Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:43:24 (171439): wrapper (7.7.26015): starting
09:43:24 (171439): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 09:43:24] Arguments: --nthreads 4
[2026-03-14 09:43:24] Threads: 4
[2026-03-14 09:43:24] Checking for CVMFS
[2026-03-14 09:43:24] No cvmfs_config command found, will try listing directly
[2026-03-14 09:43:24] CVMFS is ok
[2026-03-14 09:43:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 09:43:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 09:43:24] Further information can be found at the LHC@home message board.
[2026-03-14 09:43:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 09:43:24] Checking for apptainer binary...
[2026-03-14 09:43:24] which: no apptainer in ((null))
[2026-03-14 09:43:24] apptainer is not installed, using version from CVMFS
[2026-03-14 09:43:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 09:43:24] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot88/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-14 09:43:24] apptainer works
[2026-03-14 09:43:24] Set ATHENA_PROC_NUMBER=4
[2026-03-14 09:43:24] Set ATHENA_CORE_NUMBER=4
[2026-03-14 09:43:24] Starting ATLAS job with PandaID=7051816859
[2026-03-14 09:43:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot88/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 11:17:59]  *** The last 200 lines of the pilot log: ***
[2026-03-14 11:17:59]  is_altstaged=None
[2026-03-14 11:17:59]  is_tar=False
[2026-03-14 11:17:59]  lfn=log.48967030._004644.job.log.tgz.1
[2026-03-14 11:17:59]  mtime=0
[2026-03-14 11:17:59]  protocol_id=None
[2026-03-14 11:17:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-14 11:17:59]  replicas=None
[2026-03-14 11:17:59]  scope=mc23_13p6TeV
[2026-03-14 11:17:59]  status=None
[2026-03-14 11:17:59]  status_code=0
[2026-03-14 11:17:59]  storage_token=
[2026-03-14 11:17:59]  surl=/var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7051816859/log.48967030._004644.job.log.tgz.1
[2026-03-14 11:17:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/e2/log.48967030._004644.job.log.tgz.1
[2026-03-14 11:17:59]  workdir=None
[2026-03-14 11:17:59] ]
[2026-03-14 11:17:59] 2026-03-14 10:16:50,926 | INFO     | transferring file log.48967030._004644.job.log.tgz.1 from /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7051816859/log.48967030._004644.job.log.tgz.1 to /var/lib/b
[2026-03-14 11:17:59] 2026-03-14 10:16:50,926 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7051816859/log.48967030._004644.job.log.tgz.1 /var/lib/boinc/var/slot88/slots/2/lo
[2026-03-14 11:17:59] 2026-03-14 10:16:50,941 | INFO     | adding to output.list: log.48967030._004644.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/e2/log.48967030._004644.job.log.tg
[2026-03-14 11:17:59] 2026-03-14 10:16:50,942 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 11:17:59] 2026-03-14 10:16:50,942 | INFO     | summary of transferred files:
[2026-03-14 11:17:59] 2026-03-14 10:16:50,942 | INFO     |  -- lfn=log.48967030._004644.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 11:17:59] 2026-03-14 10:16:50,942 | INFO     | stage-out finished correctly
[2026-03-14 11:17:59] 2026-03-14 10:16:51,567 | INFO     | time since job start (5593s) is within the limit (345600.0s)
[2026-03-14 11:17:59] 2026-03-14 10:16:53,334 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 11:17:59] 2026-03-14 10:16:53,379 | INFO     | job 7051816859 has state=finished
[2026-03-14 11:17:59] 2026-03-14 10:16:53,379 | INFO     | preparing for final server update for job 7051816859 in state='finished'
[2026-03-14 11:17:59] 2026-03-14 10:16:53,380 | INFO     | reading metadata from: /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7051816859/jobReport.json
[2026-03-14 11:17:59] 2026-03-14 10:16:53,381 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot88/slots/2/workernode_map.json
[2026-03-14 11:17:59] 2026-03-14 10:16:53,381 | INFO     | this job has now completed (state=finished)
[2026-03-14 11:17:59] 2026-03-14 10:16:53,381 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 11:17:59] 2026-03-14 10:16:53,382 | INFO     | log transfer has been attempted: DONE
[2026-03-14 11:17:59] 2026-03-14 10:16:53,382 | INFO     | job 7051816859 has finished - writing final server update
