Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:33:58 (27752): wrapper (7.7.26015): starting
11:33:58 (27752): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 11:33:58] Arguments: --nthreads 8
[2026-03-12 11:33:58] Threads: 8
[2026-03-12 11:33:58] Checking for CVMFS
[2026-03-12 11:33:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 11:33:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 11:33:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 11:33:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 11:33:59] 2.11.2.0 4329 119168 258408 157205 3 50 10107322 18432001 1833 130560 0 63732395 99.963 5225838 19218 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-12 11:33:59] CVMFS is ok
[2026-03-12 11:33:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 11:33:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 11:33:59] Further information can be found at the LHC@home message board.
[2026-03-12 11:33:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 11:33:59] Checking for apptainer binary...
[2026-03-12 11:33:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 11:33:59] Running /usr/bin/apptainer --version
[2026-03-12 11:33:59] apptainer version 1.3.2-1.el7
[2026-03-12 11:33:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 11:33:59] c-206-17.aglt2.org
[2026-03-12 11:33:59] apptainer works
[2026-03-12 11:33:59] Set ATHENA_PROC_NUMBER=8
[2026-03-12 11:33:59] Set ATHENA_CORE_NUMBER=8
[2026-03-12 11:33:59] Starting ATLAS job with PandaID=7039748709
[2026-03-12 11:33:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 13:54:34]  *** The last 200 lines of the pilot log: ***
[2026-03-12 13:54:34] 2026-03-12 17:53:49,598 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 13:54:34] 2026-03-12 17:53:49,598 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 13:54:34] 2026-03-12 17:53:49,602 | INFO     | fitting pss+swap vs Time
[2026-03-12 13:54:34] 2026-03-12 17:53:49,603 | INFO     | sum of square deviations: 797291228.0
[2026-03-12 13:54:34] 2026-03-12 17:53:49,604 | INFO     | sum of deviations: -794066645.9999998
[2026-03-12 13:54:34] 2026-03-12 17:53:49,604 | INFO     | mean x: 1773333823.0
[2026-03-12 13:54:34] 2026-03-12 17:53:49,604 | INFO     | mean y: 2493812.3357664235
[2026-03-12 13:54:34] 2026-03-12 17:53:49,605 | INFO     | intersect: 1768655525.4155536
[2026-03-12 13:54:34] 2026-03-12 17:53:49,605 | INFO     | chi2: 1.5275825362388067
[2026-03-12 13:54:34] 2026-03-12 17:53:49,605 | INFO     | sum of square deviations: 713140813.0
[2026-03-12 13:54:34] 2026-03-12 17:53:49,606 | INFO     | sum of deviations: -582461488.9999989
[2026-03-12 13:54:34] 2026-03-12 17:53:49,607 | INFO     | mean x: 1773333670.5
[2026-03-12 13:54:34] 2026-03-12 17:53:49,607 | INFO     | mean y: 2494195.984848485
[2026-03-12 13:54:34] 2026-03-12 17:53:49,607 | INFO     | intersect: 1450873746.5368984
[2026-03-12 13:54:34] 2026-03-12 17:53:49,607 | INFO     | chi2: 1.5280932079180225
[2026-03-12 13:54:34] 2026-03-12 17:53:49,608 | INFO     | current chi2=1.5280932079180225 (change=-0.03343005481544596 %)
