Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:34:23 (19497): wrapper (7.7.26015): starting
03:34:23 (19497): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 03:34:23] Arguments: --nthreads 8
[2026-03-13 03:34:23] Threads: 8
[2026-03-13 03:34:23] Checking for CVMFS
[2026-03-13 03:34:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 03:34:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 03:34:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 03:34:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 03:34:31] 2.11.2.0 8264 125523 134232 157223 1 53 20113627 25165825 188 130560 160 43951167 99.805 35419191 1200 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 03:34:31] CVMFS is ok
[2026-03-13 03:34:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 03:34:31] Checking for apptainer binary...
[2026-03-13 03:34:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 03:34:31] Running /usr/bin/apptainer --version
[2026-03-13 03:34:31] apptainer version 1.3.2-1.el7
[2026-03-13 03:34:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 03:35:06] cg-vwn379.simple-grid.lan
[2026-03-13 03:35:06] apptainer works
[2026-03-13 03:35:06] Set ATHENA_PROC_NUMBER=8
[2026-03-13 03:35:06] Set ATHENA_CORE_NUMBER=8
[2026-03-13 03:35:06] Starting ATLAS job with PandaID=7040086191
[2026-03-13 03:35:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 06:57:51]  *** The last 200 lines of the pilot log: ***
[2026-03-13 06:57:51] 2026-03-13 05:56:40,143 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7040086191/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,144 | INFO     | extracted standard info from prmon json
[2026-03-13 06:57:51] 2026-03-13 05:56:40,144 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 06:57:51] 2026-03-13 05:56:40,144 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 06:57:51] 2026-03-13 05:56:40,144 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 06:57:51] 2026-03-13 05:56:40,145 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 06:57:51] 2026-03-13 05:56:40,149 | INFO     | fitting pss+swap vs Time
[2026-03-13 06:57:51] 2026-03-13 05:56:40,149 | INFO     | sum of square deviations: 2060343747.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,151 | INFO     | sum of deviations: 98068436110.5
[2026-03-13 06:57:51] 2026-03-13 05:56:40,151 | INFO     | mean x: 1773375674.5
[2026-03-13 06:57:51] 2026-03-13 05:56:40,151 | INFO     | mean y: 2356594.89893617
[2026-03-13 06:57:51] 2026-03-13 05:56:40,151 | INFO     | intersect: -84406946118.71184
[2026-03-13 06:57:51] 2026-03-13 05:56:40,152 | INFO     | chi2: 8.889311794290505
[2026-03-13 06:57:51] 2026-03-13 05:56:40,152 | INFO     | sum of square deviations: 1900284932.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,154 | INFO     | sum of deviations: 107105161154.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,154 | INFO     | mean x: 1773375522.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,154 | INFO     | mean y: 2364952.4590163934
[2026-03-13 06:57:51] 2026-03-13 05:56:40,154 | INFO     | intersect: -99949841094.065
[2026-03-13 06:57:51] 2026-03-13 05:56:40,154 | INFO     | chi2: 8.218622012116942
[2026-03-13 06:57:51] 2026-03-13 05:56:40,155 | INFO     | current chi2=8.218622012116942 (change=7.544901086767351 %)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,155 | INFO     | right removable region: 182
[2026-03-13 06:57:51] 2026-03-13 05:56:40,155 | INFO     | sum of square deviations: 1900284932.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,157 | INFO     | sum of deviations: 33962404408.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,157 | INFO     | mean x: 1773375827.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,157 | INFO     | mean y: 2417634.650273224
[2026-03-13 06:57:51] 2026-03-13 05:56:40,157 | INFO     | intersect: -31691833048.354908
[2026-03-13 06:57:51] 2026-03-13 05:56:40,157 | INFO     | chi2: 3.568368240864169
[2026-03-13 06:57:51] 2026-03-13 05:56:40,158 | INFO     | current chi2=3.568368240864169 (change=59.85776713157831 %)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,158 | INFO     | sum of square deviations: 1748737904.5
[2026-03-13 06:57:51] 2026-03-13 05:56:40,159 | INFO     | sum of deviations: -13254523836.000002
[2026-03-13 06:57:51] 2026-03-13 05:56:40,159 | INFO     | mean x: 1773375979.5
[2026-03-13 06:57:51] 2026-03-13 05:56:40,160 | INFO     | mean y: 2465050.5393258426
