-14 13:31:01,062 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 09:31:38] 2026-03-14 13:31:01,062 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 09:31:38] 2026-03-14 13:31:01,063 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 09:31:38] 2026-03-14 13:31:01,063 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 09:31:38] 2026-03-14 13:31:01,077 | INFO     | fitting pss+swap vs Time
[2026-03-14 09:31:38] 2026-03-14 13:31:01,087 | INFO     | sum of square deviations: 22162776763.894073
[2026-03-14 09:31:38] 2026-03-14 13:31:01,086 | INFO     | monitor loop #1228: job 0:7043635445 is in state 'finished'
[2026-03-14 09:31:38] 2026-03-14 13:31:01,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,096 | INFO     | sum of deviations: -34726791388.31329
[2026-03-14 09:31:38] 2026-03-14 13:31:01,096 | INFO     | mean x: 1773482403.139759
[2026-03-14 09:31:38] 2026-03-14 13:31:01,096 | INFO     | mean y: 2703725.8674698793
[2026-03-14 09:31:38] 2026-03-14 13:31:01,097 | INFO     | intersect: 2781568220.185367
[2026-03-14 09:31:38] 2026-03-14 13:31:01,097 | INFO     | chi2: 3.1142302119939096
[2026-03-14 09:31:38] 2026-03-14 13:31:01,098 | INFO     | sum of square deviations: 21371524370.195198
[2026-03-14 09:31:38] 2026-03-14 13:31:01,107 | INFO     | sum of deviations: -5788711151.3414345
[2026-03-14 09:31:38] 2026-03-14 13:31:01,108 | INFO     | mean x: 1773482250.6585367
[2026-03-14 09:31:38] 2026-03-14 13:31:01,108 | INFO     | mean y: 2709249.4975609756
[2026-03-14 09:31:38] 2026-03-14 13:31:01,108 | INFO     | intersect: 483076316.59411407
[2026-03-14 09:31:38] 2026-03-14 13:31:01,109 | INFO     | chi2: 2.4206961463676246
[2026-03-14 09:31:38] 2026-03-14 13:31:01,109 | INFO     | current chi2=2.4206961463676246 (change=22.26983936368161 %)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,109 | INFO     | right removable region: 409
[2026-03-14 09:31:38] 2026-03-14 13:31:01,120 | INFO     | sum of square deviations: 21371058503.22188
[2026-03-14 09:31:38] 2026-03-14 13:31:01,128 | INFO     | sum of deviations: -125557533495.89273
[2026-03-14 09:31:38] 2026-03-14 13:31:01,128 | INFO     | mean x: 1773482555.6658537
[2026-03-14 09:31:38] 2026-03-14 13:31:01,129 | INFO     | mean y: 2721155.3219512193
[2026-03-14 09:31:38] 2026-03-14 13:31:01,129 | INFO     | intersect: 10422144009.544485
[2026-03-14 09:31:38] 2026-03-14 13:31:01,129 | INFO     | chi2: 1.1341028742178219
[2026-03-14 09:31:38] 2026-03-14 13:31:01,129 | INFO     | current chi2=1.1341028742178219 (change=63.583203648528475 %)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,130 | INFO     | sum of square deviations: 20598435258.360283
[2026-03-14 09:31:38] 2026-03-14 13:31:01,145 | INFO     | sum of deviations: -123542703740.26915
[2026-03-14 09:31:38] 2026-03-14 13:31:01,146 | INFO     | mean x: 1773482708.1901236
[2026-03-14 09:31:38] 2026-03-14 13:31:01,146 | INFO     | mean y: 2720737.7827160493
[2026-03-14 09:31:38] 2026-03-14 13:31:01,146 | INFO     | intersect: 10639492223.495264
[2026-03-14 09:31:38] 2026-03-14 13:31:01,147 | INFO     | chi2: 1.0960593842394144
[2026-03-14 09:31:38] 2026-03-14 13:31:01,147 | INFO     | current chi2=1.0960593842394144 (change=3.354500799113627 %)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,147 | INFO     | left removable region: 20
[2026-03-14 09:31:38] 2026-03-14 13:31:01,148 | INFO     | sum of square deviations: 18252469544.71459
[2026-03-14 09:31:38] 2026-03-14 13:31:01,153 | INFO     | sum of deviations: -56979908708.874
[2026-03-14 09:31:38] 2026-03-14 13:31:01,153 | INFO     | mean x: 1773482830.2107968
[2026-03-14 09:31:38] 2026-03-14 13:31:01,153 | INFO     | mean y: 2718839.3033419023
[2026-03-14 09:31:38] 2026-03-14 13:31:01,153 | INFO     | intersect: 5539114312.5081625
[2026-03-14 09:31:38] 2026-03-14 13:31:01,154 | INFO     | chi2: 0.30384034177021185
[2026-03-14 09:31:38] 2026-03-14 13:31:01,154 | INFO     | current memory leak: -3.12 B/s (using 389 data points, chi2=0.30)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,155 | INFO     | could have reported an average CPU frequency of 2599 MHz (17 samples)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,155 | INFO     | ..............................
