Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:39:22 (29079): wrapper (7.7.26015): starting
08:39:22 (29079): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 08:39:22] Arguments: --nthreads 8
[2026-03-13 08:39:22] Threads: 8
[2026-03-13 08:39:22] Checking for CVMFS
[2026-03-13 08:39:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 08:39:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 08:39:25] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 08:39:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 08:39:26] 2.11.2.0 7648 125828 138816 157232 2 54 23483007 25165825 4834 130560 157 42285674 99.843 25931982 883 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 08:39:26] CVMFS is ok
[2026-03-13 08:39:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 08:39:26] Checking for apptainer binary...
[2026-03-13 08:39:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 08:39:26] Running /usr/bin/apptainer --version
[2026-03-13 08:39:26] apptainer version 1.3.2-1.el7
[2026-03-13 08:39:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 08:39:58] cg-vwn480.simple-grid.lan
[2026-03-13 08:39:58] apptainer works
[2026-03-13 08:39:58] Set ATHENA_PROC_NUMBER=8
[2026-03-13 08:39:58] Set ATHENA_CORE_NUMBER=8
[2026-03-13 08:39:58] Starting ATLAS job with PandaID=7043304951
[2026-03-13 08:39:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 12:21:42]  *** The last 200 lines of the pilot log: ***
[2026-03-13 12:21:42] 2026-03-13 11:20:35,799 | INFO     | total number of processed events: 400 (read)
[2026-03-13 12:21:42] 2026-03-13 11:20:35,801 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-7043304951/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 12:21:42] 2026-03-13 11:20:35,802 | INFO     | extracted standard info from prmon json
[2026-03-13 12:21:42] 2026-03-13 11:20:35,802 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 12:21:42] 2026-03-13 11:20:35,802 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 12:21:42] 2026-03-13 11:20:35,802 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 12:21:42] 2026-03-13 11:20:35,802 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 12:21:42] 2026-03-13 11:20:35,806 | INFO     | fitting pss+swap vs Time
[2026-03-13 12:21:42] 2026-03-13 11:20:35,807 | INFO     | sum of square deviations: 2790348132.0
[2026-03-13 12:21:42] 2026-03-13 11:20:35,808 | INFO     | sum of deviations: 54487099661.99999
[2026-03-13 12:21:42] 2026-03-13 11:20:35,808 | INFO     | mean x: 1773394487.5
[2026-03-13 12:21:42] 2026-03-13 11:20:35,809 | INFO     | mean y: 2432741.076923077
[2026-03-13 12:21:42] 2026-03-13 11:20:35,809 | INFO     | intersect: -34626623423.0354
[2026-03-13 12:21:42] 2026-03-13 11:20:35,809 | INFO     | chi2: 5.884626699276957
[2026-03-13 12:21:42] 2026-03-13 11:20:35,810 | INFO     | sum of square deviations: 2593916542.0
[2026-03-13 12:21:42] 2026-03-13 11:20:35,811 | INFO     | sum of deviations: 66720478129.999985
[2026-03-13 12:21:42] 2026-03-13 11:20:35,811 | INFO     | mean x: 1773394335.0
[2026-03-13 12:21:42] 2026-03-13 11:20:35,811 | INFO     | mean y: 2442031.3251231527
[2026-03-13 12:21:42] 2026-03-13 11:20:35,811 | INFO     | intersect: -45612640809.00527