[2026-03-13 06:57:51] 2026-03-13 05:56:40,160 | INFO     | intersect: 13443732681.318584
[2026-03-13 06:57:51] 2026-03-13 05:56:40,160 | INFO     | chi2: 0.9299841225321869
[2026-03-13 06:57:51] 2026-03-13 05:56:40,160 | INFO     | current chi2=0.9299841225321869 (change=73.93811233150736 %)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,161 | INFO     | sum of square deviations: 1605470102.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,162 | INFO     | sum of deviations: -17243965072.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,162 | INFO     | mean x: 1773376132.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,162 | INFO     | mean y: 2469189.514450867
[2026-03-13 06:57:51] 2026-03-13 05:56:40,162 | INFO     | intersect: 19049872215.974834
[2026-03-13 06:57:51] 2026-03-13 05:56:40,163 | INFO     | chi2: 0.8599216151356653
[2026-03-13 06:57:51] 2026-03-13 05:56:40,163 | INFO     | current chi2=0.8599216151356653 (change=7.533731565841509 %)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,163 | INFO     | left removable region: 30
[2026-03-13 06:57:51] 2026-03-13 05:56:40,163 | INFO     | sum of square deviations: 1088905998.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,164 | INFO     | sum of deviations: 1447170222.0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,165 | INFO     | mean x: 1773376406.5
[2026-03-13 06:57:51] 2026-03-13 05:56:40,165 | INFO     | mean y: 2472643.6842105263
[2026-03-13 06:57:51] 2026-03-13 05:56:40,165 | INFO     | intersect: -2354367646.109259
[2026-03-13 06:57:51] 2026-03-13 05:56:40,165 | INFO     | chi2: 0.0001257443851833815
[2026-03-13 06:57:51] 2026-03-13 05:56:40,165 | INFO     | current memory leak: 1.33 B/s (using 152 data points, chi2=0.00)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,166 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,166 | INFO     | ..............................
[2026-03-13 06:57:51] 2026-03-13 05:56:40,166 | INFO     | . Timing measurements:
[2026-03-13 06:57:51] 2026-03-13 05:56:40,167 | INFO     | . get job = 0 s
[2026-03-13 06:57:51] 2026-03-13 05:56:40,167 | INFO     | . initial setup = 109 s
[2026-03-13 06:57:51] 2026-03-13 05:56:40,167 | INFO     | . payload setup = 160 s
[2026-03-13 06:57:51] 2026-03-13 05:56:40,167 | INFO     | . stage-in = 0 s
[2026-03-13 06:57:51] 2026-03-13 05:56:40,167 | INFO     | . payload execution = 11534 s
[2026-03-13 06:57:51] 2026-03-13 05:56:40,167 | INFO     | . stage-out = 4 s
[2026-03-13 06:57:51] 2026-03-13 05:56:40,167 | INFO     | . log creation = 1 s
[2026-03-13 06:57:51] 2026-03-13 05:56:40,167 | INFO     | ..............................
[2026-03-13 06:57:51] 2026-03-13 05:56:40,322 | INFO     | 
[2026-03-13 06:57:51] 2026-03-13 05:56:40,322 | INFO     | job summary report
[2026-03-13 06:57:51] 2026-03-13 05:56:40,322 | INFO     | --------------------------------------------------
[2026-03-13 06:57:51] 2026-03-13 05:56:40,323 | INFO     | PanDA job id: 7040086191
[2026-03-13 06:57:51] 2026-03-13 05:56:40,323 | INFO     | task id: 48700906
[2026-03-13 06:57:51] 2026-03-13 05:56:40,323 | INFO     | errors: (none)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,323 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 06:57:51] 2026-03-13 05:56:40,323 | INFO     | pilot state: finished 
[2026-03-13 06:57:51] 2026-03-13 05:56:40,323 | INFO     | transexitcode: 0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,323 | INFO     | exeerrorcode: 0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,323 | INFO     | exeerrordiag: 
[2026-03-13 06:57:51] 2026-03-13 05:56:40,323 | INFO     | exitcode: 0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,324 | INFO     | exitmsg: OK
[2026-03-13 06:57:51] 2026-03-13 05:56:40,324 | INFO     | cpuconsumptiontime: 42342 s
[2026-03-13 06:57:51] 2026-03-13 05:56:40,324 | INFO     | nevents: 400
[2026-03-13 06:57:51] 2026-03-13 05:56:40,324 | INFO     | neventsw: 0
[2026-03-13 06:57:51] 2026-03-13 05:56:40,324 | INFO     | pid: 27910
[2026-03-13 06:57:51] 2026-03-13 05:56:40,324 | INFO     | pgrp: 27910
[2026-03-13 06:57:51] 2026-03-13 05:56:40,324 | INFO     | corecount: 8
[2026-03-13 06:57:51] 2026-03-13 05:56:40,324 | INFO     | event service: False
[2026-03-13 06:57:51] 2026-03-13 05:56:40,325 | INFO     | sizes: {0: 2279692, 1: 2280153, 12: 2280153, 11699: 2309609, 11704: 2318607, 11705: 2318663, 11708: 2318985}