[2026-03-14 11:17:59] 2026-03-14 10:16:53,382 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3875231/.job.ad'
[2026-03-14 11:17:59] 2026-03-14 10:16:53,382 | INFO     | total number of processed events: 400 (read)
[2026-03-14 11:17:59] 2026-03-14 10:16:53,399 | INFO     | using path: /var/lib/boinc/var/slot88/slots/2/PanDA_Pilot-7051816859/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 11:17:59] 2026-03-14 10:16:53,400 | INFO     | extracted standard info from prmon json
[2026-03-14 11:17:59] 2026-03-14 10:16:53,400 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 11:17:59] 2026-03-14 10:16:53,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 11:17:59] 2026-03-14 10:16:53,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 11:17:59] 2026-03-14 10:16:53,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 11:17:59] 2026-03-14 10:16:53,401 | INFO     | fitting pss+swap vs Time
[2026-03-14 11:17:59] 2026-03-14 10:16:53,401 | INFO     | sum of square deviations: 190403570.0
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | sum of deviations: -253204350.99999994
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | mean x: 1773480706.0
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | mean y: 2333262.2705882355
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | intersect: 2360760844.136578
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | chi2: 0.0005130206542113289
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | current memory leak: -1.33 B/s (using 85 data points, chi2=0.00)
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | could have reported an average CPU frequency of 3558 MHz (7 samples)
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | ..............................
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | . Timing measurements:
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | . get job = 0 s
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | . initial setup = 5 s
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | . payload setup = 5 s
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | . stage-in = 0 s
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | . payload execution = 5572 s
[2026-03-14 11:17:59] 2026-03-14 10:16:53,402 | INFO     | . stage-out = 0 s
[2026-03-14 11:17:59] 2026-03-14 10:16:53,403 | INFO     | . log creation = 0 s
[2026-03-14 11:17:59] 2026-03-14 10:16:53,403 | INFO     | ..............................
[2026-03-14 11:17:59] 2026-03-14 10:16:53,449 | INFO     | 
[2026-03-14 11:17:59] 2026-03-14 10:16:53,449 | INFO     | job summary report
[2026-03-14 11:17:59] 2026-03-14 10:16:53,449 | INFO     | --------------------------------------------------
[2026-03-14 11:17:59] 2026-03-14 10:16:53,449 | INFO     | PanDA job id: 7051816859
[2026-03-14 11:17:59] 2026-03-14 10:16:53,449 | INFO     | task id: 48967030
[2026-03-14 11:17:59] 2026-03-14 10:16:53,449 | INFO     | errors: (none)
[2026-03-14 11:17:59] 2026-03-14 10:16:53,449 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 11:17:59] 2026-03-14 10:16:53,449 | INFO     | pilot state: finished 
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | transexitcode: 0
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | exeerrorcode: 0
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | exeerrordiag: 
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | exitcode: 0
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | exitmsg: OK
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | cpuconsumptiontime: 21341 s
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | nevents: 400
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | neventsw: 0
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | pid: 191835
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | pgrp: 191835
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | corecount: 4
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | event service: False
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | sizes: {0: 2280253, 11: 2280253, 5581: 2306955, 5582: 2315975, 5584: 2316225}
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | --------------------------------------------------
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | 