[2026-03-13 12:21:42] 2026-03-13 11:20:35,812 | INFO     | chi2: 5.1707555978600865
[2026-03-13 12:21:42] 2026-03-13 11:20:35,812 | INFO     | current chi2=5.1707555978600865 (change=12.13111957474862 %)
[2026-03-13 12:21:42] 2026-03-13 11:20:35,812 | INFO     | right removable region: 202
[2026-03-13 12:21:42] 2026-03-13 11:20:35,812 | INFO     | sum of square deviations: 2593916542.0
[2026-03-13 12:21:42] 2026-03-13 11:20:35,814 | INFO     | sum of deviations: -14937790409.999985
[2026-03-13 12:21:42] 2026-03-13 11:20:35,814 | INFO     | mean x: 1773394640.0
[2026-03-13 12:21:42] 2026-03-13 11:20:35,814 | INFO     | mean y: 2486570.369458128
[2026-03-13 12:21:42] 2026-03-13 11:20:35,814 | INFO     | intersect: 10215073219.788872
[2026-03-13 12:21:42] 2026-03-13 11:20:35,815 | INFO     | chi2: 1.4103666154738257
[2026-03-13 12:21:42] 2026-03-13 11:20:35,815 | INFO     | current chi2=1.4103666154738257 (change=76.03303170195797 %)
[2026-03-13 12:21:42] 2026-03-13 11:20:35,815 | INFO     | sum of square deviations: 2406926989.5
[2026-03-13 12:21:42] 2026-03-13 11:20:35,817 | INFO     | sum of deviations: -31489654514.5
[2026-03-13 12:21:42] 2026-03-13 11:20:35,817 | INFO     | mean x: 1773394792.5
[2026-03-13 12:21:42] 2026-03-13 11:20:35,817 | INFO     | mean y: 2499906.106060606
[2026-03-13 12:21:42] 2026-03-13 11:20:35,817 | INFO     | intersect: 23203697772.61842
[2026-03-13 12:21:42] 2026-03-13 11:20:35,817 | INFO     | chi2: 0.923217245601213
[2026-03-13 12:21:42] 2026-03-13 11:20:35,817 | INFO     | current chi2=0.923217245601213 (change=34.54061975998704 %)
[2026-03-13 12:21:42] 2026-03-13 11:20:35,818 | INFO     | sum of square deviations: 2229146912.0
[2026-03-13 12:21:42] 2026-03-13 11:20:35,819 | INFO     | sum of deviations: -26960573271.0
[2026-03-13 12:21:42] 2026-03-13 11:20:35,819 | INFO     | mean x: 1773394945.0
[2026-03-13 12:21:42] 2026-03-13 11:20:35,819 | INFO     | mean y: 2495987.2901554406
[2026-03-13 12:21:42] 2026-03-13 11:20:35,820 | INFO     | intersect: 21450945210.493942
[2026-03-13 12:21:42] 2026-03-13 11:20:35,820 | INFO     | chi2: 0.9064544569658759
[2026-03-13 12:21:42] 2026-03-13 11:20:35,820 | INFO     | current chi2=0.9064544569658759 (change=1.8156927543550065 %)
[2026-03-13 12:21:42] 2026-03-13 11:20:35,820 | INFO     | left removable region: 30
[2026-03-13 12:21:42] 2026-03-13 11:20:35,820 | INFO     | sum of square deviations: 1577789583.0
[2026-03-13 12:21:42] 2026-03-13 11:20:35,821 | INFO     | sum of deviations: 4054627544.0
[2026-03-13 12:21:42] 2026-03-13 11:20:35,822 | INFO     | mean x: 1773395219.5
[2026-03-13 12:21:42] 2026-03-13 11:20:35,822 | INFO     | mean y: 2489989.406976744
[2026-03-13 12:21:42] 2026-03-13 11:20:35,822 | INFO     | intersect: -4554807878.988587
[2026-03-13 12:21:42] 2026-03-13 11:20:35,822 | INFO     | chi2: 0.0004476303818245366
[2026-03-13 12:21:42] 2026-03-13 11:20:35,822 | INFO     | current memory leak: 2.57 B/s (using 172 data points, chi2=0.00)
[2026-03-13 12:21:42] 2026-03-13 11:20:35,823 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-03-13 12:21:42] 2026-03-13 11:20:35,823 | INFO     | ..............................
