Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:45:33 (12521): wrapper (7.7.26015): starting
12:45:33 (12521): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 12:45:33] Arguments: --nthreads 8
[2026-03-13 12:45:33] Threads: 8
[2026-03-13 12:45:33] Checking for CVMFS
[2026-03-13 12:45:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 12:45:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 12:45:37] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 12:45:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 12:45:38] 2.11.2.0 28634 126092 104928 157238 0 53 16626931 25165824 4784 130560 153 42168029 99.822 31294465 1015 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 12:45:38] CVMFS is ok
[2026-03-13 12:45:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 12:45:38] Checking for apptainer binary...
[2026-03-13 12:45:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 12:45:38] Running /usr/bin/apptainer --version
[2026-03-13 12:45:38] apptainer version 1.3.2-1.el7
[2026-03-13 12:45:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 12:45:47] cg-vwn465.simple-grid.lan
[2026-03-13 12:45:47] apptainer works
[2026-03-13 12:45:47] Set ATHENA_PROC_NUMBER=8
[2026-03-13 12:45:47] Set ATHENA_CORE_NUMBER=8
[2026-03-13 12:45:47] Starting ATLAS job with PandaID=7043304906
[2026-03-13 12:45:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 16:23:41]  *** The last 200 lines of the pilot log: ***
[2026-03-13 16:23:41] 2026-03-13 15:22:35,694 | INFO     | total number of processed events: 400 (read)
[2026-03-13 16:23:41] 2026-03-13 15:22:35,696 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7043304906/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 16:23:41] 2026-03-13 15:22:35,697 | INFO     | extracted standard info from prmon json
[2026-03-13 16:23:41] 2026-03-13 15:22:35,697 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 16:23:41] 2026-03-13 15:22:35,697 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 16:23:41] 2026-03-13 15:22:35,698 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 16:23:41] 2026-03-13 15:22:35,698 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 16:23:41] 2026-03-13 15:22:35,701 | INFO     | fitting pss+swap vs Time
[2026-03-13 16:23:41] 2026-03-13 15:22:35,702 | INFO     | sum of square deviations: 2632440055.0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,703 | INFO     | sum of deviations: 76417383511.99997
[2026-03-13 16:23:41] 2026-03-13 15:22:35,704 | INFO     | mean x: 1773409114.5
[2026-03-13 16:23:41] 2026-03-13 15:22:35,704 | INFO     | mean y: 2412599.8529411764
[2026-03-13 16:23:41] 2026-03-13 15:22:35,704 | INFO     | intersect: -51478069992.34145
[2026-03-13 16:23:41] 2026-03-13 15:22:35,704 | INFO     | chi2: 5.487516043297474
[2026-03-13 16:23:41] 2026-03-13 15:22:35,705 | INFO     | sum of square deviations: 2443580700.0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,706 | INFO     | sum of deviations: 87686786117.00002
[2026-03-13 16:23:41] 2026-03-13 15:22:35,707 | INFO     | mean x: 1773408962.0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,707 | INFO     | mean y: 2421483.673366834
[2026-03-13 16:23:41] 2026-03-13 15:22:35,707 | INFO     | intersect: -63635555501.84833
[2026-03-13 16:23:41] 2026-03-13 15:22:35,707 | INFO     | chi2: 4.75625494955188
[2026-03-13 16:23:41] 2026-03-13 15:22:35,707 | INFO     | current chi2=4.75625494955188 (change=13.325903523120747 %)
[2026-03-13 16:23:41] 2026-03-13 15:22:35,707 | INFO     | right removable region: 198