[2026-03-12 13:54:34] 2026-03-12 17:53:49,608 | INFO     | right removable region: 131
[2026-03-12 13:54:34] 2026-03-12 17:53:49,608 | INFO     | sum of square deviations: 713140813.0
[2026-03-12 13:54:34] 2026-03-12 17:53:49,609 | INFO     | sum of deviations: -20071402759.5
[2026-03-12 13:54:34] 2026-03-12 17:53:49,609 | INFO     | mean x: 1773333975.5
[2026-03-12 13:54:34] 2026-03-12 17:53:49,609 | INFO     | mean y: 2528133.7045454546
[2026-03-12 13:54:34] 2026-03-12 17:53:49,610 | INFO     | intersect: 49913148589.75998
[2026-03-12 13:54:34] 2026-03-12 17:53:49,610 | INFO     | chi2: 0.13688130867007364
[2026-03-12 13:54:34] 2026-03-12 17:53:49,610 | INFO     | current chi2=0.13688130867007364 (change=91.03935103846494 %)
[2026-03-12 13:54:34] 2026-03-12 17:53:49,611 | INFO     | sum of square deviations: 635130048.0
[2026-03-12 13:54:34] 2026-03-12 17:53:49,611 | INFO     | sum of deviations: -17743802487.999996
[2026-03-12 13:54:34] 2026-03-12 17:53:49,612 | INFO     | mean x: 1773334128.0
[2026-03-12 13:54:34] 2026-03-12 17:53:49,612 | INFO     | mean y: 2523503.7086614175
[2026-03-12 13:54:34] 2026-03-12 17:53:49,612 | INFO     | intersect: 49544645800.62399
[2026-03-12 13:54:34] 2026-03-12 17:53:49,612 | INFO     | chi2: 0.1265596880574972
[2026-03-12 13:54:34] 2026-03-12 17:53:49,613 | INFO     | current chi2=0.1265596880574972 (change=7.540562486478517 %)
[2026-03-12 13:54:34] 2026-03-12 17:53:49,613 | INFO     | left removable region: 20
[2026-03-12 13:54:34] 2026-03-12 17:53:49,613 | INFO     | sum of square deviations: 424045160.0
[2026-03-12 13:54:34] 2026-03-12 17:53:49,614 | INFO     | sum of deviations: -8905883856.0
[2026-03-12 13:54:34] 2026-03-12 17:53:49,614 | INFO     | mean x: 1773334250.0
[2026-03-12 13:54:34] 2026-03-12 17:53:49,614 | INFO     | mean y: 2506134.036036036
[2026-03-12 13:54:34] 2026-03-12 17:53:49,614 | INFO     | intersect: 37246437578.42952
[2026-03-12 13:54:34] 2026-03-12 17:53:49,615 | INFO     | chi2: 0.09737897186944268
[2026-03-12 13:54:34] 2026-03-12 17:53:49,615 | INFO     | current memory leak: -21.00 B/s (using 111 data points, chi2=0.10)
[2026-03-12 13:54:34] 2026-03-12 17:53:49,615 | INFO     | could have reported an average CPU frequency of 2350 MHz (8 samples)
[2026-03-12 13:54:34] 2026-03-12 17:53:49,616 | INFO     | ..............................
[2026-03-12 13:54:34] 2026-03-12 17:53:49,616 | INFO     | . Timing measurements:
[2026-03-12 13:54:34] 2026-03-12 17:53:49,616 | INFO     | . get job = 0 s
[2026-03-12 13:54:34] 2026-03-12 17:53:49,616 | INFO     | . initial setup = 5 s
[2026-03-12 13:54:34] 2026-03-12 17:53:49,616 | INFO     | . payload setup = 5 s
[2026-03-12 13:54:34] 2026-03-12 17:53:49,617 | INFO     | . stage-in = 0 s
[2026-03-12 13:54:34] 2026-03-12 17:53:49,617 | INFO     | . payload execution = 8352 s
[2026-03-12 13:54:34] 2026-03-12 17:53:49,617 | INFO     | . stage-out = 0 s
[2026-03-12 13:54:34] 2026-03-12 17:53:49,617 | INFO     | . log creation = 0 s
[2026-03-12 13:54:34] 2026-03-12 17:53:49,617 | INFO     | ..............................