[2026-03-14 11:17:59] 2026-03-14 10:16:53,450 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot88/slots/2
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,467 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 11:17:59] 2026-03-14 10:16:53,468 | INFO     | job 7051816859 has completed (purged errors)
[2026-03-14 11:17:59] 2026-03-14 10:16:53,468 | INFO     | overall cleanup function is called
[2026-03-14 11:17:59] 2026-03-14 10:16:54,372 | WARNING  | process 191835 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 11:17:59] 2026-03-14 10:16:54,475 | INFO     | --- collectZombieJob: --- 10, [191835]
[2026-03-14 11:17:59] 2026-03-14 10:16:54,476 | INFO     | zombie collector waiting for pid 191835
[2026-03-14 11:17:59] 2026-03-14 10:16:54,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 11:17:59] 2026-03-14 10:16:54,477 | INFO     | collected zombie processes
[2026-03-14 11:17:59] 2026-03-14 10:16:54,477 | INFO     | will attempt to kill all subprocesses of pid=191835
[2026-03-14 11:17:59] 2026-03-14 10:16:55,184 | INFO     | using path: /var/lib/boinc/var/slot88/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 11:17:59] 2026-03-14 10:16:56,114 | INFO     | process IDs to be killed: [191835] (in reverse order)
[2026-03-14 11:17:59] 2026-03-14 10:16:56,339 | INFO     | number of running child processes to parent process 191835: 1
[2026-03-14 11:17:59] 2026-03-14 10:16:56,339 | INFO     | maximum number of monitored processes: 6
[2026-03-14 11:17:59] 2026-03-14 10:16:56,339 | INFO     | aborting job monitoring since job object (job id=7051816859) has expired
[2026-03-14 11:17:59] 2026-03-14 10:16:56,353 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 11:17:59] 2026-03-14 10:16:56,353 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 11:17:59] 2026-03-14 10:16:56,384 | INFO     | did not find any defunct processes belonging to 191835
[2026-03-14 11:17:59] 2026-03-14 10:16:56,417 | INFO     | did not find any defunct processes belonging to 191835
[2026-03-14 11:17:59] 2026-03-14 10:16:56,418 | INFO     | ready for new job
[2026-03-14 11:17:59] 2026-03-14 10:16:56,418 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 11:17:59] 2026-03-14 10:16:56,419 | INFO     | **************************************
[2026-03-14 11:17:59] 2026-03-14 10:16:56,419 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 11:17:59] 2026-03-14 10:16:56,419 | INFO     | **************************************
[2026-03-14 11:17:59] 2026-03-14 10:16:56,419 | INFO     | 
[2026-03-14 11:17:59] 2026-03-14 10:16:56,425 | INFO     | architecture information:
[2026-03-14 11:17:59] 2026-03-14 10:16:56,426 | INFO     | executing command: cat /etc/os-release
[2026-03-14 11:17:59] 2026-03-14 10:16:56,440 | INFO     | cat /etc/os-release:
[2026-03-14 11:17:59] NAME="CentOS Linux"
[2026-03-14 11:17:59] VERSION="7 (Core)"
[2026-03-14 11:17:59] ID="centos"
[2026-03-14 11:17:59] ID_LIKE="rhel fedora"
[2026-03-14 11:17:59] VERSION_ID="7"
[2026-03-14 11:17:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 11:17:59] ANSI_COLOR="0;31"
[2026-03-14 11:17:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 11:17:59] HOME_URL="https://www.centos.org/"
[2026-03-14 11:17:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 11:17:59] 
[2026-03-14 11:17:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 11:17:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 11:17:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 11:17:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 11:17:59] 
[2026-03-14 11:17:59] 2026-03-14 10:16:56,441 | INFO     | **************************************
[2026-03-14 11:17:59] 2026-03-14 10:16:56,944 | INFO     | executing command: df -mP /var/lib/boinc/var/slot88/slots/2
[2026-03-14 11:17:59] 2026-03-14 10:16:56,959 | INFO     | sufficient remaining disk space (19815989248 B)
[2026-03-14 11:17:59] 2026-03-14 10:16:56,959 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 11:17:59] 2026-03-14 10:16:56,959 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 11:17:59] 2026-03-14 10:16:56,959 | INFO     | update_server=False
[2026-03-14 11:17:59] 2026-03-14 10:16:56,959 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 11:17:59] 2026-03-14 10:16:56,959 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 11:17:59] 2026-03-14 10:16:56,959 | INFO     | will abort loop
