Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:34:49 (1702935): wrapper (7.7.26015): starting
12:34:49 (1702935): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 12:34:49] Arguments: --nthreads 4
[2026-03-14 12:34:49] Threads: 4
[2026-03-14 12:34:49] Checking for CVMFS
[2026-03-14 12:34:49] No cvmfs_config command found, will try listing directly
[2026-03-14 12:34:49] CVMFS is ok
[2026-03-14 12:34:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 12:34:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 12:34:49] Further information can be found at the LHC@home message board.
[2026-03-14 12:34:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 12:34:49] Checking for apptainer binary...
[2026-03-14 12:34:49] which: no apptainer in ((null))
[2026-03-14 12:34:49] apptainer is not installed, using version from CVMFS
[2026-03-14 12:34:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 12:34:49] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot204/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-14 12:34:49] apptainer works
[2026-03-14 12:34:49] Set ATHENA_PROC_NUMBER=4
[2026-03-14 12:34:49] Set ATHENA_CORE_NUMBER=4
[2026-03-14 12:34:49] Starting ATLAS job with PandaID=7051653064
[2026-03-14 12:34:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot204/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 15:44:27]  *** The last 200 lines of the pilot log: ***
[2026-03-14 15:44:27] 2026-03-14 14:43:21,580 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 15:44:27] 2026-03-14 14:43:21,580 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 15:44:27] 2026-03-14 14:43:21,580 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 15:44:27] 2026-03-14 14:43:21,582 | INFO     | fitting pss+swap vs Time
[2026-03-14 15:44:27] 2026-03-14 14:43:21,583 | INFO     | sum of square deviations: 1963274020.0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,583 | INFO     | sum of deviations: 20240480943.0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,583 | INFO     | mean x: 1773493736.0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,583 | INFO     | mean y: 2332902.6162162162
[2026-03-14 15:44:27] 2026-03-14 14:43:21,583 | INFO     | intersect: -18281597817.374607
[2026-03-14 15:44:27] 2026-03-14 14:43:21,584 | INFO     | chi2: 1.094650037978853
[2026-03-14 15:44:27] 2026-03-14 14:43:21,584 | INFO     | sum of square deviations: 1808350185.0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,584 | INFO     | sum of deviations: 19493593374.499996
[2026-03-14 15:44:27] 2026-03-14 14:43:21,584 | INFO     | mean x: 1773493583.5
[2026-03-14 15:44:27] 2026-03-14 14:43:21,584 | INFO     | mean y: 2332167.238888889
[2026-03-14 15:44:27] 2026-03-14 14:43:21,584 | INFO     | intersect: -19115515169.964695
[2026-03-14 15:44:27] 2026-03-14 14:43:21,585 | INFO     | chi2: 1.0952806929903147
[2026-03-14 15:44:27] 2026-03-14 14:43:21,585 | INFO     | current chi2=1.0952806929903147 (change=-0.05761247792272293 %)
[2026-03-14 15:44:27] 2026-03-14 14:43:21,585 | INFO     | right removable region: 179
[2026-03-14 15:44:27] 2026-03-14 14:43:21,585 | INFO     | sum of square deviations: 1808350185.0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,585 | INFO     | sum of deviations: 1718809413.5000002
[2026-03-14 15:44:27] 2026-03-14 14:43:21,585 | INFO     | mean x: 1773493888.5
[2026-03-14 15:44:27] 2026-03-14 14:43:21,585 | INFO     | mean y: 2350835.827777778
[2026-03-14 15:44:27] 2026-03-14 14:43:21,585 | INFO     | intersect: -1683328196.7090092
[2026-03-14 15:44:27] 2026-03-14 14:43:21,586 | INFO     | chi2: 0.0012628552847107955
[2026-03-14 15:44:27] 2026-03-14 14:43:21,586 | INFO     | current chi2=0.0012628552847107955 (change=99.8846338792403 %)
[2026-03-14 15:44:27] 2026-03-14 14:43:21,586 | INFO     | sum of square deviations: 1661798600.0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,586 | INFO     | sum of deviations: 1267721825.0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,586 | INFO     | mean x: 1773494041.0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,586 | INFO     | mean y: 2351301.3314285716
[2026-03-14 15:44:27] 2026-03-14 14:43:21,586 | INFO     | intersect: -1350578651.9632394
[2026-03-14 15:44:27] 2026-03-14 14:43:21,587 | INFO     | chi2: 0.001018814358721173