[2026-03-12 13:54:34] 2026-03-12 17:53:49,670 | INFO     | time since job start (8375s) is within the limit (349056.0s)
[2026-03-12 13:54:34] 2026-03-12 17:53:50,211 | INFO     | 
[2026-03-12 13:54:34] 2026-03-12 17:53:50,211 | INFO     | job summary report
[2026-03-12 13:54:34] 2026-03-12 17:53:50,211 | INFO     | --------------------------------------------------
[2026-03-12 13:54:34] 2026-03-12 17:53:50,211 | INFO     | PanDA job id: 7039748709
[2026-03-12 13:54:34] 2026-03-12 17:53:50,212 | INFO     | task id: 48700906
[2026-03-12 13:54:34] 2026-03-12 17:53:50,212 | INFO     | errors: (none)
[2026-03-12 13:54:34] 2026-03-12 17:53:50,212 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 13:54:34] 2026-03-12 17:53:50,212 | INFO     | pilot state: finished 
[2026-03-12 13:54:34] 2026-03-12 17:53:50,212 | INFO     | transexitcode: 0
[2026-03-12 13:54:34] 2026-03-12 17:53:50,212 | INFO     | exeerrorcode: 0
[2026-03-12 13:54:34] 2026-03-12 17:53:50,213 | INFO     | exeerrordiag: 
[2026-03-12 13:54:34] 2026-03-12 17:53:50,213 | INFO     | exitcode: 0
[2026-03-12 13:54:34] 2026-03-12 17:53:50,213 | INFO     | exitmsg: OK
[2026-03-12 13:54:34] 2026-03-12 17:53:50,213 | INFO     | cpuconsumptiontime: 62548 s
[2026-03-12 13:54:34] 2026-03-12 17:53:50,213 | INFO     | nevents: 400
[2026-03-12 13:54:34] 2026-03-12 17:53:50,213 | INFO     | neventsw: 0
[2026-03-12 13:54:34] 2026-03-12 17:53:50,214 | INFO     | pid: 3876
[2026-03-12 13:54:34] 2026-03-12 17:53:50,214 | INFO     | pgrp: 3876
[2026-03-12 13:54:34] 2026-03-12 17:53:50,214 | INFO     | corecount: 8
[2026-03-12 13:54:34] 2026-03-12 17:53:50,214 | INFO     | event service: False
[2026-03-12 13:54:34] 2026-03-12 17:53:50,214 | INFO     | sizes: {0: 2279692, 1: 2280153, 11: 2280153, 8361: 2308090, 8362: 2317088, 8364: 2317466}
[2026-03-12 13:54:34] 2026-03-12 17:53:50,215 | INFO     | --------------------------------------------------
[2026-03-12 13:54:34] 2026-03-12 17:53:50,215 | INFO     | 
[2026-03-12 13:54:34] 2026-03-12 17:53:50,215 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-12 13:54:34] 2026-03-12 17:53:50,230 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,231 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,231 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,231 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,231 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,231 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,232 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,232 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,232 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,232 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,232 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,233 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,233 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,233 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,233 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,233 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,234 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,234 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 13:54:34] 2026-03-12 17:53:50,234 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,234 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 13:54:34] 2026-03-12 17:53:50,234 | INFO     | job 7039748709 has completed (purged errors)
[2026-03-12 13:54:34] 2026-03-12 17:53:50,235 | INFO     | overall cleanup function is called
[2026-03-12 13:54:34] 2026-03-12 17:53:51,242 | INFO     | --- collectZombieJob: --- 10, [3876]
[2026-03-12 13:54:34] 2026-03-12 17:53:51,242 | INFO     | zombie collector waiting for pid 3876
[2026-03-12 13:54:34] 2026-03-12 17:53:51,242 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 13:54:34] 2026-03-12 17:53:51,242 | INFO     | collected zombie processes
[2026-03-12 13:54:34] 2026-03-12 17:53:51,243 | INFO     | will attempt to kill all subprocesses of pid=3876
[2026-03-12 13:54:34] 2026-03-12 17:53:51,351 | INFO     | process IDs to be killed: [3876] (in reverse order)
[2026-03-12 13:54:34] 2026-03-12 17:53:51,401 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 13:54:34] 2026-03-12 17:53:51,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 13:54:34] 2026-03-12 17:53:51,404 | INFO     | did not find any defunct processes belonging to 3876