[2026-03-13 06:57:51] 2026-03-13 05:56:40,325 | INFO     | --------------------------------------------------
[2026-03-13 06:57:51] 2026-03-13 05:56:40,325 | INFO     | 
[2026-03-13 06:57:51] 2026-03-13 05:56:40,325 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-03-13 06:57:51] 2026-03-13 05:56:40,572 | INFO     | time since job start (11720s) is within the limit (349056.0s)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,710 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,710 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,711 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,711 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,711 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,711 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,711 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,711 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,712 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,712 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 06:57:51] 2026-03-13 05:56:40,712 | INFO     | job 7040086191 has completed (purged errors)
[2026-03-13 06:57:51] 2026-03-13 05:56:40,713 | INFO     | overall cleanup function is called
[2026-03-13 06:57:51] 2026-03-13 05:56:41,721 | INFO     | --- collectZombieJob: --- 10, [27910]
[2026-03-13 06:57:51] 2026-03-13 05:56:41,721 | INFO     | zombie collector waiting for pid 27910
[2026-03-13 06:57:51] 2026-03-13 05:56:41,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 06:57:51] 2026-03-13 05:56:41,722 | INFO     | collected zombie processes
[2026-03-13 06:57:51] 2026-03-13 05:56:41,722 | INFO     | will attempt to kill all subprocesses of pid=27910
[2026-03-13 06:57:51] 2026-03-13 05:56:41,810 | INFO     | process IDs to be killed: [27910] (in reverse order)
[2026-03-13 06:57:51] 2026-03-13 05:56:42,617 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 06:57:51] 2026-03-13 05:56:42,617 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 06:57:51] 2026-03-13 05:56:42,619 | INFO     | did not find any defunct processes belonging to 27910
[2026-03-13 06:57:51] 2026-03-13 05:56:42,621 | INFO     | did not find any defunct processes belonging to 27910
[2026-03-13 06:57:51] 2026-03-13 05:56:42,621 | INFO     | ready for new job
[2026-03-13 06:57:51] 2026-03-13 05:56:42,621 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 06:57:51] 2026-03-13 05:56:42,623 | INFO     | **************************************
[2026-03-13 06:57:51] 2026-03-13 05:56:42,623 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 06:57:51] 2026-03-13 05:56:42,623 | INFO     | **************************************
[2026-03-13 06:57:51] 2026-03-13 05:56:42,623 | INFO     | 
[2026-03-13 06:57:51] 2026-03-13 05:56:42,624 | INFO     | pilot is running in a VM
[2026-03-13 06:57:51] 2026-03-13 05:56:42,624 | INFO     | architecture information:
[2026-03-13 06:57:51] 2026-03-13 05:56:42,625 | INFO     | executing command: cat /etc/os-release
[2026-03-13 06:57:51] 2026-03-13 05:56:42,810 | INFO     | cat /etc/os-release:
[2026-03-13 06:57:51] NAME="CentOS Linux"
[2026-03-13 06:57:51] VERSION="7 (Core)"
[2026-03-13 06:57:51] ID="centos"
[2026-03-13 06:57:51] ID_LIKE="rhel fedora"
[2026-03-13 06:57:51] VERSION_ID="7"
[2026-03-13 06:57:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 06:57:51] ANSI_COLOR="0;31"
[2026-03-13 06:57:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 06:57:51] HOME_URL="https://www.centos.org/"
[2026-03-13 06:57:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 06:57:51] 
[2026-03-13 06:57:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 06:57:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 06:57:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 06:57:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 06:57:51] 
[2026-03-13 06:57:51] 2026-03-13 05:56:42,810 | INFO     | **************************************
[2026-03-13 06:57:51] 2026-03-13 05:56:43,313 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-03-13 06:57:51] 2026-03-13 05:56:43,487 | INFO     | sufficient remaining disk space (496405315584 B)
[2026-03-13 06:57:51] 2026-03-13 05:56:43,487 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 06:57:51] 2026-03-13 05:56:43,487 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 06:57:51] 2026-03-13 05:56:43,487 | INFO     | update_server=False