[2026-03-13 12:21:42] 2026-03-13 11:20:35,823 | INFO     | . Timing measurements:
[2026-03-13 12:21:42] 2026-03-13 11:20:35,823 | INFO     | . get job = 0 s
[2026-03-13 12:21:42] 2026-03-13 11:20:35,823 | INFO     | . initial setup = 98 s
[2026-03-13 12:21:42] 2026-03-13 11:20:35,823 | INFO     | . payload setup = 130 s
[2026-03-13 12:21:42] 2026-03-13 11:20:35,824 | INFO     | . stage-in = 0 s
[2026-03-13 12:21:42] 2026-03-13 11:20:35,824 | INFO     | . payload execution = 12769 s
[2026-03-13 12:21:42] 2026-03-13 11:20:35,824 | INFO     | . stage-out = 3 s
[2026-03-13 12:21:42] 2026-03-13 11:20:35,824 | INFO     | . log creation = 1 s
[2026-03-13 12:21:42] 2026-03-13 11:20:35,824 | INFO     | ..............................
[2026-03-13 12:21:42] 2026-03-13 11:20:36,226 | INFO     | 
[2026-03-13 12:21:42] 2026-03-13 11:20:36,226 | INFO     | job summary report
[2026-03-13 12:21:42] 2026-03-13 11:20:36,226 | INFO     | --------------------------------------------------
[2026-03-13 12:21:42] 2026-03-13 11:20:36,226 | INFO     | PanDA job id: 7043304951
[2026-03-13 12:21:42] 2026-03-13 11:20:36,226 | INFO     | task id: 48955006
[2026-03-13 12:21:42] 2026-03-13 11:20:36,226 | INFO     | errors: (none)
[2026-03-13 12:21:42] 2026-03-13 11:20:36,226 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 12:21:42] 2026-03-13 11:20:36,226 | INFO     | pilot state: finished 
[2026-03-13 12:21:42] 2026-03-13 11:20:36,227 | INFO     | transexitcode: 0
[2026-03-13 12:21:42] 2026-03-13 11:20:36,227 | INFO     | exeerrorcode: 0
[2026-03-13 12:21:42] 2026-03-13 11:20:36,227 | INFO     | exeerrordiag: 
[2026-03-13 12:21:42] 2026-03-13 11:20:36,227 | INFO     | exitcode: 0
[2026-03-13 12:21:42] 2026-03-13 11:20:36,227 | INFO     | exitmsg: OK
[2026-03-13 12:21:42] 2026-03-13 11:20:36,227 | INFO     | cpuconsumptiontime: 49253 s
[2026-03-13 12:21:42] 2026-03-13 11:20:36,227 | INFO     | nevents: 400
[2026-03-13 12:21:42] 2026-03-13 11:20:36,227 | INFO     | neventsw: 0
[2026-03-13 12:21:42] 2026-03-13 11:20:36,227 | INFO     | pid: 5236
[2026-03-13 12:21:42] 2026-03-13 11:20:36,228 | INFO     | pgrp: 5236
[2026-03-13 12:21:42] 2026-03-13 11:20:36,228 | INFO     | corecount: 8
[2026-03-13 12:21:42] 2026-03-13 11:20:36,228 | INFO     | event service: False
[2026-03-13 12:21:42] 2026-03-13 11:20:36,228 | INFO     | sizes: {0: 2279744, 1: 2280201, 2: 2280289, 12: 2280289, 12903: 2310347, 12908: 2319347, 12911: 2319531, 12913: 2319725}
[2026-03-13 12:21:42] 2026-03-13 11:20:36,228 | INFO     | --------------------------------------------------
[2026-03-13 12:21:42] 2026-03-13 11:20:36,228 | INFO     | 
[2026-03-13 12:21:42] 2026-03-13 11:20:36,228 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-03-13 12:21:42] 2026-03-13 11:20:36,479 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,480 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,480 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,480 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,480 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,480 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,480 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,480 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,481 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,481 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,481 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,481 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,481 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,481 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,481 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,481 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,482 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,482 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 12:21:42] 2026-03-13 11:20:36,482 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,482 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 12:21:42] 2026-03-13 11:20:36,482 | INFO     | job 7043304951 has completed (purged errors)
