Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:03:15 (1461226): wrapper (7.7.26015): starting
05:03:15 (1461226): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 05:03:15] Arguments: --nthreads 3
[2026-03-13 05:03:15] Threads: 3
[2026-03-13 05:03:15] Checking for CVMFS
[2026-03-13 05:03:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 05:03:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 05:03:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 05:03:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 05:03:15] 2.9.2.0 2437992 22360 92036 157225 1 50 30521027 36864001 0 130560 0 9083050 99.982 844908 12574 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 05:03:15] CVMFS is ok
[2026-03-13 05:03:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 05:03:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 05:03:15] Further information can be found at the LHC@home message board.
[2026-03-13 05:03:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 05:03:15] Checking for apptainer binary...
[2026-03-13 05:03:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 05:03:15] Running /usr/bin/apptainer --version
[2026-03-13 05:03:15] apptainer version 1.4.1-1.1
[2026-03-13 05:03:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 05:03:15] atlasA303a
[2026-03-13 05:03:15] apptainer works
[2026-03-13 05:03:15] Set ATHENA_PROC_NUMBER=3
[2026-03-13 05:03:15] Set ATHENA_CORE_NUMBER=3
[2026-03-13 05:03:15] Starting ATLAS job with PandaID=7043207355
[2026-03-13 05:03:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 06:17:36]  *** The last 200 lines of the pilot log: ***
[2026-03-13 06:17:36] 2026-03-13 05:17:05,263 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 06:17:36] 2026-03-13 05:17:05,263 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 06:17:36] 2026-03-13 05:17:05,263 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 06:17:36] 2026-03-13 05:17:05,263 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 06:17:36] 2026-03-13 05:17:05,263 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 06:17:36] 2026-03-13 05:17:05,263 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 06:17:36] 2026-03-13 05:17:05,263 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 06:17:36] 2026-03-13 05:17:05,263 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 06:17:36] 2026-03-13 05:17:05,263 | INFO     | job 7043207355 has completed (purged errors)
[2026-03-13 06:17:36] 2026-03-13 05:17:05,263 | INFO     | overall cleanup function is called
[2026-03-13 06:17:36] 2026-03-13 05:17:06,246 | INFO     | PID=1465266 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 06:17:36] 2026-03-13 05:17:06,269 | INFO     | --- collectZombieJob: --- 10, [1469695]
[2026-03-13 06:17:36] 2026-03-13 05:17:06,269 | INFO     | zombie collector waiting for pid 1469695
[2026-03-13 06:17:36] 2026-03-13 05:17:06,269 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 06:17:36] 2026-03-13 05:17:06,270 | INFO     | collected zombie processes
[2026-03-13 06:17:36] 2026-03-13 05:17:06,270 | INFO     | will attempt to kill all subprocesses of pid=1469695
[2026-03-13 06:17:36] 2026-03-13 05:17:06,309 | INFO     | process IDs to be killed: [1469695] (in reverse order)
[2026-03-13 06:17:36] 2026-03-13 05:17:06,335 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 06:17:36] 2026-03-13 05:17:06,335 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 06:17:36] 2026-03-13 05:17:06,336 | INFO     | did not find any defunct processes belonging to 1469695
[2026-03-13 06:17:36] 2026-03-13 05:17:06,337 | INFO     | did not find any defunct processes belonging to 1469695
[2026-03-13 06:17:36] 2026-03-13 05:17:06,337 | INFO     | ready for new job
[2026-03-13 06:17:36] 2026-03-13 05:17:06,337 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 06:17:36] 2026-03-13 05:17:06,338 | INFO     | **************************************
[2026-03-13 06:17:36] 2026-03-13 05:17:06,338 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 06:17:36] 2026-03-13 05:17:06,338 | INFO     | **************************************
[2026-03-13 06:17:36] 2026-03-13 05:17:06,338 | INFO     | 
[2026-03-13 06:17:36] 2026-03-13 05:17:06,339 | INFO     | architecture information:
[2026-03-13 06:17:36] 2026-03-13 05:17:06,339 | INFO     | executing command: cat /etc/os-release
[2026-03-13 06:17:36] 2026-03-13 05:17:06,348 | INFO     | cat /etc/os-release:
[2026-03-13 06:17:36] NAME="CentOS Linux"
[2026-03-13 06:17:36] VERSION="7 (Core)"
[2026-03-13 06:17:36] ID="centos"
[2026-03-13 06:17:36] ID_LIKE="rhel fedora"
[2026-03-13 06:17:36] VERSION_ID="7"
[2026-03-13 06:17:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 06:17:36] ANSI_COLOR="0;31"
[2026-03-13 06:17:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 06:17:36] HOME_URL="https://www.centos.org/"