[2026-03-14 09:31:38] 2026-03-14 13:31:01,155 | INFO     | . Timing measurements:
[2026-03-14 09:31:38] 2026-03-14 13:31:01,155 | INFO     | . get job = 0 s
[2026-03-14 09:31:38] 2026-03-14 13:31:01,156 | INFO     | . initial setup = 4 s
[2026-03-14 09:31:38] 2026-03-14 13:31:01,156 | INFO     | . payload setup = 27 s
[2026-03-14 09:31:38] 2026-03-14 13:31:01,156 | INFO     | . stage-in = 0 s
[2026-03-14 09:31:38] 2026-03-14 13:31:01,156 | INFO     | . payload execution = 25296 s
[2026-03-14 09:31:38] 2026-03-14 13:31:01,159 | INFO     | . stage-out = 3 s
[2026-03-14 09:31:38] 2026-03-14 13:31:01,159 | INFO     | . log creation = 0 s
[2026-03-14 09:31:38] 2026-03-14 13:31:01,159 | INFO     | ..............................
[2026-03-14 09:31:38] 2026-03-14 13:31:01,286 | INFO     | 
[2026-03-14 09:31:38] 2026-03-14 13:31:01,286 | INFO     | job summary report
[2026-03-14 09:31:38] 2026-03-14 13:31:01,286 | INFO     | --------------------------------------------------
[2026-03-14 09:31:38] 2026-03-14 13:31:01,286 | INFO     | PanDA job id: 7043635445
[2026-03-14 09:31:38] 2026-03-14 13:31:01,286 | INFO     | task id: 48955006
[2026-03-14 09:31:38] 2026-03-14 13:31:01,287 | INFO     | errors: (none)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,287 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 09:31:38] 2026-03-14 13:31:01,287 | INFO     | pilot state: finished 
[2026-03-14 09:31:38] 2026-03-14 13:31:01,287 | INFO     | transexitcode: 0
[2026-03-14 09:31:38] 2026-03-14 13:31:01,287 | INFO     | exeerrorcode: 0
[2026-03-14 09:31:38] 2026-03-14 13:31:01,287 | INFO     | exeerrordiag: 
[2026-03-14 09:31:38] 2026-03-14 13:31:01,287 | INFO     | exitcode: 0
[2026-03-14 09:31:38] 2026-03-14 13:31:01,287 | INFO     | exitmsg: OK
[2026-03-14 09:31:38] 2026-03-14 13:31:01,288 | INFO     | cpuconsumptiontime: 45955 s
[2026-03-14 09:31:38] 2026-03-14 13:31:01,288 | INFO     | nevents: 400
[2026-03-14 09:31:38] 2026-03-14 13:31:01,288 | INFO     | neventsw: 0
[2026-03-14 09:31:38] 2026-03-14 13:31:01,288 | INFO     | pid: 1412527
[2026-03-14 09:31:38] 2026-03-14 13:31:01,288 | INFO     | pgrp: 1412527
[2026-03-14 09:31:38] 2026-03-14 13:31:01,288 | INFO     | corecount: 12
[2026-03-14 09:31:38] 2026-03-14 13:31:01,288 | INFO     | event service: False
[2026-03-14 09:31:38] 2026-03-14 13:31:01,288 | INFO     | sizes: {0: 2279142, 1: 2279827, 2: 2280288, 3: 2280288, 25327: 2315433, 25332: 2324431, 25334: 2324615, 25336: 2324873}
[2026-03-14 09:31:38] 2026-03-14 13:31:01,288 | INFO     | --------------------------------------------------
[2026-03-14 09:31:38] 2026-03-14 13:31:01,289 | INFO     | 
[2026-03-14 09:31:38] 2026-03-14 13:31:01,289 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-14 09:31:38] 2026-03-14 13:31:01,345 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,346 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,346 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,346 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,347 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,347 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,347 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,347 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,347 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,347 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,347 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,348 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,348 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,348 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,348 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,348 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 09:31:38] 2026-03-14 13:31:01,348 | INFO     | job 7043635445 has completed (purged errors)
[2026-03-14 09:31:38] 2026-03-14 13:31:01,348 | INFO     | overall cleanup function is called
[2026-03-14 09:31:38] 2026-03-14 13:31:02,366 | INFO     | --- collectZombieJob: --- 10, [1412527]