[2026-03-13 06:57:51] 2026-03-13 05:56:43,488 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 06:57:51] 2026-03-13 05:56:43,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 06:57:51] 2026-03-13 05:56:43,900 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-13 06:57:51] 2026-03-13 05:56:43,900 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-13 06:57:51] 2026-03-13 05:56:43,901 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 06:57:51] 2026-03-13 05:56:43,901 | INFO     | will abort loop
[2026-03-13 06:57:51] 2026-03-13 05:56:44,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 06:57:51] 2026-03-13 05:56:44,065 | INFO     | all data control threads have been joined
[2026-03-13 06:57:51] 2026-03-13 05:56:44,085 | INFO     | all payload control threads have been joined
[2026-03-13 06:57:51] 2026-03-13 05:56:44,474 | INFO     | all job control threads have been joined
[2026-03-13 06:57:51] 2026-03-13 05:56:44,493 | INFO     | [job] retrieve thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:44,538 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:44,889 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:44,906 | INFO     | [job] job monitor thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:45,071 | INFO     | [data] control thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:45,091 | INFO     | [payload] control thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:45,194 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:45,255 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:45,337 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 06:57:51] 2026-03-13 05:56:45,360 | INFO     | [data] copytool_in thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:45,433 | INFO     | [job] validate thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:45,480 | INFO     | [job] control thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:45,498 | INFO     | [data] copytool_out thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:45,513 | INFO     | [payload] failed_post thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:45,587 | INFO     | [payload] validate_post thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:46,343 | INFO     | [job] queue monitor thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:56:48,010 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 06:57:51] 2026-03-13 05:57:13,684 | INFO     | PID=23475 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 06:57:51] 2026-03-13 05:57:13,684 | INFO     | .. there are 2 such processes running
[2026-03-13 06:57:51] 2026-03-13 05:57:13,684 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 06:57:51] 2026-03-13 05:57:13,684 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 06:57:51] 2026-03-13 05:57:13,684 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 06:57:51] 2026-03-13 05:57:39,501 | INFO     | [monitor] cgroup control has ended
[2026-03-13 06:57:51] 2026-03-13 05:57:41,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314853898048)>', '<ExcThread(monitor, started 140314266285824)>']
[2026-03-13 06:57:51] 2026-03-13 05:57:41,852 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 06:57:51] 2026-03-13 05:57:41,852 | INFO     | [monitor] control thread has ended
[2026-03-13 06:57:51] 2026-03-13 05:57:46,155 | INFO     | all workflow threads have been joined
[2026-03-13 06:57:51] 2026-03-13 05:57:46,156 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 06:57:51] 2026-03-13 05:57:46,156 | INFO     | traces error code: 0
[2026-03-13 06:57:51] 2026-03-13 05:57:46,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 06:57:51] 2026-03-13 05:57:46,496 [wrapper] ==== pilot stdout END ====
[2026-03-13 06:57:51] 2026-03-13 05:57:46,605 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 06:57:51] 2026-03-13 05:57:46,714 [wrapper] pilotpid: 23475
[2026-03-13 06:57:51] 2026-03-13 05:57:46,819 [wrapper] Pilot exit status: 0
[2026-03-13 06:57:51] 2026-03-13 05:57:47,361 [wrapper] pandaids: 7040086191
[2026-03-13 06:57:51] 2026-03-13 05:57:48,614 [wrapper] cleanup supervisor_pilot  1346 23476
[2026-03-13 06:57:51] 2026-03-13 05:57:48,712 [wrapper] Test setup, not cleaning
[2026-03-13 06:57:51] 2026-03-13 05:57:48,819 [wrapper] apfmon messages muted
[2026-03-13 06:57:51] 2026-03-13 05:57:48,886 [wrapper] ==== wrapper stdout END ====
[2026-03-13 06:57:51] 2026-03-13 05:57:48,991 [wrapper] ==== wrapper stderr END ====
