Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:33:44 (24213): wrapper (7.7.26015): starting
08:33:44 (24213): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 08:33:44] Arguments: --nthreads 8
[2026-03-13 08:33:44] Threads: 8
[2026-03-13 08:33:44] Checking for CVMFS
[2026-03-13 08:33:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 08:33:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 08:33:48] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 08:33:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 08:33:49] 2.11.2.0 26786 125839 107608 157232 0 53 21670849 25165825 188 130560 153 44286089 99.833 32344806 1046 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 08:33:49] CVMFS is ok
[2026-03-13 08:33:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 08:33:49] Checking for apptainer binary...
[2026-03-13 08:33:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 08:33:50] Running /usr/bin/apptainer --version
[2026-03-13 08:33:50] apptainer version 1.3.2-1.el7
[2026-03-13 08:33:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 08:34:05] cg-vwn410.simple-grid.lan
[2026-03-13 08:34:05] apptainer works
[2026-03-13 08:34:05] Set ATHENA_PROC_NUMBER=8
[2026-03-13 08:34:05] Set ATHENA_CORE_NUMBER=8
[2026-03-13 08:34:05] Starting ATLAS job with PandaID=7051816687
[2026-03-13 08:34:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 12:58:03]  *** The last 200 lines of the pilot log: ***
[2026-03-13 12:58:03] 2026-03-13 11:57:06,982 | INFO     | total number of processed events: 400 (read)
[2026-03-13 12:58:03] 2026-03-13 11:57:06,984 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-7051816687/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 12:58:03] 2026-03-13 11:57:06,985 | INFO     | extracted standard info from prmon json
[2026-03-13 12:58:03] 2026-03-13 11:57:06,985 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 12:58:03] 2026-03-13 11:57:06,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 12:58:03] 2026-03-13 11:57:06,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 12:58:03] 2026-03-13 11:57:06,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 12:58:03] 2026-03-13 11:57:06,991 | INFO     | fitting pss+swap vs Time
[2026-03-13 12:58:03] 2026-03-13 11:57:06,992 | INFO     | sum of square deviations: 4729621702.0
[2026-03-13 12:58:03] 2026-03-13 11:57:06,994 | INFO     | sum of deviations: 111641862822.50002
[2026-03-13 12:58:03] 2026-03-13 11:57:06,994 | INFO     | mean x: 1773395455.5
[2026-03-13 12:58:03] 2026-03-13 11:57:06,994 | INFO     | mean y: 2421567.495967742
[2026-03-13 12:58:03] 2026-03-13 11:57:06,995 | INFO     | intersect: -41858256653.18595
[2026-03-13 12:58:03] 2026-03-13 11:57:06,995 | INFO     | chi2: 7.877068819938614
[2026-03-13 12:58:03] 2026-03-13 11:57:06,996 | INFO     | sum of square deviations: 4449281562.0
[2026-03-13 12:58:03] 2026-03-13 11:57:06,998 | INFO     | sum of deviations: 125423298283.99998
[2026-03-13 12:58:03] 2026-03-13 11:57:06,998 | INFO     | mean x: 1773395303.0
[2026-03-13 12:58:03] 2026-03-13 11:57:06,998 | INFO     | mean y: 2428918.5802469137
[2026-03-13 12:58:03] 2026-03-13 11:57:06,998 | INFO     | intersect: -49988807860.696785
[2026-03-13 12:58:03] 2026-03-13 11:57:06,999 | INFO     | chi2: 7.176445453669801
[2026-03-13 12:58:03] 2026-03-13 11:57:06,999 | INFO     | current chi2=7.176445453669801 (change=8.89446800941208 %)
[2026-03-13 12:58:03] 2026-03-13 11:57:06,999 | INFO     | right removable region: 242
[2026-03-13 12:58:03] 2026-03-13 11:57:06,999 | INFO     | sum of square deviations: 4449281562.0