[2026-03-14 09:31:38] 2026-03-14 13:31:02,366 | INFO     | zombie collector waiting for pid 1412527
[2026-03-14 09:31:38] 2026-03-14 13:31:02,366 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 09:31:38] 2026-03-14 13:31:02,367 | INFO     | collected zombie processes
[2026-03-14 09:31:38] 2026-03-14 13:31:02,367 | INFO     | will attempt to kill all subprocesses of pid=1412527
[2026-03-14 09:31:38] 2026-03-14 13:31:03,070 | INFO     | process IDs to be killed: [1412527] (in reverse order)
[2026-03-14 09:31:38] 2026-03-14 13:31:03,243 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 09:31:38] 2026-03-14 13:31:03,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 09:31:38] 2026-03-14 13:31:03,279 | INFO     | did not find any defunct processes belonging to 1412527
[2026-03-14 09:31:38] 2026-03-14 13:31:03,322 | INFO     | did not find any defunct processes belonging to 1412527
[2026-03-14 09:31:38] 2026-03-14 13:31:03,322 | INFO     | ready for new job
[2026-03-14 09:31:38] 2026-03-14 13:31:03,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 09:31:38] 2026-03-14 13:31:03,332 | INFO     | **************************************
[2026-03-14 09:31:38] 2026-03-14 13:31:03,332 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 09:31:38] 2026-03-14 13:31:03,332 | INFO     | **************************************
[2026-03-14 09:31:38] 2026-03-14 13:31:03,332 | INFO     | 
[2026-03-14 09:31:38] 2026-03-14 13:31:03,334 | INFO     | architecture information:
[2026-03-14 09:31:38] 2026-03-14 13:31:03,335 | INFO     | executing command: cat /etc/os-release
[2026-03-14 09:31:38] 2026-03-14 13:31:03,378 | INFO     | cat /etc/os-release:
[2026-03-14 09:31:38] NAME="CentOS Linux"
[2026-03-14 09:31:38] VERSION="7 (Core)"
[2026-03-14 09:31:38] ID="centos"
[2026-03-14 09:31:38] ID_LIKE="rhel fedora"
[2026-03-14 09:31:38] VERSION_ID="7"
[2026-03-14 09:31:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 09:31:38] ANSI_COLOR="0;31"
[2026-03-14 09:31:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 09:31:38] HOME_URL="https://www.centos.org/"
[2026-03-14 09:31:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 09:31:38] 
[2026-03-14 09:31:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 09:31:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 09:31:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 09:31:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 09:31:38] 
[2026-03-14 09:31:38] 2026-03-14 13:31:03,379 | INFO     | **************************************
[2026-03-14 09:31:38] 2026-03-14 13:31:03,882 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-14 09:31:38] 2026-03-14 13:31:03,983 | INFO     | sufficient remaining disk space (72493301760 B)
[2026-03-14 09:31:38] 2026-03-14 13:31:03,984 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 09:31:38] 2026-03-14 13:31:03,984 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 09:31:38] 2026-03-14 13:31:03,984 | INFO     | update_server=False
[2026-03-14 09:31:38] 2026-03-14 13:31:03,984 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 09:31:38] 2026-03-14 13:31:04,042 | INFO     | all data control threads have been joined
[2026-03-14 09:31:38] 2026-03-14 13:31:04,422 | INFO     | all payload control threads have been joined
[2026-03-14 09:31:38] 2026-03-14 13:31:04,622 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 09:31:38] 2026-03-14 13:31:04,624 | INFO     | aborting loop
[2026-03-14 09:31:38] 2026-03-14 13:31:04,990 | INFO     | [job] retrieve thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:05,000 | INFO     | [data] copytool_in thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:05,048 | INFO     | [data] control thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:05,098 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 09:31:38] 2026-03-14 13:31:05,107 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:05,203 | INFO     | [payload] failed_post thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:05,231 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:05,307 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:05,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 09:31:38] 2026-03-14 13:31:05,427 | INFO     | [payload] control thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:05,629 | INFO     | [job] job monitor thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:05,688 | INFO     | all job control threads have been joined