[2026-03-13 16:23:41] 2026-03-13 15:22:35,708 | INFO     | sum of square deviations: 2443580700.0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,709 | INFO     | sum of deviations: 10296639752.999994
[2026-03-13 16:23:41] 2026-03-13 15:22:35,709 | INFO     | mean x: 1773409267.0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,709 | INFO     | mean y: 2465919.608040201
[2026-03-13 16:23:41] 2026-03-13 15:22:35,710 | INFO     | intersect: -7470238524.706314
[2026-03-13 16:23:41] 2026-03-13 15:22:35,710 | INFO     | chi2: 1.2757162278154208
[2026-03-13 16:23:41] 2026-03-13 15:22:35,710 | INFO     | current chi2=1.2757162278154208 (change=76.75239183357655 %)
[2026-03-13 16:23:41] 2026-03-13 15:22:35,710 | INFO     | sum of square deviations: 2263977332.5
[2026-03-13 16:23:41] 2026-03-13 15:22:35,715 | INFO     | sum of deviations: -6711367528.500001
[2026-03-13 16:23:41] 2026-03-13 15:22:35,715 | INFO     | mean x: 1773409419.5
[2026-03-13 16:23:41] 2026-03-13 15:22:35,715 | INFO     | mean y: 2480183.3659793814
[2026-03-13 16:23:41] 2026-03-13 15:22:35,715 | INFO     | intersect: 5259601013.116308
[2026-03-13 16:23:41] 2026-03-13 15:22:35,716 | INFO     | chi2: 0.7966302593776414
[2026-03-13 16:23:41] 2026-03-13 15:22:35,716 | INFO     | current chi2=0.7966302593776414 (change=37.55427406126065 %)
[2026-03-13 16:23:41] 2026-03-13 15:22:35,716 | INFO     | sum of square deviations: 2093397390.0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,718 | INFO     | sum of deviations: -7851747552.999999
[2026-03-13 16:23:41] 2026-03-13 15:22:35,718 | INFO     | mean x: 1773409572.0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,718 | INFO     | mean y: 2481194.1322751325
[2026-03-13 16:23:41] 2026-03-13 15:22:35,718 | INFO     | intersect: 6654044023.976912
[2026-03-13 16:23:41] 2026-03-13 15:22:35,719 | INFO     | chi2: 0.7952198942909833
[2026-03-13 16:23:41] 2026-03-13 15:22:35,719 | INFO     | current chi2=0.7952198942909833 (change=0.17704136518238484 %)
[2026-03-13 16:23:41] 2026-03-13 15:22:35,719 | INFO     | left removable region: 30
[2026-03-13 16:23:41] 2026-03-13 15:22:35,719 | INFO     | sum of square deviations: 1470248962.0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,720 | INFO     | sum of deviations: 2781787239.5
[2026-03-13 16:23:41] 2026-03-13 15:22:35,720 | INFO     | mean x: 1773409846.5
[2026-03-13 16:23:41] 2026-03-13 15:22:35,721 | INFO     | mean y: 2494508.6726190476
[2026-03-13 16:23:41] 2026-03-13 15:22:35,721 | INFO     | intersect: -3352888837.2109156
[2026-03-13 16:23:41] 2026-03-13 15:22:35,721 | INFO     | chi2: 0.0005019765165834932
[2026-03-13 16:23:41] 2026-03-13 15:22:35,721 | INFO     | current memory leak: 1.89 B/s (using 168 data points, chi2=0.00)
[2026-03-13 16:23:41] 2026-03-13 15:22:35,722 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2026-03-13 16:23:41] 2026-03-13 15:22:35,722 | INFO     | ..............................
[2026-03-13 16:23:41] 2026-03-13 15:22:35,722 | INFO     | . Timing measurements:
[2026-03-13 16:23:41] 2026-03-13 15:22:35,722 | INFO     | . get job = 0 s
[2026-03-13 16:23:41] 2026-03-13 15:22:35,722 | INFO     | . initial setup = 95 s
[2026-03-13 16:23:41] 2026-03-13 15:22:35,722 | INFO     | . payload setup = 138 s
[2026-03-13 16:23:41] 2026-03-13 15:22:35,722 | INFO     | . stage-in = 0 s
[2026-03-13 16:23:41] 2026-03-13 15:22:35,723 | INFO     | . payload execution = 12534 s
[2026-03-13 16:23:41] 2026-03-13 15:22:35,723 | INFO     | . stage-out = 3 s
[2026-03-13 16:23:41] 2026-03-13 15:22:35,723 | INFO     | . log creation = 1 s
[2026-03-13 16:23:41] 2026-03-13 15:22:35,723 | INFO     | ..............................