[2026-03-14 11:17:59] 2026-03-14 10:16:56,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 11:17:59] 2026-03-14 10:16:57,168 | INFO     | all job control threads have been joined
[2026-03-14 11:17:59] 2026-03-14 10:16:57,260 | INFO     | all payload control threads have been joined
[2026-03-14 11:17:59] 2026-03-14 10:16:57,964 | INFO     | [job] retrieve thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:57,965 | INFO     | [job] job monitor thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:57,967 | INFO     | all data control threads have been joined
[2026-03-14 11:17:59] 2026-03-14 10:16:58,174 | INFO     | [job] control thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:58,266 | INFO     | [payload] control thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:58,368 | INFO     | [job] validate thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:58,399 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:58,429 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:58,457 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:58,460 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 11:17:59] 2026-03-14 10:16:58,749 | INFO     | [data] copytool_in thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:58,846 | INFO     | [payload] failed_post thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:58,965 | INFO     | [data] copytool_out thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:58,973 | INFO     | [data] control thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:59,384 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 11:17:59] 2026-03-14 10:16:59,455 | INFO     | [payload] validate_post thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:16:59,465 | INFO     | [job] queue monitor thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:17:03,390 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:17:07,204 | INFO     | job.realtimelogging is not enabled
[2026-03-14 11:17:59] 2026-03-14 10:17:08,210 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 11:17:59] 2026-03-14 10:17:25,233 | INFO     | PID=180420 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 11:17:59] 2026-03-14 10:17:25,233 | INFO     | .. there are 47 such processes running
[2026-03-14 11:17:59] 2026-03-14 10:17:25,234 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 11:17:59] 2026-03-14 10:17:25,234 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 11:17:59] 2026-03-14 10:17:25,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 11:17:59] 2026-03-14 10:17:46,812 | INFO     | [monitor] cgroup control has ended
[2026-03-14 11:17:59] 2026-03-14 10:17:47,904 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22912645621568)>', '<ExcThread(monitor, started 22912401934080)>']
[2026-03-14 11:17:59] 2026-03-14 10:17:48,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 11:17:59] 2026-03-14 10:17:48,343 | INFO     | [monitor] control thread has ended
[2026-03-14 11:17:59] 2026-03-14 10:17:52,928 | INFO     | all workflow threads have been joined
[2026-03-14 11:17:59] 2026-03-14 10:17:52,929 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 11:17:59] 2026-03-14 10:17:52,929 | INFO     | traces error code: 0
[2026-03-14 11:17:59] 2026-03-14 10:17:52,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 11:17:59] 2026-03-14 10:17:53,050 [wrapper] ==== pilot stdout END ====
[2026-03-14 11:17:59] 2026-03-14 10:17:53,056 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 11:17:59] 2026-03-14 10:17:53,063 [wrapper] pilotpid: 180420
[2026-03-14 11:17:59] 2026-03-14 10:17:53,065 [wrapper] Pilot exit status: 0
[2026-03-14 11:17:59] 2026-03-14 10:17:53,072 [wrapper] pandaids: 7051816859
[2026-03-14 11:17:59] 2026-03-14 10:17:53,208 [wrapper] cleanup supervisor_pilot  897052 180421
[2026-03-14 11:17:59] 2026-03-14 10:17:53,210 [wrapper] Test setup, not cleaning
[2026-03-14 11:17:59] 2026-03-14 10:17:53,213 [wrapper] apfmon messages muted
[2026-03-14 11:17:59] 2026-03-14 10:17:53,215 [wrapper] ==== wrapper stdout END ====
[2026-03-14 11:17:59] 2026-03-14 10:17:53,217 [wrapper] ==== wrapper stderr END ====
[2026-03-14 11:17:59]  *** Error codes and diagnostics ***
[2026-03-14 11:17:59]     "exeErrorCode": 0,