[2026-03-14 09:31:38] 2026-03-14 13:31:06,252 | INFO     | [payload] validate_post thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:06,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 09:31:38] 2026-03-14 13:31:06,422 | INFO     | [job] validate thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:06,701 | INFO     | [job] control thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:07,105 | INFO     | [data] copytool_out thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:07,312 | INFO     | [job] queue monitor thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:09,436 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:14,217 | INFO     | job.realtimelogging is not enabled
[2026-03-14 09:31:38] 2026-03-14 13:31:15,227 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 09:31:38] 2026-03-14 13:31:31,533 | INFO     | [monitor] cgroup control has ended
[2026-03-14 09:31:38] 2026-03-14 13:31:32,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867829958464)>', '<ExcThread(monitor, started 139867170248448)>']
[2026-03-14 09:31:38] 2026-03-14 13:31:34,383 | INFO     | PID=1407780 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 09:31:38] 2026-03-14 13:31:34,384 | INFO     | .. there are 41 such processes running
[2026-03-14 09:31:38] 2026-03-14 13:31:34,385 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 09:31:38] 2026-03-14 13:31:34,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 09:31:38] 2026-03-14 13:31:34,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 09:31:38] 2026-03-14 13:31:34,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 09:31:38] 2026-03-14 13:31:34,385 | INFO     | [monitor] control thread has ended
[2026-03-14 09:31:38] 2026-03-14 13:31:37,103 | INFO     | all workflow threads have been joined
[2026-03-14 09:31:38] 2026-03-14 13:31:37,104 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 09:31:38] 2026-03-14 13:31:37,104 | INFO     | traces error code: 0
[2026-03-14 09:31:38] 2026-03-14 13:31:37,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 09:31:38] 2026-03-14 13:31:37,572 [wrapper] ==== pilot stdout END ====
[2026-03-14 09:31:38] 2026-03-14 13:31:37,584 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 09:31:38] 2026-03-14 13:31:37,614 [wrapper] pilotpid: 1407780
[2026-03-14 09:31:38] 2026-03-14 13:31:37,621 [wrapper] Pilot exit status: 0
[2026-03-14 09:31:38] 2026-03-14 13:31:37,661 [wrapper] pandaids: 7043635445 7043635445
[2026-03-14 09:31:38] 2026-03-14 13:31:37,760 [wrapper] cleanup supervisor_pilot 2732599 1407781
[2026-03-14 09:31:38] 2026-03-14 13:31:37,791 [wrapper] Test setup, not cleaning
[2026-03-14 09:31:38] 2026-03-14 13:31:37,805 [wrapper] apfmon messages muted
[2026-03-14 09:31:38] 2026-03-14 13:31:37,848 [wrapper] ==== wrapper stdout END ====
[2026-03-14 09:31:38] 2026-03-14 13:31:37,911 [wrapper] ==== wrapper stderr END ====
[2026-03-14 09:31:38]  *** Error codes and diagnostics ***
[2026-03-14 09:31:38]     "exeErrorCode": 0,
[2026-03-14 09:31:38]     "exeErrorDiag": "",
[2026-03-14 09:31:38]     "pilotErrorCode": 0,
[2026-03-14 09:31:38]     "pilotErrorDiag": "",
[2026-03-14 09:31:38]  *** Listing of results directory ***
[2026-03-14 09:31:38] total 1048104
[2026-03-14 09:31:38] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas    585013 Mar 12 18:18 pilot3.tar.gz
[2026-03-14 09:31:38] -rwx------. 1 boincer umatlas     36322 Mar 12 18:20 runpilot2-wrapper.sh
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas      5111 Mar 12 18:21 queuedata.json
