Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:21:51 (3343444): wrapper (7.7.26015): starting
10:21:51 (3343444): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 10:21:51] Arguments: --nthreads 3
[2026-03-13 10:21:51] Threads: 3
[2026-03-13 10:21:51] Checking for CVMFS
[2026-03-13 10:21:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 10:21:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 10:21:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 10:21:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 10:21:52] 2.9.2.0 36558 22695 90556 157234 2 49 29634501 36864000 0 130560 0 9281686 99.983 848072 13606 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 10:21:52] CVMFS is ok
[2026-03-13 10:21:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 10:21:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 10:21:52] Further information can be found at the LHC@home message board.
[2026-03-13 10:21:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 10:21:52] Checking for apptainer binary...
[2026-03-13 10:21:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 10:21:52] Running /usr/bin/apptainer --version
[2026-03-13 10:21:52] apptainer version 1.4.1-1.1
[2026-03-13 10:21:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 10:21:52] magicA252
[2026-03-13 10:21:52] apptainer works
[2026-03-13 10:21:52] Set ATHENA_PROC_NUMBER=3
[2026-03-13 10:21:52] Set ATHENA_CORE_NUMBER=3
[2026-03-13 10:21:52] Starting ATLAS job with PandaID=7051816675
[2026-03-13 10:21:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 11:55:14]  *** The last 200 lines of the pilot log: ***
[2026-03-13 11:55:14] 2026-03-13 10:54:32,459 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | job 7051816675 has completed (purged errors)
[2026-03-13 11:55:14] 2026-03-13 10:54:32,460 | INFO     | overall cleanup function is called
[2026-03-13 11:55:14] 2026-03-13 10:54:33,462 | INFO     | --- collectZombieJob: --- 10, [3351915]
[2026-03-13 11:55:14] 2026-03-13 10:54:33,462 | INFO     | zombie collector waiting for pid 3351915
[2026-03-13 11:55:14] 2026-03-13 10:54:33,462 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 11:55:14] 2026-03-13 10:54:33,462 | INFO     | collected zombie processes
[2026-03-13 11:55:14] 2026-03-13 10:54:33,462 | INFO     | will attempt to kill all subprocesses of pid=3351915
[2026-03-13 11:55:14] 2026-03-13 10:54:33,502 | INFO     | process IDs to be killed: [3351915] (in reverse order)
[2026-03-13 11:55:14] 2026-03-13 10:54:33,528 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 11:55:14] 2026-03-13 10:54:33,528 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 11:55:14] 2026-03-13 10:54:33,530 | INFO     | did not find any defunct processes belonging to 3351915
[2026-03-13 11:55:14] 2026-03-13 10:54:33,531 | INFO     | did not find any defunct processes belonging to 3351915
[2026-03-13 11:55:14] 2026-03-13 10:54:33,531 | INFO     | ready for new job
[2026-03-13 11:55:14] 2026-03-13 10:54:33,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 11:55:14] 2026-03-13 10:54:33,532 | INFO     | **************************************
[2026-03-13 11:55:14] 2026-03-13 10:54:33,532 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 11:55:14] 2026-03-13 10:54:33,532 | INFO     | **************************************
[2026-03-13 11:55:14] 2026-03-13 10:54:33,532 | INFO     | 
[2026-03-13 11:55:14] 2026-03-13 10:54:33,532 | INFO     | architecture information:
[2026-03-13 11:55:14] 2026-03-13 10:54:33,532 | INFO     | executing command: cat /etc/os-release
[2026-03-13 11:55:14] 2026-03-13 10:54:33,542 | INFO     | cat /etc/os-release:
[2026-03-13 11:55:14] NAME="CentOS Linux"
[2026-03-13 11:55:14] VERSION="7 (Core)"
[2026-03-13 11:55:14] ID="centos"
[2026-03-13 11:55:14] ID_LIKE="rhel fedora"
[2026-03-13 11:55:14] VERSION_ID="7"
[2026-03-13 11:55:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 11:55:14] ANSI_COLOR="0;31"
[2026-03-13 11:55:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 11:55:14] HOME_URL="https://www.centos.org/"
[2026-03-13 11:55:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 11:55:14] 
[2026-03-13 11:55:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 11:55:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 11:55:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 11:55:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 11:55:14] 
[2026-03-13 11:55:14] 2026-03-13 10:54:33,542 | INFO     | **************************************