[2026-03-13 16:23:41] 2026-03-13 15:22:35,861 | INFO     | 
[2026-03-13 16:23:41] 2026-03-13 15:22:35,861 | INFO     | job summary report
[2026-03-13 16:23:41] 2026-03-13 15:22:35,861 | INFO     | --------------------------------------------------
[2026-03-13 16:23:41] 2026-03-13 15:22:35,861 | INFO     | PanDA job id: 7043304906
[2026-03-13 16:23:41] 2026-03-13 15:22:35,861 | INFO     | task id: 48955006
[2026-03-13 16:23:41] 2026-03-13 15:22:35,861 | INFO     | errors: (none)
[2026-03-13 16:23:41] 2026-03-13 15:22:35,861 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | pilot state: finished 
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | transexitcode: 0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | exeerrorcode: 0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | exeerrordiag: 
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | exitcode: 0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | exitmsg: OK
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | cpuconsumptiontime: 48224 s
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | nevents: 400
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | neventsw: 0
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | pid: 21396
[2026-03-13 16:23:41] 2026-03-13 15:22:35,862 | INFO     | pgrp: 21396
[2026-03-13 16:23:41] 2026-03-13 15:22:35,863 | INFO     | corecount: 8
[2026-03-13 16:23:41] 2026-03-13 15:22:35,863 | INFO     | event service: False
[2026-03-13 16:23:41] 2026-03-13 15:22:35,863 | INFO     | sizes: {0: 2279142, 1: 2279827, 2: 2280288, 12676: 2310154, 12679: 2319152, 12681: 2319208, 12685: 2319530}
[2026-03-13 16:23:41] 2026-03-13 15:22:35,863 | INFO     | --------------------------------------------------
[2026-03-13 16:23:41] 2026-03-13 15:22:35,863 | INFO     | 
[2026-03-13 16:23:41] 2026-03-13 15:22:35,863 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-03-13 16:23:41] 2026-03-13 15:22:36,493 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,493 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,493 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,494 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,494 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,495 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,495 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 16:23:41] 2026-03-13 15:22:36,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,495 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 16:23:41] 2026-03-13 15:22:36,495 | INFO     | job 7043304906 has completed (purged errors)
[2026-03-13 16:23:41] 2026-03-13 15:22:36,495 | INFO     | overall cleanup function is called
[2026-03-13 16:23:41] 2026-03-13 15:22:37,504 | INFO     | --- collectZombieJob: --- 10, [21396]
[2026-03-13 16:23:41] 2026-03-13 15:22:37,504 | INFO     | zombie collector waiting for pid 21396
[2026-03-13 16:23:41] 2026-03-13 15:22:37,504 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 16:23:41] 2026-03-13 15:22:37,504 | INFO     | collected zombie processes
[2026-03-13 16:23:41] 2026-03-13 15:22:37,504 | INFO     | will attempt to kill all subprocesses of pid=21396
[2026-03-13 16:23:41] 2026-03-13 15:22:37,640 | INFO     | process IDs to be killed: [21396] (in reverse order)
[2026-03-13 16:23:41] 2026-03-13 15:22:38,305 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 16:23:41] 2026-03-13 15:22:38,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 16:23:41] 2026-03-13 15:22:38,308 | INFO     | did not find any defunct processes belonging to 21396
[2026-03-13 16:23:41] 2026-03-13 15:22:38,310 | INFO     | did not find any defunct processes belonging to 21396
[2026-03-13 16:23:41] 2026-03-13 15:22:38,310 | INFO     | ready for new job
[2026-03-13 16:23:41] 2026-03-13 15:22:38,311 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 16:23:41] 2026-03-13 15:22:38,312 | INFO     | **************************************
[2026-03-13 16:23:41] 2026-03-13 15:22:38,313 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 16:23:41] 2026-03-13 15:22:38,313 | INFO     | **************************************
[2026-03-13 16:23:41] 2026-03-13 15:22:38,313 | INFO     | 
[2026-03-13 16:23:41] 2026-03-13 15:22:38,313 | INFO     | pilot is running in a VM
[2026-03-13 16:23:41] 2026-03-13 15:22:38,314 | INFO     | architecture information:
[2026-03-13 16:23:41] 2026-03-13 15:22:38,327 | INFO     | executing command: cat /etc/os-release
[2026-03-13 16:23:41] 2026-03-13 15:22:38,578 | INFO     | cat /etc/os-release:
[2026-03-13 16:23:41] NAME="CentOS Linux"
[2026-03-13 16:23:41] VERSION="7 (Core)"
[2026-03-13 16:23:41] ID="centos"
[2026-03-13 16:23:41] ID_LIKE="rhel fedora"
[2026-03-13 16:23:41] VERSION_ID="7"
[2026-03-13 16:23:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 16:23:41] ANSI_COLOR="0;31"
[2026-03-13 16:23:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 16:23:41] HOME_URL="https://www.centos.org/"