[2026-03-13 12:58:03] 2026-03-13 11:57:07,002 | INFO     | sum of deviations: 26640720563.999992
[2026-03-13 12:58:03] 2026-03-13 11:57:07,002 | INFO     | mean x: 1773395608.0
[2026-03-13 12:58:03] 2026-03-13 11:57:07,002 | INFO     | mean y: 2467770.238683128
[2026-03-13 12:58:03] 2026-03-13 11:57:07,002 | INFO     | intersect: -10615996398.371033
[2026-03-13 12:58:03] 2026-03-13 11:57:07,003 | INFO     | chi2: 2.9994191757648667
[2026-03-13 12:58:03] 2026-03-13 11:57:07,003 | INFO     | current chi2=2.9994191757648667 (change=61.92214078195344 %)
[2026-03-13 12:58:03] 2026-03-13 11:57:07,003 | INFO     | sum of square deviations: 4180243959.5
[2026-03-13 12:58:03] 2026-03-13 11:57:07,005 | INFO     | sum of deviations: -27633561535.500008
[2026-03-13 12:58:03] 2026-03-13 11:57:07,005 | INFO     | mean x: 1773395760.5
[2026-03-13 12:58:03] 2026-03-13 11:57:07,006 | INFO     | mean y: 2498420.4663865548
[2026-03-13 12:58:03] 2026-03-13 11:57:07,006 | INFO     | intersect: 11725556057.617573
[2026-03-13 12:58:03] 2026-03-13 11:57:07,006 | INFO     | chi2: 0.9377284265120706
[2026-03-13 12:58:03] 2026-03-13 11:57:07,006 | INFO     | current chi2=0.9377284265120706 (change=68.73633288441769 %)
[2026-03-13 12:58:03] 2026-03-13 11:57:07,007 | INFO     | sum of square deviations: 3922276332.0
[2026-03-13 12:58:03] 2026-03-13 11:57:07,009 | INFO     | sum of deviations: -31405534569.0
[2026-03-13 12:58:03] 2026-03-13 11:57:07,009 | INFO     | mean x: 1773395913.0
[2026-03-13 12:58:03] 2026-03-13 11:57:07,009 | INFO     | mean y: 2500607.918454936
[2026-03-13 12:58:03] 2026-03-13 11:57:07,009 | INFO     | intersect: 14202021991.932154
[2026-03-13 12:58:03] 2026-03-13 11:57:07,010 | INFO     | chi2: 0.8984692498074252
[2026-03-13 12:58:03] 2026-03-13 11:57:07,010 | INFO     | current chi2=0.8984692498074252 (change=4.1866254231698985 %)
[2026-03-13 12:58:03] 2026-03-13 11:57:07,010 | INFO     | left removable region: 30
[2026-03-13 12:58:03] 2026-03-13 11:57:07,011 | INFO     | sum of square deviations: 2954447953.0
[2026-03-13 12:58:03] 2026-03-13 11:57:07,012 | INFO     | sum of deviations: 6006109745.499998
[2026-03-13 12:58:03] 2026-03-13 11:57:07,013 | INFO     | mean x: 1773396187.5
[2026-03-13 12:58:03] 2026-03-13 11:57:07,013 | INFO     | mean y: 2495503.3349056602
[2026-03-13 12:58:03] 2026-03-13 11:57:07,013 | INFO     | intersect: -3602649110.419708
[2026-03-13 12:58:03] 2026-03-13 11:57:07,013 | INFO     | chi2: 0.0005053984347284167
[2026-03-13 12:58:03] 2026-03-13 11:57:07,013 | INFO     | current memory leak: 2.03 B/s (using 212 data points, chi2=0.00)
[2026-03-13 12:58:03] 2026-03-13 11:57:07,014 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-03-13 12:58:03] 2026-03-13 11:57:07,014 | INFO     | ..............................
[2026-03-13 12:58:03] 2026-03-13 11:57:07,014 | INFO     | . Timing measurements:
[2026-03-13 12:58:03] 2026-03-13 11:57:07,015 | INFO     | . get job = 0 s
[2026-03-13 12:58:03] 2026-03-13 11:57:07,015 | INFO     | . initial setup = 127 s
[2026-03-13 12:58:03] 2026-03-13 11:57:07,015 | INFO     | . payload setup = 151 s
[2026-03-13 12:58:03] 2026-03-13 11:57:07,015 | INFO     | . stage-in = 0 s
[2026-03-13 12:58:03] 2026-03-13 11:57:07,015 | INFO     | . payload execution = 15224 s
[2026-03-13 12:58:03] 2026-03-13 11:57:07,015 | INFO     | . stage-out = 3 s
[2026-03-13 12:58:03] 2026-03-13 11:57:07,015 | INFO     | . log creation = 1 s
[2026-03-13 12:58:03] 2026-03-13 11:57:07,015 | INFO     | ..............................