[2026-03-13 11:55:14] 2026-03-13 10:54:34,046 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 11:55:14] 2026-03-13 10:54:34,058 | INFO     | sufficient remaining disk space (373912764416 B)
[2026-03-13 11:55:14] 2026-03-13 10:54:34,058 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 11:55:14] 2026-03-13 10:54:34,058 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 11:55:14] 2026-03-13 10:54:34,058 | INFO     | update_server=False
[2026-03-13 11:55:14] 2026-03-13 10:54:34,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 11:55:14] 2026-03-13 10:54:34,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 11:55:14] 2026-03-13 10:54:34,059 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 11:55:14] 2026-03-13 10:54:34,059 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 11:55:14] 2026-03-13 10:54:34,059 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-13 11:55:14] 2026-03-13 10:54:34,059 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 11:55:14] 2026-03-13 10:54:34,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 11:55:14] 2026-03-13 10:54:34,059 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 11:55:14] 2026-03-13 10:54:34,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 11:55:14] 2026-03-13 10:54:34,118 | INFO     | aborting loop
[2026-03-13 11:55:14] 2026-03-13 10:54:34,140 | INFO     | all payload control threads have been joined
[2026-03-13 11:55:14] 2026-03-13 10:54:34,407 | INFO     | all data control threads have been joined
[2026-03-13 11:55:14] 2026-03-13 10:54:34,939 | INFO     | all job control threads have been joined
[2026-03-13 11:55:14] 2026-03-13 10:54:35,059 | INFO     | [job] retrieve thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:35,064 | INFO     | [job] queue monitor thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:35,118 | INFO     | [job] job monitor thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:35,145 | INFO     | [payload] control thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:35,412 | INFO     | [data] control thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:35,422 | INFO     | [payload] validate_post thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:35,942 | INFO     | [job] control thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:35,969 | INFO     | [job] validate thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:36,061 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:36,065 | INFO     | [data] copytool_out thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:36,075 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:36,141 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:36,308 | INFO     | [data] copytool_in thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:36,494 | INFO     | [payload] failed_post thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:38,066 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:54:44,547 | INFO     | job.realtimelogging is not enabled
[2026-03-13 11:55:14] 2026-03-13 10:54:45,552 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 11:55:14] 2026-03-13 10:55:09,008 | INFO     | [monitor] cgroup control has ended
[2026-03-13 11:55:14] 2026-03-13 10:55:09,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140507300595520)>', '<ExcThread(monitor, started 140506801616640)>']
[2026-03-13 11:55:14] 2026-03-13 10:55:10,250 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 11:55:14] 2026-03-13 10:55:10,250 | INFO     | [monitor] control thread has ended
[2026-03-13 11:55:14] 2026-03-13 10:55:14,852 | INFO     | all workflow threads have been joined
[2026-03-13 11:55:14] 2026-03-13 10:55:14,852 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 11:55:14] 2026-03-13 10:55:14,852 | INFO     | traces error code: 0
[2026-03-13 11:55:14] 2026-03-13 10:55:14,853 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 11:55:14] 2026-03-13 10:55:14,901 [wrapper] ==== pilot stdout END ====
[2026-03-13 11:55:14] 2026-03-13 10:55:14,904 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 11:55:14] 2026-03-13 10:55:14,907 [wrapper] pilotpid: 3347482
[2026-03-13 11:55:14] 2026-03-13 10:55:14,909 [wrapper] Pilot exit status: 0
[2026-03-13 11:55:14] 2026-03-13 10:55:14,917 [wrapper] pandaids: 7051816675
[2026-03-13 11:55:14] 2026-03-13 10:55:14,934 [wrapper] cleanup supervisor_pilot 3357536 3347483
[2026-03-13 11:55:14] 2026-03-13 10:55:14,937 [wrapper] Test setup, not cleaning
[2026-03-13 11:55:14] 2026-03-13 10:55:14,939 [wrapper] apfmon messages muted