[2026-03-13 06:17:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 06:17:36] 
[2026-03-13 06:17:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 06:17:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 06:17:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 06:17:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 06:17:36] 
[2026-03-13 06:17:36] 2026-03-13 05:17:06,348 | INFO     | **************************************
[2026-03-13 06:17:36] 2026-03-13 05:17:06,852 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 06:17:36] 2026-03-13 05:17:06,865 | INFO     | sufficient remaining disk space (372140670976 B)
[2026-03-13 06:17:36] 2026-03-13 05:17:06,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 06:17:36] 2026-03-13 05:17:06,866 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 06:17:36] 2026-03-13 05:17:06,866 | INFO     | update_server=False
[2026-03-13 06:17:36] 2026-03-13 05:17:06,866 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 06:17:36] 2026-03-13 05:17:06,866 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-13 06:17:36] 2026-03-13 05:17:06,866 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 06:17:36] 2026-03-13 05:17:06,866 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 06:17:36] 2026-03-13 05:17:06,866 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 06:17:36] 2026-03-13 05:17:06,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 06:17:36] 2026-03-13 05:17:06,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 06:17:36] 2026-03-13 05:17:07,185 | INFO     | all data control threads have been joined
[2026-03-13 06:17:36] 2026-03-13 05:17:07,590 | INFO     | all payload control threads have been joined
[2026-03-13 06:17:36] 2026-03-13 05:17:07,595 | INFO     | all job control threads have been joined
[2026-03-13 06:17:36] 2026-03-13 05:17:07,778 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 06:17:36] 2026-03-13 05:17:07,778 | INFO     | aborting loop
[2026-03-13 06:17:36] 2026-03-13 05:17:07,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 06:17:36] 2026-03-13 05:17:07,871 | INFO     | [job] retrieve thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:07,872 | INFO     | [job] queue monitor thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:08,190 | INFO     | [data] control thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:08,545 | INFO     | [job] validate thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:08,592 | INFO     | [payload] control thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:08,601 | INFO     | [job] control thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:08,609 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:08,616 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:08,776 | INFO     | [data] copytool_in thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:08,784 | INFO     | [job] job monitor thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:08,789 | INFO     | [payload] failed_post thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:08,796 | INFO     | job.realtimelogging is not enabled
[2026-03-13 06:17:36] 2026-03-13 05:17:09,032 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:09,462 | INFO     | [payload] validate_post thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:09,801 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:09,872 | INFO     | [data] copytool_out thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:10,873 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 06:17:36] 2026-03-13 05:17:30,521 | INFO     | [monitor] cgroup control has ended
[2026-03-13 06:17:36] 2026-03-13 05:17:31,596 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620634015552)>', '<ExcThread(monitor, started 140619703904000)>']
[2026-03-13 06:17:36] 2026-03-13 05:17:31,999 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 06:17:36] 2026-03-13 05:17:31,999 | INFO     | [monitor] control thread has ended
[2026-03-13 06:17:36] 2026-03-13 05:17:36,610 | INFO     | all workflow threads have been joined
[2026-03-13 06:17:36] 2026-03-13 05:17:36,611 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 06:17:36] 2026-03-13 05:17:36,611 | INFO     | traces error code: 0
[2026-03-13 06:17:36] 2026-03-13 05:17:36,611 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 06:17:36] 2026-03-13 05:17:36,660 [wrapper] ==== pilot stdout END ====
[2026-03-13 06:17:36] 2026-03-13 05:17:36,663 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 06:17:36] 2026-03-13 05:17:36,665 [wrapper] pilotpid: 1465266
[2026-03-13 06:17:36] 2026-03-13 05:17:36,668 [wrapper] Pilot exit status: 0
[2026-03-13 06:17:36] 2026-03-13 05:17:36,675 [wrapper] pandaids: 7043207355