[2026-03-14 15:44:27] 2026-03-14 14:43:21,587 | INFO     | current chi2=0.001018814358721173 (change=19.324536147901533 %)
[2026-03-14 15:44:27] 2026-03-14 14:43:21,587 | INFO     | left removable region: 20
[2026-03-14 15:44:27] 2026-03-14 14:43:21,587 | INFO     | sum of square deviations: 1246386160.0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,591 | INFO     | sum of deviations: 814543187.0000001
[2026-03-14 15:44:27] 2026-03-14 14:43:21,591 | INFO     | mean x: 1773494163.0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,591 | INFO     | mean y: 2351240.1257861634
[2026-03-14 15:44:27] 2026-03-14 14:43:21,591 | INFO     | intersect: -1156669642.821051
[2026-03-14 15:44:27] 2026-03-14 14:43:21,591 | INFO     | chi2: 0.0009144400303727633
[2026-03-14 15:44:27] 2026-03-14 14:43:21,591 | INFO     | current memory leak: 0.65 B/s (using 159 data points, chi2=0.00)
[2026-03-14 15:44:27] 2026-03-14 14:43:21,591 | INFO     | could have reported an average CPU frequency of 3565 MHz (10 samples)
[2026-03-14 15:44:27] 2026-03-14 14:43:21,592 | INFO     | ..............................
[2026-03-14 15:44:27] 2026-03-14 14:43:21,592 | INFO     | . Timing measurements:
[2026-03-14 15:44:27] 2026-03-14 14:43:21,592 | INFO     | . get job = 0 s
[2026-03-14 15:44:27] 2026-03-14 14:43:21,592 | INFO     | . initial setup = 5 s
[2026-03-14 15:44:27] 2026-03-14 14:43:21,592 | INFO     | . payload setup = 5 s
[2026-03-14 15:44:27] 2026-03-14 14:43:21,592 | INFO     | . stage-in = 0 s
[2026-03-14 15:44:27] 2026-03-14 14:43:21,592 | INFO     | . payload execution = 11275 s
[2026-03-14 15:44:27] 2026-03-14 14:43:21,592 | INFO     | . stage-out = 0 s
[2026-03-14 15:44:27] 2026-03-14 14:43:21,592 | INFO     | . log creation = 0 s
[2026-03-14 15:44:27] 2026-03-14 14:43:21,592 | INFO     | ..............................
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | 
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | job summary report
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | --------------------------------------------------
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | PanDA job id: 7051653064
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | task id: 48967067
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | errors: (none)
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | pilot state: finished 
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | transexitcode: 0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | exeerrorcode: 0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | exeerrordiag: 
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | exitcode: 0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | exitmsg: OK
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | cpuconsumptiontime: 43682 s
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | nevents: 400
[2026-03-14 15:44:27] 2026-03-14 14:43:21,641 | INFO     | neventsw: 0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,642 | INFO     | pid: 1713909
[2026-03-14 15:44:27] 2026-03-14 14:43:21,642 | INFO     | pgrp: 1713909
[2026-03-14 15:44:27] 2026-03-14 14:43:21,642 | INFO     | corecount: 4
[2026-03-14 15:44:27] 2026-03-14 14:43:21,642 | INFO     | event service: False
[2026-03-14 15:44:27] 2026-03-14 14:43:21,642 | INFO     | sizes: {0: 2280292, 11: 2280292, 11284: 2309578, 11285: 2318656, 11287: 2318794}
[2026-03-14 15:44:27] 2026-03-14 14:43:21,642 | INFO     | --------------------------------------------------
[2026-03-14 15:44:27] 2026-03-14 14:43:21,642 | INFO     | 
[2026-03-14 15:44:27] 2026-03-14 14:43:21,642 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot204/slots/0
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,662 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | job 7051653064 has completed (purged errors)
[2026-03-14 15:44:27] 2026-03-14 14:43:21,663 | INFO     | overall cleanup function is called
[2026-03-14 15:44:27] 2026-03-14 14:43:22,669 | INFO     | --- collectZombieJob: --- 10, [1713909]
[2026-03-14 15:44:27] 2026-03-14 14:43:22,670 | INFO     | zombie collector waiting for pid 1713909
[2026-03-14 15:44:27] 2026-03-14 14:43:22,670 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 15:44:27] 2026-03-14 14:43:22,670 | INFO     | collected zombie processes
[2026-03-14 15:44:27] 2026-03-14 14:43:22,670 | INFO     | will attempt to kill all subprocesses of pid=1713909
