Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:28:53 (13676): wrapper (7.7.26015): starting
18:28:53 (13676): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 18:28:53] Arguments: --nthreads 8
[2026-03-12 18:28:53] Threads: 8
[2026-03-12 18:28:53] Checking for CVMFS
[2026-03-12 18:28:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 18:28:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 18:28:53] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 18:28:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 18:28:53] 2.11.0.0 4324 218436 94600 157210 3 188 2829018 4096001 2751 130560 7 21968355 99.693 14394414 474 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-12 18:28:53] CVMFS is ok
[2026-03-12 18:28:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 18:28:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 18:28:53] Further information can be found at the LHC@home message board.
[2026-03-12 18:28:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 18:28:53] Checking for apptainer binary...
[2026-03-12 18:28:53] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-12 18:28:53] apptainer is not installed, using version from CVMFS
[2026-03-12 18:28:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 18:28:54] WARNING: Environment variable TMPDIR already has value [/tmp/job_11301483/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node291
[2026-03-12 18:28:54] apptainer works
[2026-03-12 18:28:54] Set ATHENA_PROC_NUMBER=8
[2026-03-12 18:28:54] Set ATHENA_CORE_NUMBER=8
[2026-03-12 18:28:54] Starting ATLAS job with PandaID=7038749634
[2026-03-12 18:28:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11301483/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 19:06:10]  *** The last 200 lines of the pilot log: ***
[2026-03-12 19:06:10]  surl=/tmp/job_11301483/atlas/pilot/slots/0/PanDA_Pilot-7038749634/log.48700890._002961.job.log.tgz.1
[2026-03-12 19:06:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/a1/log.48700890._002961.job.log.tgz.1
[2026-03-12 19:06:10]  workdir=None
[2026-03-12 19:06:10] ]
[2026-03-12 19:06:10] 2026-03-12 18:05:11,467 | INFO     | transferring file log.48700890._002961.job.log.tgz.1 from /tmp/job_11301483/atlas/pilot/slots/0/PanDA_Pilot-7038749634/log.48700890._002961.job.log.tgz.1 to /tmp/j
[2026-03-12 19:06:10] 2026-03-12 18:05:11,468 | INFO     | executing command: /usr/bin/env mv /tmp/job_11301483/atlas/pilot/slots/0/PanDA_Pilot-7038749634/log.48700890._002961.job.log.tgz.1 /tmp/job_11301483/atlas/pilot/sl
[2026-03-12 19:06:10] 2026-03-12 18:05:11,475 | INFO     | adding to output.list: log.48700890._002961.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/a1/log.48700890._002961.job.log.tg
[2026-03-12 19:06:10] 2026-03-12 18:05:11,476 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 19:06:10] 2026-03-12 18:05:11,476 | INFO     | summary of transferred files:
[2026-03-12 19:06:10] 2026-03-12 18:05:11,476 | INFO     |  -- lfn=log.48700890._002961.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 19:06:10] 2026-03-12 18:05:11,476 | INFO     | stage-out finished correctly
[2026-03-12 19:06:10] 2026-03-12 18:05:12,273 | INFO     | time since job start (2172s) is within the limit (349056.0s)
[2026-03-12 19:06:10] 2026-03-12 18:05:14,225 | WARNING  | process 22037 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 19:06:10] 2026-03-12 18:05:14,225 | INFO     | using path: /tmp/job_11301483/atlas/pilot/slots/0/PanDA_Pilot-7038749634/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 19:06:10] 2026-03-12 18:05:14,225 | INFO     | using path: /tmp/job_11301483/atlas/pilot/slots/0/PanDA_Pilot-7038749634/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 19:06:10] 2026-03-12 18:05:14,225 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-12 19:06:10] 2026-03-12 18:05:14,226 | WARNING  | maxPSS not found in memory monitor output
[2026-03-12 19:06:10] 2026-03-12 18:05:14,226 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3296323 B
[2026-03-12 19:06:10] 2026-03-12 18:05:14,226 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15859 B