[2026-03-13 12:58:03] 2026-03-13 11:57:07,163 | INFO     | 
[2026-03-13 12:58:03] 2026-03-13 11:57:07,163 | INFO     | job summary report
[2026-03-13 12:58:03] 2026-03-13 11:57:07,163 | INFO     | --------------------------------------------------
[2026-03-13 12:58:03] 2026-03-13 11:57:07,163 | INFO     | PanDA job id: 7051816687
[2026-03-13 12:58:03] 2026-03-13 11:57:07,163 | INFO     | task id: 48967030
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | errors: (none)
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | pilot state: finished 
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | transexitcode: 0
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | exeerrorcode: 0
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | exeerrordiag: 
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | exitcode: 0
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | exitmsg: OK
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | cpuconsumptiontime: 63958 s
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | nevents: 400
[2026-03-13 12:58:03] 2026-03-13 11:57:07,164 | INFO     | neventsw: 0
[2026-03-13 12:58:03] 2026-03-13 11:57:07,165 | INFO     | pid: 32666
[2026-03-13 12:58:03] 2026-03-13 11:57:07,165 | INFO     | pgrp: 32666
[2026-03-13 12:58:03] 2026-03-13 11:57:07,165 | INFO     | corecount: 8
[2026-03-13 12:58:03] 2026-03-13 11:57:07,165 | INFO     | event service: False
[2026-03-13 12:58:03] 2026-03-13 11:57:07,165 | INFO     | sizes: {0: 2279152, 1: 2254191, 2: 2280270, 13: 2280298, 15379: 2311382, 15380: 2311381, 15384: 2320563, 15387: 2320619, 15388: 2320813}
[2026-03-13 12:58:03] 2026-03-13 11:57:07,165 | INFO     | --------------------------------------------------
[2026-03-13 12:58:03] 2026-03-13 11:57:07,165 | INFO     | 
[2026-03-13 12:58:03] 2026-03-13 11:57:07,165 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-03-13 12:58:03] 2026-03-13 11:57:07,538 | INFO     | time since job start (15401s) is within the limit (345600.0s)
[2026-03-13 12:58:03] 2026-03-13 11:57:07,559 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,560 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,560 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,560 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,562 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 12:58:03] 2026-03-13 11:57:07,562 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,562 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 12:58:03] 2026-03-13 11:57:07,562 | INFO     | job 7051816687 has completed (purged errors)
[2026-03-13 12:58:03] 2026-03-13 11:57:07,562 | INFO     | overall cleanup function is called
[2026-03-13 12:58:03] 2026-03-13 11:57:08,571 | INFO     | --- collectZombieJob: --- 10, [32666]
[2026-03-13 12:58:03] 2026-03-13 11:57:08,571 | INFO     | zombie collector waiting for pid 32666
[2026-03-13 12:58:03] 2026-03-13 11:57:08,571 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 12:58:03] 2026-03-13 11:57:08,571 | INFO     | collected zombie processes
[2026-03-13 12:58:03] 2026-03-13 11:57:08,572 | INFO     | will attempt to kill all subprocesses of pid=32666
[2026-03-13 12:58:03] 2026-03-13 11:57:08,653 | INFO     | process IDs to be killed: [32666] (in reverse order)
[2026-03-13 12:58:03] 2026-03-13 11:57:09,318 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 12:58:03] 2026-03-13 11:57:09,318 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 12:58:03] 2026-03-13 11:57:09,320 | INFO     | did not find any defunct processes belonging to 32666
[2026-03-13 12:58:03] 2026-03-13 11:57:09,322 | INFO     | did not find any defunct processes belonging to 32666
[2026-03-13 12:58:03] 2026-03-13 11:57:09,322 | INFO     | ready for new job
[2026-03-13 12:58:03] 2026-03-13 11:57:09,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 12:58:03] 2026-03-13 11:57:09,324 | INFO     | **************************************
[2026-03-13 12:58:03] 2026-03-13 11:57:09,325 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 12:58:03] 2026-03-13 11:57:09,325 | INFO     | **************************************
[2026-03-13 12:58:03] 2026-03-13 11:57:09,325 | INFO     | 
[2026-03-13 12:58:03] 2026-03-13 11:57:09,326 | INFO     | pilot is running in a VM
[2026-03-13 12:58:03] 2026-03-13 11:57:09,326 | INFO     | architecture information:
[2026-03-13 12:58:03] 2026-03-13 11:57:09,331 | INFO     | executing command: cat /etc/os-release
[2026-03-13 12:58:03] 2026-03-13 11:57:09,620 | INFO     | cat /etc/os-release:
[2026-03-13 12:58:03] NAME="CentOS Linux"
[2026-03-13 12:58:03] VERSION="7 (Core)"
[2026-03-13 12:58:03] ID="centos"
[2026-03-13 12:58:03] ID_LIKE="rhel fedora"
[2026-03-13 12:58:03] VERSION_ID="7"
[2026-03-13 12:58:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 12:58:03] ANSI_COLOR="0;31"