[2026-03-14 11:17:59]     "exeErrorDiag": "",
[2026-03-14 11:17:59]     "pilotErrorCode": 0,
[2026-03-14 11:17:59]     "pilotErrorDiag": "",
[2026-03-14 11:17:59]  *** Listing of results directory ***
[2026-03-14 11:17:59] total 405212
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc    585013 Mar 12 15:32 pilot3.tar.gz
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc      5111 Mar 12 15:40 queuedata.json
[2026-03-14 11:17:59] -rwx------. 1 boinc boinc     36322 Mar 12 15:40 runpilot2-wrapper.sh
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc       100 Mar 14 09:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 11:17:59] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 09:43 run_atlas
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc       105 Mar 14 09:43 job.xml
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc      6707 Mar 14 09:43 init_data.xml
[2026-03-14 11:17:59] -rw-r--r--. 2 boinc boinc 213749321 Mar 14 09:43 EVNT.48967027._000184.pool.root.1
[2026-03-14 11:17:59] -rw-r--r--. 2 boinc boinc     15845 Mar 14 09:43 start_atlas.sh
[2026-03-14 11:17:59] drwxrwx--x. 2 boinc boinc      4096 Mar 14 09:43 shared
[2026-03-14 11:17:59] -rw-r--r--. 2 boinc boinc    597521 Mar 14 09:43 input.tar.gz
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc         0 Mar 14 09:43 boinc_lockfile
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc      2565 Mar 14 09:43 pandaJob.out
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc   1004579 Mar 14 09:43 agis_schedconf.cvmfs.json
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc   1511579 Mar 14 09:43 agis_ddmendpoints.agis.ALL.json
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc       444 Mar 14 09:43 workernode_map.json
[2026-03-14 11:17:59] drwx------. 5 boinc boinc      4096 Mar 14 09:43 pilot3
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc 195079040 Mar 14 11:16 HITS.48967030._004644.pool.root.1
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc       529 Mar 14 11:16 boinc_task_state.xml
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc      1031 Mar 14 11:16 memory_monitor_summary.json
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc    274702 Mar 14 11:16 log.48967030._004644.job.log.tgz.1
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc      6352 Mar 14 11:16 heartbeat.json
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc        95 Mar 14 11:17 pilot_heartbeat.json
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc      8192 Mar 14 11:17 boinc_mmap_file
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc        27 Mar 14 11:17 wrapper_checkpoint.txt
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc      4903 Mar 14 11:17 pilotlog.txt
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc    809547 Mar 14 11:17 log.48967030._004644.job.log.1
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc       357 Mar 14 11:17 output.list
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc       620 Mar 14 11:17 runtime_log
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc   1105920 Mar 14 11:17 result.tar.gz
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc      9204 Mar 14 11:17 runtime_log.err
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc       662 Mar 14 11:17 f9YMDmPOwK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmyKkLDmiXp4zn.diag
[2026-03-14 11:17:59] -rw-r--r--. 1 boinc boinc     21328 Mar 14 11:17 stderr.txt
[2026-03-14 11:17:59] HITS file was successfully produced:
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc 195079040 Mar 14 11:16 shared/HITS.pool.root.1
[2026-03-14 11:17:59]  *** Contents of shared directory: ***
[2026-03-14 11:17:59] total 400936
[2026-03-14 11:17:59] -rw-r--r--. 2 boinc boinc 213749321 Mar 14 09:43 ATLAS.root_0
[2026-03-14 11:17:59] -rw-r--r--. 2 boinc boinc     15845 Mar 14 09:43 start_atlas.sh
[2026-03-14 11:17:59] -rw-r--r--. 2 boinc boinc    597521 Mar 14 09:43 input.tar.gz
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc 195079040 Mar 14 11:16 HITS.pool.root.1
[2026-03-14 11:17:59] -rw-------. 1 boinc boinc   1105920 Mar 14 11:17 result.tar.gz
11:18:01 (171439): run_atlas exited; CPU time 21604.124175
11:18:01 (171439): called boinc_finish(0)

</stderr_txt>
]]>

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