[2026-03-14 15:44:27] 2026-03-14 14:43:22,857 | WARNING  | process 1713909 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 15:44:27] 2026-03-14 14:43:24,181 | INFO     | using path: /var/lib/boinc/var/slot204/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 15:44:27] 2026-03-14 14:43:24,181 | INFO     | using path: /var/lib/boinc/var/slot204/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 15:44:27] 2026-03-14 14:43:24,181 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-14 15:44:27] 2026-03-14 14:43:24,182 | WARNING  | maxPSS not found in memory monitor output
[2026-03-14 15:44:27] 2026-03-14 14:43:24,182 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot204/slots/0/PanDA_Pilot-7051653064/payload.stdout) since it has not been created yet
[2026-03-14 15:44:27] 2026-03-14 14:43:24,182 | INFO     | executing command: df -mP /var/lib/boinc/var/slot204/slots/0
[2026-03-14 15:44:27] 2026-03-14 14:43:24,199 | INFO     | sufficient remaining disk space (19934478336 B)
[2026-03-14 15:44:27] 2026-03-14 14:43:24,200 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-14 15:44:27] 2026-03-14 14:43:24,200 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot204/slots/0/PanDA_Pilot-7051653064/HITS.48967067._002074.pool.root.1 since it does not exist
[2026-03-14 15:44:27] 2026-03-14 14:43:24,327 | INFO     | process IDs to be killed: [1713909] (in reverse order)
[2026-03-14 15:44:27] 2026-03-14 14:43:24,568 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 15:44:27] 2026-03-14 14:43:24,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 15:44:27] 2026-03-14 14:43:24,633 | INFO     | did not find any defunct processes belonging to 1713909
[2026-03-14 15:44:27] 2026-03-14 14:43:24,692 | INFO     | did not find any defunct processes belonging to 1713909
[2026-03-14 15:44:27] 2026-03-14 14:43:24,692 | INFO     | ready for new job
[2026-03-14 15:44:27] 2026-03-14 14:43:24,692 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 15:44:27] 2026-03-14 14:43:24,693 | INFO     | **************************************
[2026-03-14 15:44:27] 2026-03-14 14:43:24,694 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 15:44:27] 2026-03-14 14:43:24,694 | INFO     | **************************************
[2026-03-14 15:44:27] 2026-03-14 14:43:24,694 | INFO     | 
[2026-03-14 15:44:27] 2026-03-14 14:43:24,703 | INFO     | architecture information:
[2026-03-14 15:44:27] 2026-03-14 14:43:24,704 | INFO     | executing command: cat /etc/os-release
[2026-03-14 15:44:27] 2026-03-14 14:43:24,717 | INFO     | cat /etc/os-release:
[2026-03-14 15:44:27] NAME="CentOS Linux"
[2026-03-14 15:44:27] VERSION="7 (Core)"
[2026-03-14 15:44:27] ID="centos"
[2026-03-14 15:44:27] ID_LIKE="rhel fedora"
[2026-03-14 15:44:27] VERSION_ID="7"
[2026-03-14 15:44:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 15:44:27] ANSI_COLOR="0;31"
[2026-03-14 15:44:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 15:44:27] HOME_URL="https://www.centos.org/"
[2026-03-14 15:44:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 15:44:27] 
[2026-03-14 15:44:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 15:44:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 15:44:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 15:44:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 15:44:27] 
[2026-03-14 15:44:27] 2026-03-14 14:43:24,717 | INFO     | **************************************
[2026-03-14 15:44:27] 2026-03-14 14:43:24,863 | INFO     | number of running child processes to parent process 1713909: 1
[2026-03-14 15:44:27] 2026-03-14 14:43:24,863 | INFO     | maximum number of monitored processes: 6
[2026-03-14 15:44:27] 2026-03-14 14:43:24,863 | INFO     | aborting job monitoring since job object (job id=7051653064) has expired
[2026-03-14 15:44:27] 2026-03-14 14:43:25,220 | INFO     | executing command: df -mP /var/lib/boinc/var/slot204/slots/0
[2026-03-14 15:44:27] 2026-03-14 14:43:25,230 | INFO     | sufficient remaining disk space (19931332608 B)
[2026-03-14 15:44:27] 2026-03-14 14:43:25,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 15:44:27] 2026-03-14 14:43:25,231 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 15:44:27] 2026-03-14 14:43:25,231 | INFO     | update_server=False