[2026-03-13 12:58:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 12:58:03] HOME_URL="https://www.centos.org/"
[2026-03-13 12:58:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 12:58:03] 
[2026-03-13 12:58:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 12:58:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 12:58:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 12:58:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 12:58:03] 
[2026-03-13 12:58:03] 2026-03-13 11:57:09,621 | INFO     | **************************************
[2026-03-13 12:58:03] 2026-03-13 11:57:10,124 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-03-13 12:58:03] 2026-03-13 11:57:10,319 | INFO     | sufficient remaining disk space (496478715904 B)
[2026-03-13 12:58:03] 2026-03-13 11:57:10,319 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 12:58:03] 2026-03-13 11:57:10,319 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 12:58:03] 2026-03-13 11:57:10,319 | INFO     | update_server=False
[2026-03-13 12:58:03] 2026-03-13 11:57:10,319 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 12:58:03] 2026-03-13 11:57:11,021 | INFO     | all payload control threads have been joined
[2026-03-13 12:58:03] 2026-03-13 11:57:11,057 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 12:58:03] 2026-03-13 11:57:11,057 | INFO     | aborting loop
[2026-03-13 12:58:03] 2026-03-13 11:57:11,231 | INFO     | all job control threads have been joined
[2026-03-13 12:58:03] 2026-03-13 11:57:11,313 | INFO     | all data control threads have been joined
[2026-03-13 12:58:03] 2026-03-13 11:57:11,325 | INFO     | [job] retrieve thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:11,491 | INFO     | [payload] validate_post thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:11,527 | INFO     | [data] copytool_in thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:11,716 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 12:58:03] 2026-03-13 11:57:11,814 | INFO     | [payload] failed_post thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:11,852 | INFO     | [job] validate thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:12,027 | INFO     | [payload] control thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:12,063 | INFO     | [job] job monitor thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:12,096 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:12,178 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 12:58:03] 2026-03-13 11:57:12,237 | INFO     | [job] control thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:12,239 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:12,254 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:12,319 | INFO     | [data] control thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:12,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 12:58:03] 2026-03-13 11:57:13,184 | INFO     | [job] queue monitor thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:13,723 | INFO     | [data] copytool_out thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:17,002 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:20,847 | INFO     | job.realtimelogging is not enabled
[2026-03-13 12:58:03] 2026-03-13 11:57:21,853 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 12:58:03] 2026-03-13 11:57:40,767 | INFO     | PID=28209 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 12:58:03] 2026-03-13 11:57:40,768 | INFO     | .. there are 2 such processes running
[2026-03-13 12:58:03] 2026-03-13 11:57:40,777 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 12:58:03] 2026-03-13 11:57:40,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 12:58:03] 2026-03-13 11:57:40,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 12:58:03] 2026-03-13 11:57:51,883 | INFO     | [monitor] cgroup control has ended
[2026-03-13 12:58:03] 2026-03-13 11:57:53,522 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139709960922944)>', '<ExcThread(monitor, started 139709674137344)>']
[2026-03-13 12:58:03] 2026-03-13 11:57:53,858 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 12:58:03] 2026-03-13 11:57:53,858 | INFO     | [monitor] control thread has ended
[2026-03-13 12:58:03] 2026-03-13 11:57:58,548 | INFO     | all workflow threads have been joined
[2026-03-13 12:58:03] 2026-03-13 11:57:58,548 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 12:58:03] 2026-03-13 11:57:58,548 | INFO     | traces error code: 0
[2026-03-13 12:58:03] 2026-03-13 11:57:58,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 12:58:03] 2026-03-13 11:57:58,923 [wrapper] ==== pilot stdout END ====
[2026-03-13 12:58:03] 2026-03-13 11:57:59,047 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 12:58:03] 2026-03-13 11:57:59,160 [wrapper] pilotpid: 28209
[2026-03-13 12:58:03] 2026-03-13 11:57:59,289 [wrapper] Pilot exit status: 0
[2026-03-13 12:58:03] 2026-03-13 11:57:59,785 [wrapper] pandaids: 7051816687