[2026-03-13 16:23:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 16:23:41] 
[2026-03-13 16:23:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 16:23:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 16:23:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 16:23:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 16:23:41] 
[2026-03-13 16:23:41] 2026-03-13 15:22:38,579 | INFO     | **************************************
[2026-03-13 16:23:41] 2026-03-13 15:22:39,086 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-03-13 16:23:41] 2026-03-13 15:22:39,341 | INFO     | sufficient remaining disk space (496240689152 B)
[2026-03-13 16:23:41] 2026-03-13 15:22:39,342 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 16:23:41] 2026-03-13 15:22:39,342 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 16:23:41] 2026-03-13 15:22:39,342 | INFO     | update_server=False
[2026-03-13 16:23:41] 2026-03-13 15:22:39,342 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 16:23:41] 2026-03-13 15:22:39,424 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-13 16:23:41] 2026-03-13 15:22:39,424 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-13 16:23:41] 2026-03-13 15:22:39,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 16:23:41] 2026-03-13 15:22:39,424 | INFO     | will abort loop
[2026-03-13 16:23:41] 2026-03-13 15:22:39,815 | INFO     | all job control threads have been joined
[2026-03-13 16:23:41] 2026-03-13 15:22:40,150 | INFO     | all payload control threads have been joined
[2026-03-13 16:23:41] 2026-03-13 15:22:40,241 | INFO     | all data control threads have been joined
[2026-03-13 16:23:41] 2026-03-13 15:22:40,348 | INFO     | [job] retrieve thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:40,430 | INFO     | [job] job monitor thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:40,548 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:40,702 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:40,781 | INFO     | [payload] failed_post thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:40,790 | INFO     | [payload] validate_post thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:40,821 | INFO     | [job] control thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:40,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 16:23:41] 2026-03-13 15:22:40,875 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 16:23:41] 2026-03-13 15:22:41,156 | INFO     | [payload] control thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:41,178 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:41,247 | INFO     | [data] control thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:41,297 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:41,568 | INFO     | [job] validate thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:41,830 | INFO     | [data] copytool_in thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:41,881 | INFO     | [job] queue monitor thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:42,502 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 16:23:41] 2026-03-13 15:22:42,832 | INFO     | [data] copytool_out thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:22:46,511 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 16:23:41] 2026-03-13 15:23:08,042 | INFO     | PID=16781 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 16:23:41] 2026-03-13 15:23:08,042 | INFO     | .. there are 9 such processes running
[2026-03-13 16:23:41] 2026-03-13 15:23:08,042 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 16:23:41] 2026-03-13 15:23:08,042 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 16:23:41] 2026-03-13 15:23:08,042 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 16:23:41] 2026-03-13 15:23:30,104 | INFO     | [monitor] cgroup control has ended
[2026-03-13 16:23:41] 2026-03-13 15:23:31,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668268934976)>', '<ExcThread(monitor, started 139667689166592)>']
[2026-03-13 16:23:41] 2026-03-13 15:23:32,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 16:23:41] 2026-03-13 15:23:32,186 | INFO     | [monitor] control thread has ended
[2026-03-13 16:23:41] 2026-03-13 15:23:36,343 | INFO     | all workflow threads have been joined
[2026-03-13 16:23:41] 2026-03-13 15:23:36,343 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 16:23:41] 2026-03-13 15:23:36,343 | INFO     | traces error code: 0
[2026-03-13 16:23:41] 2026-03-13 15:23:36,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 16:23:41] 2026-03-13 15:23:36,627 [wrapper] ==== pilot stdout END ====
[2026-03-13 16:23:41] 2026-03-13 15:23:36,665 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 16:23:41] 2026-03-13 15:23:36,708 [wrapper] pilotpid: 16781
[2026-03-13 16:23:41] 2026-03-13 15:23:36,772 [wrapper] Pilot exit status: 0