[2026-03-12 13:54:34] 2026-03-12 17:53:51,406 | INFO     | did not find any defunct processes belonging to 3876
[2026-03-12 13:54:34] 2026-03-12 17:53:51,406 | INFO     | ready for new job
[2026-03-12 13:54:34] 2026-03-12 17:53:51,407 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 13:54:34] 2026-03-12 17:53:51,408 | INFO     | **************************************
[2026-03-12 13:54:34] 2026-03-12 17:53:51,408 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 13:54:34] 2026-03-12 17:53:51,408 | INFO     | **************************************
[2026-03-12 13:54:34] 2026-03-12 17:53:51,408 | INFO     | 
[2026-03-12 13:54:34] 2026-03-12 17:53:51,409 | INFO     | architecture information:
[2026-03-12 13:54:34] 2026-03-12 17:53:51,409 | INFO     | executing command: cat /etc/os-release
[2026-03-12 13:54:34] 2026-03-12 17:53:51,421 | INFO     | cat /etc/os-release:
[2026-03-12 13:54:34] NAME="CentOS Linux"
[2026-03-12 13:54:34] VERSION="7 (Core)"
[2026-03-12 13:54:34] ID="centos"
[2026-03-12 13:54:34] ID_LIKE="rhel fedora"
[2026-03-12 13:54:34] VERSION_ID="7"
[2026-03-12 13:54:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 13:54:34] ANSI_COLOR="0;31"
[2026-03-12 13:54:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 13:54:34] HOME_URL="https://www.centos.org/"
[2026-03-12 13:54:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 13:54:34] 
[2026-03-12 13:54:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 13:54:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 13:54:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 13:54:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 13:54:34] 
[2026-03-12 13:54:34] 2026-03-12 17:53:51,422 | INFO     | **************************************
[2026-03-12 13:54:34] 2026-03-12 17:53:51,583 | WARNING  | process 3876 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 13:54:34] 2026-03-12 17:53:51,678 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 13:54:34] 2026-03-12 17:53:51,678 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 13:54:34] 2026-03-12 17:53:51,679 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-12 13:54:34] 2026-03-12 17:53:51,679 | WARNING  | maxPSS not found in memory monitor output
[2026-03-12 13:54:34] 2026-03-12 17:53:51,679 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/1/PanDA_Pilot-7039748709/payload.stdout) since it has not been created yet
[2026-03-12 13:54:34] 2026-03-12 17:53:51,679 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-12 13:54:34] 2026-03-12 17:53:51,689 | INFO     | sufficient remaining disk space (28247588864 B)
[2026-03-12 13:54:34] 2026-03-12 17:53:51,690 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-12 13:54:34] 2026-03-12 17:53:51,690 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-7039748709/HITS.48700906._003342.pool.root.1 since it does not exist
[2026-03-12 13:54:34] 2026-03-12 17:53:51,807 | INFO     | number of running child processes to parent process 3876: 1
[2026-03-12 13:54:34] 2026-03-12 17:53:51,807 | INFO     | maximum number of monitored processes: 6
[2026-03-12 13:54:34] 2026-03-12 17:53:51,807 | INFO     | aborting job monitoring since job object (job id=7039748709) has expired
[2026-03-12 13:54:34] 2026-03-12 17:53:51,925 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-12 13:54:34] 2026-03-12 17:53:51,937 | INFO     | sufficient remaining disk space (28247588864 B)
[2026-03-12 13:54:34] 2026-03-12 17:53:51,937 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 13:54:34] 2026-03-12 17:53:51,938 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 13:54:34] 2026-03-12 17:53:51,938 | INFO     | update_server=False
[2026-03-12 13:54:34] 2026-03-12 17:53:51,938 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 13:54:34] 2026-03-12 17:53:51,939 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 13:54:34] 2026-03-12 17:53:51,939 | INFO     | will abort loop
[2026-03-12 13:54:34] 2026-03-12 17:53:52,145 | INFO     | job.realtimelogging is not enabled
[2026-03-12 13:54:34] 2026-03-12 17:53:52,151 | INFO     | all job control threads have been joined