[2026-03-12 19:06:10] 2026-03-12 18:05:14,226 | INFO     | executing command: df -mP /tmp/job_11301483/atlas/pilot/slots/0
[2026-03-12 19:06:10] 2026-03-12 18:05:14,232 | INFO     | sufficient remaining disk space (224970932224 B)
[2026-03-12 19:06:10] 2026-03-12 18:05:14,232 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-12 19:06:10] 2026-03-12 18:05:14,233 | INFO     | size of work directory /tmp/job_11301483/atlas/pilot/slots/0/PanDA_Pilot-7038749634: 3584233 B (within 5033164800 B limit)
[2026-03-12 19:06:10] 2026-03-12 18:05:14,233 | INFO     | pfn file=/tmp/job_11301483/atlas/pilot/slots/0/PanDA_Pilot-7038749634/HITS.48700890._002961.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-12 19:06:10] 2026-03-12 18:05:14,233 | INFO     | total size of present files: 0 B (workdir size: 3584233 B)
[2026-03-12 19:06:10] 2026-03-12 18:05:14,233 | INFO     | output file size check: skipping output file /tmp/job_11301483/atlas/pilot/slots/0/PanDA_Pilot-7038749634/HITS.48700890._002961.pool.root.1 since it does not exist
[2026-03-12 19:06:10] 2026-03-12 18:05:14,278 | INFO     | time since job start (2174s) is within the limit (349056.0s)
[2026-03-12 19:06:10] 2026-03-12 18:05:14,334 | INFO     | number of running child processes to parent process 22037: 1
[2026-03-12 19:06:10] 2026-03-12 18:05:14,334 | INFO     | maximum number of monitored processes: 6
[2026-03-12 19:06:10] 2026-03-12 18:05:15,004 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 19:06:10] 2026-03-12 18:05:15,540 | INFO     | job 7038749634 has state=finished
[2026-03-12 19:06:10] 2026-03-12 18:05:15,540 | INFO     | preparing for final server update for job 7038749634 in state='finished'
[2026-03-12 19:06:10] 2026-03-12 18:05:15,540 | INFO     | reading metadata from: /tmp/job_11301483/atlas/pilot/slots/0/PanDA_Pilot-7038749634/jobReport.json
[2026-03-12 19:06:10] 2026-03-12 18:05:15,541 | INFO     | added worker_node to metadata from /tmp/job_11301483/atlas/pilot/slots/0/workernode_map.json
[2026-03-12 19:06:10] 2026-03-12 18:05:15,542 | INFO     | this job has now completed (state=finished)
[2026-03-12 19:06:10] 2026-03-12 18:05:15,542 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 19:06:10] 2026-03-12 18:05:15,542 | INFO     | log transfer has been attempted: DONE
[2026-03-12 19:06:10] 2026-03-12 18:05:15,542 | INFO     | job 7038749634 has finished - writing final server update
[2026-03-12 19:06:10] 2026-03-12 18:05:15,542 | INFO     | total number of processed events: 400 (read)
[2026-03-12 19:06:10] 2026-03-12 18:05:15,560 | INFO     | using path: /tmp/job_11301483/atlas/pilot/slots/0/PanDA_Pilot-7038749634/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 19:06:10] 2026-03-12 18:05:15,560 | INFO     | extracted standard info from prmon json
[2026-03-12 19:06:10] 2026-03-12 18:05:15,560 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 19:06:10] 2026-03-12 18:05:15,560 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 19:06:10] 2026-03-12 18:05:15,560 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 19:06:10] 2026-03-12 18:05:15,560 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | fitting pss+swap vs Time
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | sum of square deviations: 7553630.0
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | sum of deviations: 122290604.00000001
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | mean x: 1773337714.0
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | mean y: 2594216.5862068967
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | intersect: -28707117556.56647
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | chi2: 0.00016766296997055262
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | current memory leak: 16.19 B/s (using 29 data points, chi2=0.00)
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | could have reported an average CPU frequency of 2719 MHz (5 samples)
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | ..............................