[2026-03-13 12:21:42] 2026-03-13 11:20:36,482 | INFO     | overall cleanup function is called
[2026-03-13 12:21:42] 2026-03-13 11:20:37,490 | INFO     | --- collectZombieJob: --- 10, [5236]
[2026-03-13 12:21:42] 2026-03-13 11:20:37,491 | INFO     | zombie collector waiting for pid 5236
[2026-03-13 12:21:42] 2026-03-13 11:20:37,491 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 12:21:42] 2026-03-13 11:20:37,491 | INFO     | collected zombie processes
[2026-03-13 12:21:42] 2026-03-13 11:20:37,491 | INFO     | will attempt to kill all subprocesses of pid=5236
[2026-03-13 12:21:42] 2026-03-13 11:20:37,599 | INFO     | process IDs to be killed: [5236] (in reverse order)
[2026-03-13 12:21:42] 2026-03-13 11:20:38,323 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 12:21:42] 2026-03-13 11:20:38,324 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 12:21:42] 2026-03-13 11:20:38,327 | INFO     | did not find any defunct processes belonging to 5236
[2026-03-13 12:21:42] 2026-03-13 11:20:38,329 | INFO     | did not find any defunct processes belonging to 5236
[2026-03-13 12:21:42] 2026-03-13 11:20:38,329 | INFO     | ready for new job
[2026-03-13 12:21:42] 2026-03-13 11:20:38,329 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 12:21:42] 2026-03-13 11:20:38,331 | INFO     | **************************************
[2026-03-13 12:21:42] 2026-03-13 11:20:38,331 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 12:21:42] 2026-03-13 11:20:38,331 | INFO     | **************************************
[2026-03-13 12:21:42] 2026-03-13 11:20:38,332 | INFO     | 
[2026-03-13 12:21:42] 2026-03-13 11:20:38,332 | INFO     | pilot is running in a VM
[2026-03-13 12:21:42] 2026-03-13 11:20:38,332 | INFO     | architecture information:
[2026-03-13 12:21:42] 2026-03-13 11:20:38,340 | INFO     | executing command: cat /etc/os-release
[2026-03-13 12:21:42] 2026-03-13 11:20:38,561 | INFO     | cat /etc/os-release:
[2026-03-13 12:21:42] NAME="CentOS Linux"
[2026-03-13 12:21:42] VERSION="7 (Core)"
[2026-03-13 12:21:42] ID="centos"
[2026-03-13 12:21:42] ID_LIKE="rhel fedora"
[2026-03-13 12:21:42] VERSION_ID="7"
[2026-03-13 12:21:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 12:21:42] ANSI_COLOR="0;31"
[2026-03-13 12:21:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 12:21:42] HOME_URL="https://www.centos.org/"
[2026-03-13 12:21:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 12:21:42] 
[2026-03-13 12:21:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 12:21:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 12:21:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 12:21:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 12:21:42] 
[2026-03-13 12:21:42] 2026-03-13 11:20:38,562 | INFO     | **************************************
[2026-03-13 12:21:42] 2026-03-13 11:20:39,065 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-03-13 12:21:42] 2026-03-13 11:20:39,281 | INFO     | sufficient remaining disk space (495439577088 B)
[2026-03-13 12:21:42] 2026-03-13 11:20:39,281 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 12:21:42] 2026-03-13 11:20:39,282 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 12:21:42] 2026-03-13 11:20:39,282 | INFO     | update_server=False
[2026-03-13 12:21:42] 2026-03-13 11:20:39,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 12:21:42] 2026-03-13 11:20:39,308 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-13 12:21:42] 2026-03-13 11:20:39,309 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-13 12:21:42] 2026-03-13 11:20:39,309 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 12:21:42] 2026-03-13 11:20:39,309 | INFO     | will abort loop
[2026-03-13 12:21:42] 2026-03-13 11:20:39,401 | INFO     | all data control threads have been joined
[2026-03-13 12:21:42] 2026-03-13 11:20:39,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 12:21:42] 2026-03-13 11:20:40,028 | INFO     | all payload control threads have been joined