[2026-03-13 11:55:14] 2026-03-13 10:55:14,942 [wrapper] ==== wrapper stdout END ====
[2026-03-13 11:55:14] 2026-03-13 10:55:14,944 [wrapper] ==== wrapper stderr END ====
[2026-03-13 11:55:14]  *** Error codes and diagnostics ***
[2026-03-13 11:55:14]     "exeErrorCode": 0,
[2026-03-13 11:55:14]     "exeErrorDiag": "",
[2026-03-13 11:55:14]     "pilotErrorCode": 0,
[2026-03-13 11:55:14]     "pilotErrorDiag": "",
[2026-03-13 11:55:14]  *** Listing of results directory ***
[2026-03-13 11:55:14] total 410216
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc    585013 Mar 12 15:32 pilot3.tar.gz
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc      5111 Mar 12 15:40 queuedata.json
[2026-03-13 11:55:14] -rwx------ 1 boinc boinc     36322 Mar 12 15:40 runpilot2-wrapper.sh
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc       100 Mar 13 10:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 11:55:14] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 10:21 run_atlas
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc       105 Mar 13 10:21 job.xml
[2026-03-13 11:55:14] -rw-r--r-- 2 boinc boinc 214582257 Mar 13 10:21 EVNT.48967027._000176.pool.root.1
[2026-03-13 11:55:14] drwxrwx--x 2 boinc boinc      4096 Mar 13 10:21 shared
[2026-03-13 11:55:14] -rw-r--r-- 2 boinc boinc    597516 Mar 13 10:21 input.tar.gz
[2026-03-13 11:55:14] -rw-r--r-- 2 boinc boinc     15845 Mar 13 10:21 start_atlas.sh
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc         0 Mar 13 10:21 boinc_setup_complete
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc      6447 Mar 13 10:21 init_data.xml
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc         0 Mar 13 10:21 boinc_lockfile
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc      2565 Mar 13 10:21 pandaJob.out
[2026-03-13 11:55:14] -rw------- 1 boinc boinc   1006487 Mar 13 10:21 agis_schedconf.cvmfs.json
[2026-03-13 11:55:14] -rw------- 1 boinc boinc   1511578 Mar 13 10:21 agis_ddmendpoints.agis.ALL.json
[2026-03-13 11:55:14] -rw------- 1 boinc boinc       426 Mar 13 10:22 workernode_map.json
[2026-03-13 11:55:14] drwx------ 5 boinc boinc      4096 Mar 13 10:22 pilot3
[2026-03-13 11:55:14] -rw------- 1 boinc boinc 199374325 Mar 13 11:54 HITS.48967030._004460.pool.root.1
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc       529 Mar 13 11:54 boinc_task_state.xml
[2026-03-13 11:55:14] -rw------- 1 boinc boinc      1031 Mar 13 11:54 memory_monitor_summary.json
[2026-03-13 11:55:14] -rw------- 1 boinc boinc        95 Mar 13 11:54 pilot_heartbeat.json
[2026-03-13 11:55:14] -rw------- 1 boinc boinc    278805 Mar 13 11:54 log.48967030._004460.job.log.tgz.1
[2026-03-13 11:55:14] -rw------- 1 boinc boinc      6308 Mar 13 11:54 heartbeat.json
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc      8192 Mar 13 11:54 boinc_mmap_file
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc        27 Mar 13 11:54 wrapper_checkpoint.txt
[2026-03-13 11:55:14] -rw------- 1 boinc boinc      4624 Mar 13 11:55 pilotlog.txt
[2026-03-13 11:55:14] -rw------- 1 boinc boinc    809056 Mar 13 11:55 log.48967030._004460.job.log.1
[2026-03-13 11:55:14] -rw------- 1 boinc boinc       357 Mar 13 11:55 output.list
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc       620 Mar 13 11:55 runtime_log
[2026-03-13 11:55:14] -rw------- 1 boinc boinc   1105920 Mar 13 11:55 result.tar.gz
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc      8911 Mar 13 11:55 runtime_log.err
[2026-03-13 11:55:14] -rw------- 1 boinc boinc       660 Mar 13 11:55 ebPMDmOOwK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmx2mLDmuwNHBn.diag
[2026-03-13 11:55:14] -rw-r--r-- 1 boinc boinc     12846 Mar 13 11:55 stderr.txt
[2026-03-13 11:55:14] HITS file was successfully produced:
[2026-03-13 11:55:14] -rw------- 1 boinc boinc 199374325 Mar 13 11:54 shared/HITS.pool.root.1
[2026-03-13 11:55:14]  *** Contents of shared directory: ***
[2026-03-13 11:55:15] total 405944
[2026-03-13 11:55:15] -rw-r--r-- 2 boinc boinc 214582257 Mar 13 10:21 ATLAS.root_0
[2026-03-13 11:55:15] -rw-r--r-- 2 boinc boinc    597516 Mar 13 10:21 input.tar.gz
[2026-03-13 11:55:15] -rw-r--r-- 2 boinc boinc     15845 Mar 13 10:21 start_atlas.sh
[2026-03-13 11:55:15] -rw------- 1 boinc boinc 199374325 Mar 13 11:54 HITS.pool.root.1
[2026-03-13 11:55:15] -rw------- 1 boinc boinc   1105920 Mar 13 11:55 result.tar.gz
11:55:16 (3343444): run_atlas exited; CPU time 15945.327043
11:55:16 (3343444): called boinc_finish(0)

</stderr_txt>
]]>

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