[2026-03-13 06:17:36] 2026-03-13 05:17:36,692 [wrapper] cleanup supervisor_pilot 1474659 1465267
[2026-03-13 06:17:36] 2026-03-13 05:17:36,695 [wrapper] Test setup, not cleaning
[2026-03-13 06:17:36] 2026-03-13 05:17:36,697 [wrapper] apfmon messages muted
[2026-03-13 06:17:36] 2026-03-13 05:17:36,700 [wrapper] ==== wrapper stdout END ====
[2026-03-13 06:17:36] 2026-03-13 05:17:36,702 [wrapper] ==== wrapper stderr END ====
[2026-03-13 06:17:36]  *** Error codes and diagnostics ***
[2026-03-13 06:17:36]     "exeErrorCode": 0,
[2026-03-13 06:17:36]     "exeErrorDiag": "",
[2026-03-13 06:17:36]     "pilotErrorCode": 0,
[2026-03-13 06:17:36]     "pilotErrorDiag": "",
[2026-03-13 06:17:36]  *** Listing of results directory ***
[2026-03-13 06:17:36] total 611672
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc    585013 Mar 12 11:21 pilot3.tar.gz
[2026-03-13 06:17:36] -rwx------ 1 boinc boinc     36322 Mar 12 11:21 runpilot2-wrapper.sh
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc      5111 Mar 12 11:22 queuedata.json
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc       100 Mar 13 05:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 06:17:36] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 05:03 run_atlas
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc       105 Mar 13 05:03 job.xml
[2026-03-13 06:17:36] -rw-r--r-- 2 boinc boinc 437577412 Mar 13 05:03 EVNT.46701403._000891.pool.root.1
[2026-03-13 06:17:36] -rw-r--r-- 2 boinc boinc    597526 Mar 13 05:03 input.tar.gz
[2026-03-13 06:17:36] -rw-r--r-- 2 boinc boinc     15845 Mar 13 05:03 start_atlas.sh
[2026-03-13 06:17:36] drwxrwx--x 2 boinc boinc      4096 Mar 13 05:03 shared
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc         0 Mar 13 05:03 boinc_setup_complete
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc      6450 Mar 13 05:03 init_data.xml
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc         0 Mar 13 05:03 boinc_lockfile
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc      2565 Mar 13 05:03 pandaJob.out
[2026-03-13 06:17:36] -rw------- 1 boinc boinc   1006514 Mar 13 05:03 agis_schedconf.cvmfs.json
[2026-03-13 06:17:36] -rw------- 1 boinc boinc   1511578 Mar 13 05:03 agis_ddmendpoints.agis.ALL.json
[2026-03-13 06:17:36] -rw------- 1 boinc boinc       426 Mar 13 05:03 workernode_map.json
[2026-03-13 06:17:36] drwx------ 5 boinc boinc      4096 Mar 13 05:03 pilot3
[2026-03-13 06:17:36] -rw------- 1 boinc boinc        95 Mar 13 06:16 pilot_heartbeat.json
[2026-03-13 06:17:36] -rw------- 1 boinc boinc 183002782 Mar 13 06:16 HITS.48955006._044979.pool.root.1
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc       530 Mar 13 06:16 boinc_task_state.xml
[2026-03-13 06:17:36] -rw------- 1 boinc boinc      1014 Mar 13 06:16 memory_monitor_summary.json
[2026-03-13 06:17:36] -rw------- 1 boinc boinc    267695 Mar 13 06:17 log.48955006._044979.job.log.tgz.1
[2026-03-13 06:17:36] -rw------- 1 boinc boinc      6310 Mar 13 06:17 heartbeat.json
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc        27 Mar 13 06:17 wrapper_checkpoint.txt
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc      8192 Mar 13 06:17 boinc_mmap_file
[2026-03-13 06:17:36] -rw------- 1 boinc boinc      4624 Mar 13 06:17 pilotlog.txt
[2026-03-13 06:17:36] -rw------- 1 boinc boinc    654523 Mar 13 06:17 log.48955006._044979.job.log.1
[2026-03-13 06:17:36] -rw------- 1 boinc boinc       357 Mar 13 06:17 output.list
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc       620 Mar 13 06:17 runtime_log
[2026-03-13 06:17:36] -rw------- 1 boinc boinc    942080 Mar 13 06:17 result.tar.gz
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc      8916 Mar 13 06:17 runtime_log.err
[2026-03-13 06:17:36] -rw------- 1 boinc boinc       661 Mar 13 06:17 GnbKDmuLsK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmZqjLDmidQKmn.diag
[2026-03-13 06:17:36] -rw-r--r-- 1 boinc boinc     11861 Mar 13 06:17 stderr.txt
[2026-03-13 06:17:36] HITS file was successfully produced:
[2026-03-13 06:17:36] -rw------- 1 boinc boinc 183002782 Mar 13 06:16 shared/HITS.pool.root.1
[2026-03-13 06:17:36]  *** Contents of shared directory: ***
[2026-03-13 06:17:36] total 607568
[2026-03-13 06:17:36] -rw-r--r-- 2 boinc boinc 437577412 Mar 13 05:03 ATLAS.root_0
[2026-03-13 06:17:36] -rw-r--r-- 2 boinc boinc    597526 Mar 13 05:03 input.tar.gz
[2026-03-13 06:17:36] -rw-r--r-- 2 boinc boinc     15845 Mar 13 05:03 start_atlas.sh
[2026-03-13 06:17:36] -rw------- 1 boinc boinc 183002782 Mar 13 06:16 HITS.pool.root.1
[2026-03-13 06:17:36] -rw------- 1 boinc boinc    942080 Mar 13 06:17 result.tar.gz
06:17:37 (1461226): run_atlas exited; CPU time 12534.899247
06:17:37 (1461226): called boinc_finish(0)

</stderr_txt>
]]>

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