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | . Timing measurements:
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | . get job = 0 s
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | . initial setup = 2 s
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | . payload setup = 2 s
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | . stage-in = 0 s
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | . payload execution = 2154 s
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | . stage-out = 0 s
[2026-03-12 19:06:10] 2026-03-12 18:05:15,561 | INFO     | . log creation = 0 s
[2026-03-12 19:06:10] 2026-03-12 18:05:15,562 | INFO     | ..............................
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | 
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | job summary report
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | --------------------------------------------------
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | PanDA job id: 7038749634
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | task id: 48700890
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | errors: (none)
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | pilot state: finished 
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | transexitcode: 0
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | exeerrorcode: 0
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | exeerrordiag: 
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | exitcode: 0
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | exitmsg: OK
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | cpuconsumptiontime: 15318 s
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | nevents: 400
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | neventsw: 0
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | pid: 22037
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | pgrp: 22037
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | corecount: 8
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | event service: False
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | sizes: {0: 2280243, 11: 2280243, 2160: 2314412, 2164: 2314666}
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | --------------------------------------------------
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | 
[2026-03-12 19:06:10] 2026-03-12 18:05:15,607 | INFO     | executing command: ls -lF /tmp/job_11301483/atlas/pilot/slots/0
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | job 7038749634 has completed (purged errors)
[2026-03-12 19:06:10] 2026-03-12 18:05:15,617 | INFO     | overall cleanup function is called
[2026-03-12 19:06:10] 2026-03-12 18:05:16,623 | INFO     | --- collectZombieJob: --- 10, [22037]
[2026-03-12 19:06:10] 2026-03-12 18:05:16,623 | INFO     | zombie collector waiting for pid 22037
[2026-03-12 19:06:10] 2026-03-12 18:05:16,623 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 19:06:10] 2026-03-12 18:05:16,623 | INFO     | collected zombie processes
[2026-03-12 19:06:10] 2026-03-12 18:05:16,623 | INFO     | will attempt to kill all subprocesses of pid=22037
[2026-03-12 19:06:10] 2026-03-12 18:05:16,721 | INFO     | process IDs to be killed: [22037] (in reverse order)
[2026-03-12 19:06:10] 2026-03-12 18:05:16,756 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 19:06:10] 2026-03-12 18:05:16,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 19:06:10] 2026-03-12 18:05:16,760 | INFO     | did not find any defunct processes belonging to 22037
[2026-03-12 19:06:10] 2026-03-12 18:05:16,763 | INFO     | did not find any defunct processes belonging to 22037
[2026-03-12 19:06:10] 2026-03-12 18:05:16,763 | INFO     | ready for new job
[2026-03-12 19:06:10] 2026-03-12 18:05:16,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 19:06:10] 2026-03-12 18:05:16,764 | INFO     | **************************************
[2026-03-12 19:06:10] 2026-03-12 18:05:16,764 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 19:06:10] 2026-03-12 18:05:16,764 | INFO     | **************************************
[2026-03-12 19:06:10] 2026-03-12 18:05:16,764 | INFO     | 
[2026-03-12 19:06:10] 2026-03-12 18:05:16,777 | INFO     | architecture information:
[2026-03-12 19:06:10] 2026-03-12 18:05:16,777 | INFO     | executing command: cat /etc/os-release
[2026-03-12 19:06:10] 2026-03-12 18:05:16,783 | INFO     | cat /etc/os-release:
[2026-03-12 19:06:10] NAME="CentOS Linux"
[2026-03-12 19:06:10] VERSION="7 (Core)"
[2026-03-12 19:06:10] ID="centos"
[2026-03-12 19:06:10] ID_LIKE="rhel fedora"
[2026-03-12 19:06:10] VERSION_ID="7"
[2026-03-12 19:06:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 19:06:10] ANSI_COLOR="0;31"
[2026-03-12 19:06:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 19:06:10] HOME_URL="https://www.centos.org/"