[2026-03-13 06:57:52]  *** Error codes and diagnostics ***
[2026-03-13 06:57:52]     "exeErrorCode": 0,
[2026-03-13 06:57:52]     "exeErrorDiag": "",
[2026-03-13 06:57:52]     "pilotErrorCode": 0,
[2026-03-13 06:57:52]     "pilotErrorDiag": "",
[2026-03-13 06:57:52]  *** Listing of results directory ***
[2026-03-13 06:57:52] total 332252
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc    584627 Mar  4 13:56 pilot3.tar.gz
[2026-03-13 06:57:52] -rwx------. 1 boinc boinc     36322 Mar  4 14:57 runpilot2-wrapper.sh
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc      5111 Mar  4 14:57 queuedata.json
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc       100 Mar 13 03:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 06:57:52] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 03:34 run_atlas
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc       105 Mar 13 03:34 job.xml
[2026-03-13 06:57:52] -rw-r--r--. 2 boinc boinc 188602662 Mar 13 03:34 EVNT.48700904._000139.pool.root.1
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc      6391 Mar 13 03:34 init_data.xml
[2026-03-13 06:57:52] -rw-r--r--. 2 boinc boinc     15845 Mar 13 03:34 start_atlas.sh
[2026-03-13 06:57:52] drwxrwx--x. 2 boinc boinc        68 Mar 13 03:34 shared
[2026-03-13 06:57:52] -rw-r--r--. 2 boinc boinc    597936 Mar 13 03:34 input.tar.gz
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc         0 Mar 13 03:34 boinc_lockfile
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc      2520 Mar 13 03:35 pandaJob.out
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc       415 Mar 13 03:41 workernode_map.json
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc   1006522 Mar 13 03:41 agis_schedconf.cvmfs.json
[2026-03-13 06:57:52] drwx------. 5 boinc boinc      4096 Mar 13 03:41 pilot3
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc 143519300 Mar 13 06:55 HITS.48700906._003366.pool.root.1
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc       531 Mar 13 06:55 boinc_task_state.xml
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc        95 Mar 13 06:56 pilot_heartbeat.json
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc      1012 Mar 13 06:56 memory_monitor_summary.json
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc   1511578 Mar 13 06:56 agis_ddmendpoints.agis.ALL.json
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc    431748 Mar 13 06:56 log.48700906._003366.job.log.tgz.1
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc      6314 Mar 13 06:56 heartbeat.json
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc        28 Mar 13 06:57 wrapper_checkpoint.txt
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc      8192 Mar 13 06:57 boinc_mmap_file
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc      5066 Mar 13 06:57 pilotlog.txt
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc   1660463 Mar 13 06:57 log.48700906._003366.job.log.1
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc       357 Mar 13 06:57 output.list
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc       620 Mar 13 06:57 runtime_log
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc   2109440 Mar 13 06:57 result.tar.gz
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc      8816 Mar 13 06:57 runtime_log.err
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc       654 Mar 13 06:57 KSzLDmlu1H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm1WKLDmq2Kz7m.diag
[2026-03-13 06:57:52] -rw-r--r--. 1 boinc boinc     20653 Mar 13 06:57 stderr.txt
[2026-03-13 06:57:52] HITS file was successfully produced:
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc 143519300 Mar 13 06:55 shared/HITS.pool.root.1
[2026-03-13 06:57:52]  *** Contents of shared directory: ***
[2026-03-13 06:57:52] total 327000
[2026-03-13 06:57:52] -rw-r--r--. 2 boinc boinc 188602662 Mar 13 03:34 ATLAS.root_0
[2026-03-13 06:57:52] -rw-r--r--. 2 boinc boinc     15845 Mar 13 03:34 start_atlas.sh
[2026-03-13 06:57:52] -rw-r--r--. 2 boinc boinc    597936 Mar 13 03:34 input.tar.gz
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc 143519300 Mar 13 06:55 HITS.pool.root.1
[2026-03-13 06:57:52] -rw-------. 1 boinc boinc   2109440 Mar 13 06:57 result.tar.gz
06:57:53 (19497): run_atlas exited; CPU time 42468.515949
06:57:53 (19497): called boinc_finish(0)

</stderr_txt>
]]>

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