[2026-03-13 12:21:42] 2026-03-13 11:20:40,288 | INFO     | [job] retrieve thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:40,306 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:40,315 | INFO     | [job] job monitor thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:40,407 | INFO     | [data] control thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:40,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 12:21:42] 2026-03-13 11:20:40,540 | INFO     | all job control threads have been joined
[2026-03-13 12:21:42] 2026-03-13 11:20:40,796 | INFO     | [payload] validate_post thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:40,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 12:21:42] 2026-03-13 11:20:40,958 | INFO     | [data] copytool_in thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:40,958 | INFO     | [job] validate thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:40,966 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:40,994 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:41,035 | INFO     | [payload] control thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:41,260 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:41,450 | INFO     | [data] copytool_out thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:41,547 | INFO     | [job] control thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:41,839 | INFO     | [payload] failed_post thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:41,960 | INFO     | [job] queue monitor thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:20:44,454 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 12:21:42] 2026-03-13 11:21:08,608 | INFO     | PID=761 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-03-13 12:21:42] 2026-03-13 11:21:08,608 | INFO     | .. there are 9 such processes running
[2026-03-13 12:21:42] 2026-03-13 11:21:08,609 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 12:21:42] 2026-03-13 11:21:08,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 12:21:42] 2026-03-13 11:21:08,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 12:21:42] 2026-03-13 11:21:32,673 | INFO     | [monitor] cgroup control has ended
[2026-03-13 12:21:42] 2026-03-13 11:21:34,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139785547020096)>', '<ExcThread(monitor, started 139785238718208)>']
[2026-03-13 12:21:42] 2026-03-13 11:21:34,765 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 12:21:42] 2026-03-13 11:21:34,766 | INFO     | [monitor] control thread has ended
[2026-03-13 12:21:42] 2026-03-13 11:21:39,265 | INFO     | all workflow threads have been joined
[2026-03-13 12:21:42] 2026-03-13 11:21:39,265 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 12:21:42] 2026-03-13 11:21:39,265 | INFO     | traces error code: 0
[2026-03-13 12:21:42] 2026-03-13 11:21:39,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 12:21:42] 2026-03-13 11:21:39,579 [wrapper] ==== pilot stdout END ====
[2026-03-13 12:21:42] 2026-03-13 11:21:39,644 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 12:21:42] 2026-03-13 11:21:39,665 [wrapper] pilotpid: 761
[2026-03-13 12:21:42] 2026-03-13 11:21:39,725 [wrapper] Pilot exit status: 0
[2026-03-13 12:21:42] 2026-03-13 11:21:39,966 [wrapper] pandaids: 7043304951
[2026-03-13 12:21:42] 2026-03-13 11:21:40,311 [wrapper] cleanup supervisor_pilot 12694 762
[2026-03-13 12:21:42] 2026-03-13 11:21:40,398 [wrapper] Test setup, not cleaning
[2026-03-13 12:21:42] 2026-03-13 11:21:40,505 [wrapper] apfmon messages muted
[2026-03-13 12:21:42] 2026-03-13 11:21:40,580 [wrapper] ==== wrapper stdout END ====
[2026-03-13 12:21:42] 2026-03-13 11:21:40,644 [wrapper] ==== wrapper stderr END ====
[2026-03-13 12:21:42]  *** Error codes and diagnostics ***
[2026-03-13 12:21:42]     "exeErrorCode": 0,
[2026-03-13 12:21:42]     "exeErrorDiag": "",
[2026-03-13 12:21:42]     "pilotErrorCode": 0,
[2026-03-13 12:21:42]     "pilotErrorDiag": "",
[2026-03-13 12:21:42]  *** Listing of results directory ***
[2026-03-13 12:21:42] total 620692