[2026-03-13 12:58:03] 2026-03-13 11:58:00,810 [wrapper] cleanup supervisor_pilot 22140 28210
[2026-03-13 12:58:03] 2026-03-13 11:58:00,882 [wrapper] Test setup, not cleaning
[2026-03-13 12:58:03] 2026-03-13 11:58:00,956 [wrapper] apfmon messages muted
[2026-03-13 12:58:03] 2026-03-13 11:58:01,039 [wrapper] ==== wrapper stdout END ====
[2026-03-13 12:58:03] 2026-03-13 11:58:01,124 [wrapper] ==== wrapper stderr END ====
[2026-03-13 12:58:03]  *** Error codes and diagnostics ***
[2026-03-13 12:58:03]     "exeErrorCode": 0,
[2026-03-13 12:58:03]     "exeErrorDiag": "",
[2026-03-13 12:58:03]     "pilotErrorCode": 0,
[2026-03-13 12:58:03]     "pilotErrorDiag": "",
[2026-03-13 12:58:03]  *** Listing of results directory ***
[2026-03-13 12:58:03] total 411888
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc    585013 Mar 12 15:32 pilot3.tar.gz
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc      5111 Mar 12 15:40 queuedata.json
[2026-03-13 12:58:03] -rwx------. 1 boinc boinc     36322 Mar 12 15:40 runpilot2-wrapper.sh
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc       100 Mar 13 08:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 12:58:03] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 08:33 run_atlas
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc       105 Mar 13 08:33 job.xml
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc      6391 Mar 13 08:33 init_data.xml
[2026-03-13 12:58:03] -rw-r--r--. 2 boinc boinc 213663390 Mar 13 08:33 EVNT.48967027._000177.pool.root.1
[2026-03-13 12:58:03] -rw-r--r--. 2 boinc boinc     15845 Mar 13 08:33 start_atlas.sh
[2026-03-13 12:58:03] drwxrwx--x. 2 boinc boinc        68 Mar 13 08:33 shared
[2026-03-13 12:58:03] -rw-r--r--. 2 boinc boinc    597515 Mar 13 08:33 input.tar.gz
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc         0 Mar 13 08:33 boinc_lockfile
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc      2565 Mar 13 08:34 pandaJob.out
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc       415 Mar 13 08:40 workernode_map.json
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc   1006506 Mar 13 08:40 agis_schedconf.cvmfs.json
[2026-03-13 12:58:03] drwx------. 5 boinc boinc      4096 Mar 13 08:40 pilot3
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc 198915999 Mar 13 12:55 HITS.48967030._004472.pool.root.1
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc       530 Mar 13 12:55 boinc_task_state.xml
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc      1020 Mar 13 12:56 memory_monitor_summary.json
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc   1511578 Mar 13 12:57 agis_ddmendpoints.agis.ALL.json
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc    476960 Mar 13 12:57 log.48967030._004472.job.log.tgz.1
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc      6332 Mar 13 12:57 heartbeat.json
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc        95 Mar 13 12:57 pilot_heartbeat.json
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc      4952 Mar 13 12:57 pilotlog.txt
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc   2162546 Mar 13 12:58 log.48967030._004472.job.log.1
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc       357 Mar 13 12:58 output.list
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc       620 Mar 13 12:58 runtime_log
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc   2652160 Mar 13 12:58 result.tar.gz
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc      8192 Mar 13 12:58 boinc_mmap_file
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc        28 Mar 13 12:58 wrapper_checkpoint.txt
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc      8816 Mar 13 12:58 runtime_log.err
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc       655 Mar 13 12:58 ay6MDmOOwK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm82mLDmi6pBEo.diag
[2026-03-13 12:58:03] -rw-r--r--. 1 boinc boinc     20735 Mar 13 12:58 stderr.txt
[2026-03-13 12:58:03] HITS file was successfully produced:
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc 198915999 Mar 13 12:55 shared/HITS.pool.root.1
[2026-03-13 12:58:03]  *** Contents of shared directory: ***
[2026-03-13 12:58:03] total 406104
[2026-03-13 12:58:03] -rw-r--r--. 2 boinc boinc 213663390 Mar 13 08:33 ATLAS.root_0
[2026-03-13 12:58:03] -rw-r--r--. 2 boinc boinc     15845 Mar 13 08:33 start_atlas.sh
[2026-03-13 12:58:03] -rw-r--r--. 2 boinc boinc    597515 Mar 13 08:33 input.tar.gz
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc 198915999 Mar 13 12:55 HITS.pool.root.1
[2026-03-13 12:58:03] -rw-------. 1 boinc boinc   2652160 Mar 13 12:58 result.tar.gz
12:58:05 (24213): run_atlas exited; CPU time 64127.672351
12:58:05 (24213): called boinc_finish(0)

</stderr_txt>
]]>

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