[2026-03-12 19:06:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 19:06:10] 
[2026-03-12 19:06:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 19:06:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 19:06:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 19:06:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 19:06:10] 
[2026-03-12 19:06:10] 2026-03-12 18:05:16,783 | INFO     | **************************************
[2026-03-12 19:06:10] 2026-03-12 18:05:17,286 | INFO     | executing command: df -mP /tmp/job_11301483/atlas/pilot/slots/0
[2026-03-12 19:06:10] 2026-03-12 18:05:17,293 | INFO     | sufficient remaining disk space (224975126528 B)
[2026-03-12 19:06:10] 2026-03-12 18:05:17,293 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 19:06:10] 2026-03-12 18:05:17,293 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 19:06:10] 2026-03-12 18:05:17,293 | INFO     | update_server=False
[2026-03-12 19:06:10] 2026-03-12 18:05:17,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 19:06:10] 2026-03-12 18:05:17,293 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 19:06:10] 2026-03-12 18:05:17,293 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 19:06:10] 2026-03-12 18:05:17,293 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 19:06:10] 2026-03-12 18:05:17,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 19:06:10] 2026-03-12 18:05:17,842 | INFO     | aborting loop
[2026-03-12 19:06:10] 2026-03-12 18:05:18,097 | INFO     | all payload control threads have been joined
[2026-03-12 19:06:10] 2026-03-12 18:05:18,144 | INFO     | all data control threads have been joined
[2026-03-12 19:06:10] 2026-03-12 18:05:18,298 | INFO     | [job] retrieve thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:18,298 | INFO     | [job] queue monitor thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:18,314 | INFO     | [data] copytool_in thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:18,556 | INFO     | [payload] validate_post thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:18,847 | INFO     | [job] job monitor thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:18,861 | INFO     | all job control threads have been joined
[2026-03-12 19:06:10] 2026-03-12 18:05:19,076 | INFO     | [payload] failed_post thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:19,102 | INFO     | [payload] control thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:19,149 | INFO     | [data] control thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:19,298 | INFO     | [data] copytool_out thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:19,446 | INFO     | [job] validate thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:19,448 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:19,603 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:19,615 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:19,866 | INFO     | [job] control thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:21,299 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:28,282 | INFO     | job.realtimelogging is not enabled
[2026-03-12 19:06:10] 2026-03-12 18:05:29,287 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 19:06:10] 2026-03-12 18:05:47,464 | INFO     | PID=17486 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 19:06:10] 2026-03-12 18:05:47,464 | INFO     | .. there are 4 such processes running
[2026-03-12 19:06:10] 2026-03-12 18:05:47,464 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 19:06:10] 2026-03-12 18:05:47,464 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 19:06:10] 2026-03-12 18:05:47,464 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 19:06:10] 2026-03-12 18:06:03,214 | INFO     | [monitor] cgroup control has ended
[2026-03-12 19:06:10] 2026-03-12 18:06:04,910 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-03-12 19:06:10] 2026-03-12 18:06:05,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 19:06:10] 2026-03-12 18:06:05,554 | INFO     | [monitor] control thread has ended
[2026-03-12 19:06:10] 2026-03-12 18:06:09,935 | INFO     | all workflow threads have been joined
[2026-03-12 19:06:10] 2026-03-12 18:06:09,935 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 19:06:10] 2026-03-12 18:06:09,935 | INFO     | traces error code: 0
[2026-03-12 19:06:10] 2026-03-12 18:06:09,936 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 19:06:10] 2026-03-12 18:06:09,985 [wrapper] ==== pilot stdout END ====
[2026-03-12 19:06:10] 2026-03-12 18:06:09,986 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 19:06:10] 2026-03-12 18:06:09,987 [wrapper] pilotpid: 17486
[2026-03-12 19:06:10] 2026-03-12 18:06:09,988 [wrapper] Pilot exit status: 0
[2026-03-12 19:06:10] 2026-03-12 18:06:09,992 [wrapper] pandaids: 7038749634
[2026-03-12 19:06:10] 2026-03-12 18:06:10,015 [wrapper] cleanup supervisor_pilot 32584 17487