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc    585013 Mar 12 17:09 pilot3.tar.gz
[2026-03-13 12:21:42] -rwx------. 1 boinc boinc     36322 Mar 12 17:10 runpilot2-wrapper.sh
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc      5111 Mar 12 17:10 queuedata.json
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc       100 Mar 13 08:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 12:21:42] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 08:39 run_atlas
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc       105 Mar 13 08:39 job.xml
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc      6392 Mar 13 08:39 init_data.xml
[2026-03-13 12:21:42] -rw-r--r--. 2 boinc boinc 443366063 Mar 13 08:39 EVNT.46701403._000916.pool.root.1
[2026-03-13 12:21:42] -rw-r--r--. 2 boinc boinc     15845 Mar 13 08:39 start_atlas.sh
[2026-03-13 12:21:42] drwxrwx--x. 2 boinc boinc        68 Mar 13 08:39 shared
[2026-03-13 12:21:42] -rw-r--r--. 2 boinc boinc    597524 Mar 13 08:39 input.tar.gz
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc         0 Mar 13 08:39 boinc_lockfile
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc      2565 Mar 13 08:39 pandaJob.out
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc       415 Mar 13 08:45 workernode_map.json
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc   1006506 Mar 13 08:45 agis_schedconf.cvmfs.json
[2026-03-13 12:21:42] drwx------. 5 boinc boinc      4096 Mar 13 08:45 pilot3
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc 183732745 Mar 13 12:19 HITS.48955006._046270.pool.root.1
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc       531 Mar 13 12:19 boinc_task_state.xml
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc        95 Mar 13 12:20 pilot_heartbeat.json
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc      1013 Mar 13 12:20 memory_monitor_summary.json
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc   1511578 Mar 13 12:20 agis_ddmendpoints.agis.ALL.json
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc    471425 Mar 13 12:20 log.48955006._046270.job.log.tgz.1
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc      6320 Mar 13 12:20 heartbeat.json
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc      8192 Mar 13 12:21 boinc_mmap_file
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc        28 Mar 13 12:21 wrapper_checkpoint.txt
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc      5065 Mar 13 12:21 pilotlog.txt
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc   1810168 Mar 13 12:21 log.48955006._046270.job.log.1
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc       357 Mar 13 12:21 output.list
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc       620 Mar 13 12:21 runtime_log
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc   2304000 Mar 13 12:21 result.tar.gz
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc      8832 Mar 13 12:21 runtime_log.err
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc       654 Mar 13 12:21 1TqLDmInxK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmzDnLDmj5rhtn.diag
[2026-03-13 12:21:42] -rw-r--r--. 1 boinc boinc     20710 Mar 13 12:21 stderr.txt
[2026-03-13 12:21:42] HITS file was successfully produced:
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc 183732745 Mar 13 12:19 shared/HITS.pool.root.1
[2026-03-13 12:21:42]  *** Contents of shared directory: ***
[2026-03-13 12:21:42] total 615256
[2026-03-13 12:21:42] -rw-r--r--. 2 boinc boinc 443366063 Mar 13 08:39 ATLAS.root_0
[2026-03-13 12:21:42] -rw-r--r--. 2 boinc boinc     15845 Mar 13 08:39 start_atlas.sh
[2026-03-13 12:21:42] -rw-r--r--. 2 boinc boinc    597524 Mar 13 08:39 input.tar.gz
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc 183732745 Mar 13 12:19 HITS.pool.root.1
[2026-03-13 12:21:42] -rw-------. 1 boinc boinc   2304000 Mar 13 12:21 result.tar.gz
12:21:43 (29079): run_atlas exited; CPU time 49442.442720
12:21:43 (29079): called boinc_finish(0)

</stderr_txt>
]]>

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