[2026-03-14 15:44:27] 2026-03-14 14:43:25,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 15:44:27] 2026-03-14 14:43:25,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 15:44:27] 2026-03-14 14:43:25,232 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 15:44:27] 2026-03-14 14:43:25,232 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 15:44:27] 2026-03-14 14:43:25,233 | INFO     | will abort loop
[2026-03-14 15:44:27] 2026-03-14 14:43:25,274 | INFO     | all job control threads have been joined
[2026-03-14 15:44:27] 2026-03-14 14:43:25,393 | INFO     | all payload control threads have been joined
[2026-03-14 15:44:27] 2026-03-14 14:43:25,394 | INFO     | all data control threads have been joined
[2026-03-14 15:44:27] 2026-03-14 14:43:26,239 | INFO     | [job] retrieve thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:26,239 | INFO     | [job] job monitor thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:26,244 | INFO     | [data] copytool_in thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:26,281 | INFO     | [job] control thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:26,330 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:26,398 | INFO     | [payload] control thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:26,399 | INFO     | [data] control thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:26,651 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 15:44:27] 2026-03-14 14:43:26,885 | INFO     | [payload] validate_post thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:27,115 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:27,239 | INFO     | [data] copytool_out thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:27,253 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:27,394 | INFO     | [job] validate thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:27,428 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:27,657 | INFO     | [job] queue monitor thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:27,748 | INFO     | [payload] failed_post thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:29,240 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 15:44:27] 2026-03-14 14:43:52,251 | INFO     | 11304s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-14 15:44:27] 2026-03-14 14:43:53,846 | INFO     | PID=1707824 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-14 15:44:27] 2026-03-14 14:43:53,846 | INFO     | .. there are 47 such processes running
[2026-03-14 15:44:27] 2026-03-14 14:43:53,846 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 15:44:27] 2026-03-14 14:43:53,846 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 15:44:27] 2026-03-14 14:43:53,846 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 15:44:27] 2026-03-14 14:44:21,338 | INFO     | [monitor] cgroup control has ended
[2026-03-14 15:44:27] 2026-03-14 14:44:21,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22377234696000)>', '<ExcThread(monitor, started 22376994842368)>']
[2026-03-14 15:44:27] 2026-03-14 14:44:21,984 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 15:44:27] 2026-03-14 14:44:21,985 | INFO     | [monitor] control thread has ended
[2026-03-14 15:44:27] 2026-03-14 14:44:26,879 | INFO     | all workflow threads have been joined
[2026-03-14 15:44:27] 2026-03-14 14:44:26,880 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 15:44:27] 2026-03-14 14:44:26,880 | INFO     | traces error code: 0
[2026-03-14 15:44:27] 2026-03-14 14:44:26,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 15:44:27] 2026-03-14 14:44:27,046 [wrapper] ==== pilot stdout END ====
[2026-03-14 15:44:27] 2026-03-14 14:44:27,049 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 15:44:27] 2026-03-14 14:44:27,052 [wrapper] pilotpid: 1707824
[2026-03-14 15:44:27] 2026-03-14 14:44:27,054 [wrapper] Pilot exit status: 0
[2026-03-14 15:44:27] 2026-03-14 14:44:27,063 [wrapper] pandaids: 7051653064
[2026-03-14 15:44:27] 2026-03-14 14:44:27,196 [wrapper] cleanup supervisor_pilot 3279095 1707825
[2026-03-14 15:44:27] 2026-03-14 14:44:27,201 [wrapper] Test setup, not cleaning
[2026-03-14 15:44:27] 2026-03-14 14:44:27,203 [wrapper] apfmon messages muted
[2026-03-14 15:44:27] 2026-03-14 14:44:27,206 [wrapper] ==== wrapper stdout END ====
[2026-03-14 15:44:27] 2026-03-14 14:44:27,208 [wrapper] ==== wrapper stderr END ====
[2026-03-14 15:44:27]  *** Error codes and diagnostics ***