[2026-03-12 19:06:10] 2026-03-12 18:06:10,016 [wrapper] Test setup, not cleaning
[2026-03-12 19:06:10] 2026-03-12 18:06:10,017 [wrapper] apfmon messages muted
[2026-03-12 19:06:10] 2026-03-12 18:06:10,018 [wrapper] ==== wrapper stdout END ====
[2026-03-12 19:06:10] 2026-03-12 18:06:10,019 [wrapper] ==== wrapper stderr END ====
[2026-03-12 19:06:10]  *** Error codes and diagnostics ***
[2026-03-12 19:06:10]     "exeErrorCode": 0,
[2026-03-12 19:06:10]     "exeErrorDiag": "",
[2026-03-12 19:06:10]     "pilotErrorCode": 0,
[2026-03-12 19:06:10]     "pilotErrorDiag": "",
[2026-03-12 19:06:10]  *** Listing of results directory ***
[2026-03-12 19:06:10] total 330984
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user    584627 Mar  4 10:32 pilot3.tar.gz
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user      5111 Mar  4 10:32 queuedata.json
[2026-03-12 19:06:10] -rwx------ 1 mf493845 unix-user     36322 Mar  4 10:32 runpilot2-wrapper.sh
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user       100 Mar 12 17:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 19:06:10] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 12 17:40 run_atlas
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user       105 Mar 12 17:40 job.xml
[2026-03-12 19:06:10] -rw-r--r-- 2 mf493845 unix-user 190625569 Mar 12 18:28 EVNT.48700888._000130.pool.root.1
[2026-03-12 19:06:10] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 12 18:28 start_atlas.sh
[2026-03-12 19:06:10] drwxrwx--x 2 mf493845 unix-user       100 Mar 12 18:28 shared
[2026-03-12 19:06:10] -rw-r--r-- 2 mf493845 unix-user    597930 Mar 12 18:28 input.tar.gz
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user      6390 Mar 12 18:28 init_data.xml
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user         0 Mar 12 18:28 boinc_setup_complete
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user      8192 Mar 12 18:28 boinc_mmap_file
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user         0 Mar 12 18:28 boinc_lockfile
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user      2512 Mar 12 18:28 pandaJob.out
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user   1006522 Mar 12 18:28 agis_schedconf.cvmfs.json
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user   1511578 Mar 12 18:28 agis_ddmendpoints.agis.ALL.json
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user       420 Mar 12 18:28 workernode_map.json
[2026-03-12 19:06:10] drwx------ 5 mf493845 unix-user       440 Mar 12 18:29 pilot3
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user 143090297 Mar 12 19:04 HITS.48700890._002961.pool.root.1
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user      1003 Mar 12 19:05 memory_monitor_summary.json
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user    288859 Mar 12 19:05 log.48700890._002961.job.log.tgz.1
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user      6286 Mar 12 19:05 heartbeat.json
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user        95 Mar 12 19:05 pilot_heartbeat.json
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user      4903 Mar 12 19:06 pilotlog.txt
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user    362064 Mar 12 19:06 log.48700890._002961.job.log.1
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user       357 Mar 12 19:06 output.list
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user       620 Mar 12 19:06 runtime_log
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user    665600 Mar 12 19:06 result.tar.gz
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user      9219 Mar 12 19:06 runtime_log.err
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user       638 Mar 12 19:06 KEcMDmGmxH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmGzJLDmog1J6n.diag
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user     23127 Mar 12 19:06 stderr.txt
[2026-03-12 19:06:10] HITS file was successfully produced:
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user 143090297 Mar 12 19:04 shared/HITS.pool.root.1
[2026-03-12 19:06:10]  *** Contents of shared directory: ***
[2026-03-12 19:06:10] total 327152
[2026-03-12 19:06:10] -rw-r--r-- 2 mf493845 unix-user 190625569 Mar 12 18:28 ATLAS.root_0
[2026-03-12 19:06:10] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 12 18:28 start_atlas.sh
[2026-03-12 19:06:10] -rw-r--r-- 2 mf493845 unix-user    597930 Mar 12 18:28 input.tar.gz
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user 143090297 Mar 12 19:04 HITS.pool.root.1
[2026-03-12 19:06:10] -rw------- 1 mf493845 unix-user    665600 Mar 12 19:06 result.tar.gz
19:06:11 (13676): run_atlas exited; CPU time 15345.061775
19:06:11 (13676): called boinc_finish(0)

</stderr_txt>
]]>

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