[2026-03-13 16:23:41] 2026-03-13 15:23:37,248 [wrapper] pandaids: 7043304906
[2026-03-13 16:23:41] 2026-03-13 15:23:38,061 [wrapper] cleanup supervisor_pilot 29028 16782
[2026-03-13 16:23:41] 2026-03-13 15:23:38,159 [wrapper] Test setup, not cleaning
[2026-03-13 16:23:41] 2026-03-13 15:23:38,277 [wrapper] apfmon messages muted
[2026-03-13 16:23:41] 2026-03-13 15:23:38,334 [wrapper] ==== wrapper stdout END ====
[2026-03-13 16:23:41] 2026-03-13 15:23:38,429 [wrapper] ==== wrapper stderr END ====
[2026-03-13 16:23:41]  *** Error codes and diagnostics ***
[2026-03-13 16:23:41]     "exeErrorCode": 0,
[2026-03-13 16:23:41]     "exeErrorDiag": "",
[2026-03-13 16:23:41]     "pilotErrorCode": 0,
[2026-03-13 16:23:41]     "pilotErrorDiag": "",
[2026-03-13 16:23:41]  *** Listing of results directory ***
[2026-03-13 16:23:41] total 614584
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc    585013 Mar 12 17:09 pilot3.tar.gz
[2026-03-13 16:23:41] -rwx------. 1 boinc boinc     36322 Mar 12 17:10 runpilot2-wrapper.sh
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc      5111 Mar 12 17:10 queuedata.json
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc       100 Mar 13 12:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 16:23:41] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 12:45 run_atlas
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc       105 Mar 13 12:45 job.xml
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc      6391 Mar 13 12:45 init_data.xml
[2026-03-13 16:23:41] -rw-r--r--. 2 boinc boinc 439954312 Mar 13 12:45 EVNT.46701403._000915.pool.root.1
[2026-03-13 16:23:41] -rw-r--r--. 2 boinc boinc     15845 Mar 13 12:45 start_atlas.sh
[2026-03-13 16:23:41] drwxrwx--x. 2 boinc boinc        68 Mar 13 12:45 shared
[2026-03-13 16:23:41] -rw-r--r--. 2 boinc boinc    597527 Mar 13 12:45 input.tar.gz
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc         0 Mar 13 12:45 boinc_lockfile
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc      2565 Mar 13 12:45 pandaJob.out
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc       413 Mar 13 12:51 workernode_map.json
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc   1006495 Mar 13 12:51 agis_schedconf.cvmfs.json
[2026-03-13 16:23:41] drwx------. 5 boinc boinc      4096 Mar 13 12:51 pilot3
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc 180948345 Mar 13 16:21 HITS.48955006._046225.pool.root.1
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc       531 Mar 13 16:21 boinc_task_state.xml
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc        95 Mar 13 16:22 pilot_heartbeat.json
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc      1013 Mar 13 16:22 memory_monitor_summary.json
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc   1511578 Mar 13 16:22 agis_ddmendpoints.agis.ALL.json
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc    472855 Mar 13 16:22 log.48955006._046225.job.log.tgz.1
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc      6316 Mar 13 16:22 heartbeat.json
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc      8192 Mar 13 16:23 boinc_mmap_file
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc        28 Mar 13 16:23 wrapper_checkpoint.txt
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc      5066 Mar 13 16:23 pilotlog.txt
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc   1782791 Mar 13 16:23 log.48955006._046225.job.log.1
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc       357 Mar 13 16:23 output.list
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc       620 Mar 13 16:23 runtime_log
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc   2273280 Mar 13 16:23 result.tar.gz
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc      8816 Mar 13 16:23 runtime_log.err
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc       654 Mar 13 16:23 65oNDmFnxK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmgDnLDmXNSFgn.diag
[2026-03-13 16:23:41] -rw-r--r--. 1 boinc boinc     20716 Mar 13 16:23 stderr.txt
[2026-03-13 16:23:41] HITS file was successfully produced:
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc 180948345 Mar 13 16:21 shared/HITS.pool.root.1
[2026-03-13 16:23:41]  *** Contents of shared directory: ***
[2026-03-13 16:23:41] total 609172
[2026-03-13 16:23:41] -rw-r--r--. 2 boinc boinc 439954312 Mar 13 12:45 ATLAS.root_0
[2026-03-13 16:23:41] -rw-r--r--. 2 boinc boinc     15845 Mar 13 12:45 start_atlas.sh
[2026-03-13 16:23:41] -rw-r--r--. 2 boinc boinc    597527 Mar 13 12:45 input.tar.gz
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc 180948345 Mar 13 16:21 HITS.pool.root.1
[2026-03-13 16:23:41] -rw-------. 1 boinc boinc   2273280 Mar 13 16:23 result.tar.gz
16:23:42 (12521): run_atlas exited; CPU time 48406.078028
16:23:42 (12521): called boinc_finish(0)

</stderr_txt>
]]>

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