[2026-03-12 13:54:34] 2026-03-12 17:53:52,198 | INFO     | all payload control threads have been joined
[2026-03-12 13:54:34] 2026-03-12 17:53:52,624 | INFO     | all data control threads have been joined
[2026-03-12 13:54:34] 2026-03-12 17:53:52,944 | INFO     | [job] retrieve thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:52,944 | INFO     | [job] job monitor thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:53,150 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:53,156 | INFO     | [job] control thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:53,178 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:53,203 | INFO     | [payload] control thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:53,254 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:53,287 | INFO     | [job] validate thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:53,293 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 13:54:34] 2026-03-12 17:53:53,423 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:53,506 | INFO     | [payload] failed_post thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:53,629 | INFO     | [data] control thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:53,844 | INFO     | [data] copytool_in thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:54,146 | INFO     | [payload] validate_post thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:54,779 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 13:54:34] 2026-03-12 17:53:55,300 | INFO     | [data] copytool_out thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:55,335 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 13:54:34] 2026-03-12 17:53:55,784 | INFO     | [job] queue monitor thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:53:59,342 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 13:54:34] 2026-03-12 17:54:22,972 | INFO     | PID=31762 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 13:54:34] 2026-03-12 17:54:22,972 | INFO     | .. there are 3 such processes running
[2026-03-12 13:54:34] 2026-03-12 17:54:22,973 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 13:54:34] 2026-03-12 17:54:22,973 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 13:54:34] 2026-03-12 17:54:22,973 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 13:54:34] 2026-03-12 17:54:27,546 | INFO     | [monitor] cgroup control has ended
[2026-03-12 13:54:34] 2026-03-12 17:54:28,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140233424295744)>', '<ExcThread(monitor, started 140232762586880)>']
[2026-03-12 13:54:34] 2026-03-12 17:54:29,005 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 13:54:34] 2026-03-12 17:54:29,005 | INFO     | [monitor] control thread has ended
[2026-03-12 13:54:34] 2026-03-12 17:54:33,996 | INFO     | all workflow threads have been joined
[2026-03-12 13:54:34] 2026-03-12 17:54:33,996 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 13:54:34] 2026-03-12 17:54:33,996 | INFO     | traces error code: 0
[2026-03-12 13:54:34] 2026-03-12 17:54:33,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 13:54:34] 2026-03-12 17:54:34,089 [wrapper] ==== pilot stdout END ====
[2026-03-12 13:54:34] 2026-03-12 17:54:34,091 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 13:54:34] 2026-03-12 17:54:34,093 [wrapper] pilotpid: 31762
[2026-03-12 13:54:34] 2026-03-12 17:54:34,096 [wrapper] Pilot exit status: 0
[2026-03-12 13:54:34] 2026-03-12 17:54:34,106 [wrapper] pandaids: 7039748709
[2026-03-12 13:54:34] 2026-03-12 17:54:34,144 [wrapper] cleanup supervisor_pilot 22663 31763
[2026-03-12 13:54:34] 2026-03-12 17:54:34,147 [wrapper] Test setup, not cleaning
[2026-03-12 13:54:34] 2026-03-12 17:54:34,150 [wrapper] apfmon messages muted
[2026-03-12 13:54:34] 2026-03-12 17:54:34,152 [wrapper] ==== wrapper stdout END ====
[2026-03-12 13:54:34] 2026-03-12 17:54:34,154 [wrapper] ==== wrapper stderr END ====
[2026-03-12 13:54:34]  *** Error codes and diagnostics ***
[2026-03-12 13:54:34]     "exeErrorCode": 0,
[2026-03-12 13:54:34]     "exeErrorDiag": "",
[2026-03-12 13:54:34]     "pilotErrorCode": 0,
[2026-03-12 13:54:34]     "pilotErrorDiag": "",
[2026-03-12 13:54:34]  *** Listing of results directory ***
[2026-03-12 13:54:34] total 333476