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas       100 Mar 13 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 09:31:38] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 13 00:02 run_atlas
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas       105 Mar 13 00:02 job.xml
[2026-03-14 09:31:38] -rw-r--r--. 3 boincer umatlas 439915304 Mar 13 00:02 EVNT.46701403._000970.pool.root.1
[2026-03-14 09:31:38] -rw-r--r--. 3 boincer umatlas 439915304 Mar 13 00:02 ATLAS.root_0
[2026-03-14 09:31:38] -rw-r--r--. 2 boincer umatlas     15845 Mar 13 00:02 start_atlas.sh
[2026-03-14 09:31:38] drwxrwx--x. 2 boincer umatlas      4096 Mar 13 00:02 shared
[2026-03-14 09:31:38] -rw-r--r--. 2 boincer umatlas    597531 Mar 13 00:02 input.tar.gz
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas         0 Mar 13 00:02 boinc_lockfile
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas      2565 Mar 14 02:28 pandaJob.out
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas        57 Mar 14 02:28 setup.sh.local
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas   1004579 Mar 14 02:28 agis_schedconf.cvmfs.json
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas       439 Mar 14 02:28 workernode_map.json
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas 182644833 Mar 14 09:29 HITS.48955006._049013.pool.root.1
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas       531 Mar 14 09:30 boinc_task_state.xml
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas      6658 Mar 14 09:30 init_data.xml
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas      1053 Mar 14 09:30 memory_monitor_summary.json
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas   1511579 Mar 14 09:30 agis_ddmendpoints.agis.ALL.json
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas    651411 Mar 14 09:30 log.48955006._049013.job.log.tgz.1
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas      6409 Mar 14 09:31 heartbeat.json
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas        97 Mar 14 09:31 pilot_heartbeat.json
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas      4892 Mar 14 09:31 pilotlog.txt
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas   2764569 Mar 14 09:31 log.48955006._049013.job.log.1
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas      8192 Mar 14 09:31 boinc_mmap_file
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas        28 Mar 14 09:31 wrapper_checkpoint.txt
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas       357 Mar 14 09:31 output.list
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas       620 Mar 14 09:31 runtime_log
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas   3430400 Mar 14 09:31 result.tar.gz
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas      9414 Mar 14 09:31 runtime_log.err
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas       786 Mar 14 09:31 ffcMDm8Y3K9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm9wnLDmADYINm.diag
[2026-03-14 09:31:38] -rw-r--r--. 1 boincer umatlas     23475 Mar 14 09:31 stderr.txt
[2026-03-14 09:31:38] HITS file was successfully produced:
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas 182644833 Mar 14 09:29 shared/HITS.pool.root.1
[2026-03-14 09:31:38]  *** Contents of shared directory: ***
[2026-03-14 09:31:38] total 611936
[2026-03-14 09:31:38] -rw-r--r--. 3 boincer umatlas 439915304 Mar 13 00:02 ATLAS.root_0
[2026-03-14 09:31:38] -rw-r--r--. 2 boincer umatlas     15845 Mar 13 00:02 start_atlas.sh
[2026-03-14 09:31:38] -rw-r--r--. 2 boincer umatlas    597531 Mar 13 00:02 input.tar.gz
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas 182644833 Mar 14 09:29 HITS.pool.root.1
[2026-03-14 09:31:38] -rw-------. 1 boincer umatlas   3430400 Mar 14 09:31 result.tar.gz
09:31:40 (1397637): run_atlas exited; CPU time 46772.337247
09:31:40 (1397637): called boinc_finish(0)

</stderr_txt>
]]>

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