[2026-03-14 15:44:27]     "exeErrorCode": 0,
[2026-03-14 15:44:27]     "exeErrorDiag": "",
[2026-03-14 15:44:27]     "pilotErrorCode": 0,
[2026-03-14 15:44:27]     "pilotErrorDiag": "",
[2026-03-14 15:44:27]  *** Listing of results directory ***
[2026-03-14 15:44:27] total 510956
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc      5111 Mar 12 11:21 queuedata.json
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc    585013 Mar 12 11:21 pilot3.tar.gz
[2026-03-14 15:44:27] -rwx------. 1 boinc boinc     36322 Mar 12 11:21 runpilot2-wrapper.sh
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc       100 Mar 14 12:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 15:44:27] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 12:34 run_atlas
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc       105 Mar 14 12:34 job.xml
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc      6709 Mar 14 12:34 init_data.xml
[2026-03-14 15:44:27] -rw-r--r--. 2 boinc boinc 240110664 Mar 14 12:34 EVNT.48967065._000081.pool.root.1
[2026-03-14 15:44:27] -rw-r--r--. 2 boinc boinc     15845 Mar 14 12:34 start_atlas.sh
[2026-03-14 15:44:27] drwxrwx--x. 2 boinc boinc      4096 Mar 14 12:34 shared
[2026-03-14 15:44:27] -rw-r--r--. 2 boinc boinc    597547 Mar 14 12:34 input.tar.gz
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc         0 Mar 14 12:34 boinc_lockfile
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc      2614 Mar 14 12:34 pandaJob.out
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc   1004579 Mar 14 12:34 agis_schedconf.cvmfs.json
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc       444 Mar 14 12:35 workernode_map.json
[2026-03-14 15:44:27] drwx------. 5 boinc boinc      4096 Mar 14 12:35 pilot3
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc 275248417 Mar 14 15:42 HITS.48967067._002074.pool.root.1
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc       530 Mar 14 15:42 boinc_task_state.xml
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc      1045 Mar 14 15:43 memory_monitor_summary.json
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc        95 Mar 14 15:43 pilot_heartbeat.json
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc   1511579 Mar 14 15:43 agis_ddmendpoints.agis.ALL.json
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc    371335 Mar 14 15:43 log.48967067._002074.job.log.tgz.1
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc      6354 Mar 14 15:43 heartbeat.json
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc      8192 Mar 14 15:44 boinc_mmap_file
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc        28 Mar 14 15:44 wrapper_checkpoint.txt
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc      5237 Mar 14 15:44 pilotlog.txt
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc   1589419 Mar 14 15:44 log.48967067._002074.job.log.1
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc       357 Mar 14 15:44 output.list
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc       620 Mar 14 15:44 runtime_log
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc   1976320 Mar 14 15:44 result.tar.gz
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc      9222 Mar 14 15:44 runtime_log.err
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc       665 Mar 14 15:44 noWMDmcLsK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmkpjLDmDtCEUm.diag
[2026-03-14 15:44:27] -rw-r--r--. 1 boinc boinc     21327 Mar 14 15:44 stderr.txt
[2026-03-14 15:44:27] HITS file was successfully produced:
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc 275248417 Mar 14 15:42 shared/HITS.pool.root.1
[2026-03-14 15:44:27]  *** Contents of shared directory: ***
[2026-03-14 15:44:27] total 505824
[2026-03-14 15:44:27] -rw-r--r--. 2 boinc boinc 240110664 Mar 14 12:34 ATLAS.root_0
[2026-03-14 15:44:27] -rw-r--r--. 2 boinc boinc     15845 Mar 14 12:34 start_atlas.sh
[2026-03-14 15:44:27] -rw-r--r--. 2 boinc boinc    597547 Mar 14 12:34 input.tar.gz
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc 275248417 Mar 14 15:42 HITS.pool.root.1
[2026-03-14 15:44:27] -rw-------. 1 boinc boinc   1976320 Mar 14 15:44 result.tar.gz
15:44:29 (1702935): run_atlas exited; CPU time 44232.093477
15:44:29 (1702935): called boinc_finish(0)

</stderr_txt>
]]>

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