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas      5111 Mar  4 06:53 queuedata.json
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas    584627 Mar  4 06:53 pilot3.tar.gz
[2026-03-12 13:54:34] -rwx------ 1 boincer umatlas     36322 Mar  4 06:54 runpilot2-wrapper.sh
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas       100 Mar 12 11:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 13:54:34] -rwxr-xr-x 1 boincer umatlas      7986 Mar 12 11:33 run_atlas
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas       105 Mar 12 11:33 job.xml
[2026-03-12 13:54:34] -rw-r--r-- 2 boincer umatlas 191038991 Mar 12 11:33 EVNT.48700904._000138.pool.root.1
[2026-03-12 13:54:34] -rw-r--r-- 2 boincer umatlas     15845 Mar 12 11:33 start_atlas.sh
[2026-03-12 13:54:34] drwxrwx--x 2 boincer umatlas      4096 Mar 12 11:33 shared
[2026-03-12 13:54:34] -rw-r--r-- 2 boincer umatlas    597939 Mar 12 11:33 input.tar.gz
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas         0 Mar 12 11:33 boinc_lockfile
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas      2520 Mar 12 11:33 pandaJob.out
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas        57 Mar 12 11:34 setup.sh.local
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas   1006536 Mar 12 11:34 agis_schedconf.cvmfs.json
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas   1511578 Mar 12 11:34 agis_ddmendpoints.agis.ALL.json
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas       435 Mar 12 11:34 workernode_map.json
[2026-03-12 13:54:34] drwx------ 5 boincer umatlas      4096 Mar 12 11:34 pilot3
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas 143345565 Mar 12 13:53 HITS.48700906._003342.pool.root.1
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas      1050 Mar 12 13:53 memory_monitor_summary.json
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas       529 Mar 12 13:53 boinc_task_state.xml
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas    388018 Mar 12 13:53 log.48700906._003342.job.log.tgz.1
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas      6411 Mar 12 13:53 heartbeat.json
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas        95 Mar 12 13:54 pilot_heartbeat.json
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas      5950 Mar 12 13:54 init_data.xml
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas      8192 Mar 12 13:54 boinc_mmap_file
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas        27 Mar 12 13:54 wrapper_checkpoint.txt
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas      6368 Mar 12 13:54 pilotlog.txt
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas   1190204 Mar 12 13:54 log.48700906._003342.job.log.1
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas       357 Mar 12 13:54 output.list
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas       620 Mar 12 13:54 runtime_log
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas   1597440 Mar 12 13:54 result.tar.gz
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas      9341 Mar 12 13:54 runtime_log.err
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas       658 Mar 12 13:54 GGUMDm2yzH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmfJILDmYNMgtm.diag
[2026-03-12 13:54:34] -rw-r--r-- 1 boincer umatlas     21415 Mar 12 13:54 stderr.txt
[2026-03-12 13:54:34] HITS file was successfully produced:
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas 143345565 Mar 12 13:53 shared/HITS.pool.root.1
[2026-03-12 13:54:34]  *** Contents of shared directory: ***
[2026-03-12 13:54:34] total 328716
[2026-03-12 13:54:34] -rw-r--r-- 2 boincer umatlas 191038991 Mar 12 11:33 ATLAS.root_0
[2026-03-12 13:54:34] -rw-r--r-- 2 boincer umatlas     15845 Mar 12 11:33 start_atlas.sh
[2026-03-12 13:54:34] -rw-r--r-- 2 boincer umatlas    597939 Mar 12 11:33 input.tar.gz
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas 143345565 Mar 12 13:53 HITS.pool.root.1
[2026-03-12 13:54:34] -rw------- 1 boincer umatlas   1597440 Mar 12 13:54 result.tar.gz
13:54:36 (27752): run_atlas exited; CPU time 62672.648710
13:54:36 (27752): called boinc_finish(0)

</stderr_txt>
]]>

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