Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:24:13 (7496): wrapper (7.7.26015): starting
11:24:13 (7496): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 11:24:13] Arguments: --nthreads 8
[2026-03-12 11:24:13] Threads: 8
[2026-03-12 11:24:13] Checking for CVMFS
[2026-03-12 11:24:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 11:24:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 11:24:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 11:24:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 11:24:13] 2.11.2.0 8814 270477 149620 157205 2 188 15302540 18432001 1789 130560 0 175552430 99.982 10074034 27985 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-12 11:24:13] CVMFS is ok
[2026-03-12 11:24:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 11:24:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 11:24:13] Further information can be found at the LHC@home message board.
[2026-03-12 11:24:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 11:24:13] Checking for apptainer binary...
[2026-03-12 11:24:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 11:24:13] Running /usr/bin/apptainer --version
[2026-03-12 11:24:13] apptainer version 1.3.2-1.el7
[2026-03-12 11:24:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 11:24:14] c-206-19.aglt2.org
[2026-03-12 11:24:14] apptainer works
[2026-03-12 11:24:14] Set ATHENA_PROC_NUMBER=8
[2026-03-12 11:24:14] Set ATHENA_CORE_NUMBER=8
[2026-03-12 11:24:14] Starting ATLAS job with PandaID=7039662253
[2026-03-12 11:24:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:13:26 (31959): wrapper (7.7.26015): starting
12:13:26 (31959): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 12:13:26] Arguments: --nthreads 8
[2026-03-12 12:13:26] Threads: 8
[2026-03-12 12:13:26] This job has been restarted, cleaning up previous attempt
[2026-03-12 12:13:26] Checking for CVMFS
[2026-03-12 12:13:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 12:13:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 12:13:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 12:13:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 12:13:26] 2.11.2.0 8814 270527 148716 157206 3 1 15307802 18432001 1 130560 0 175604288 99.982 10075378 27987 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-12 12:13:26] CVMFS is ok
[2026-03-12 12:13:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 12:13:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 12:13:26] Further information can be found at the LHC@home message board.
[2026-03-12 12:13:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 12:13:26] Checking for apptainer binary...
[2026-03-12 12:13:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 12:13:26] Running /usr/bin/apptainer --version
[2026-03-12 12:13:26] apptainer version 1.3.2-1.el7
[2026-03-12 12:13:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 12:13:28] c-206-19.aglt2.org
[2026-03-12 12:13:28] apptainer works
[2026-03-12 12:13:28] Set ATHENA_PROC_NUMBER=8
[2026-03-12 12:13:28] Set ATHENA_CORE_NUMBER=8
[2026-03-12 12:13:28] Starting ATLAS job with PandaID=7039662253
[2026-03-12 12:13:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 14:37:00]  *** The last 200 lines of the pilot log: ***
[2026-03-12 14:37:00] 2026-03-12 18:36:09,315 | INFO     | sum of deviations: 2758932552.5
[2026-03-12 14:37:00] 2026-03-12 18:36:09,315 | INFO     | mean x: 1773336891.5
[2026-03-12 14:37:00] 2026-03-12 18:36:09,315 | INFO     | mean y: 2476125.625
[2026-03-12 14:37:00] 2026-03-12 18:36:09,315 | INFO     | intersect: -9128986179.573883
[2026-03-12 14:37:00] 2026-03-12 18:36:09,315 | INFO     | chi2: 0.0003276933252778125
[2026-03-12 14:37:00] 2026-03-12 18:36:09,315 | INFO     | current chi2=0.0003276933252778125 (change=25.66968652712874 %)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,315 | INFO     | sum of square deviations: 471562330.0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,316 | INFO     | sum of deviations: 2246806106.9999995
[2026-03-12 14:37:00] 2026-03-12 18:36:09,316 | INFO     | mean x: 1773337044.0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,316 | INFO     | mean y: 2477340.695652174
[2026-03-12 14:37:00] 2026-03-12 18:36:09,316 | INFO     | intersect: -8446765202.126899
[2026-03-12 14:37:00] 2026-03-12 18:36:09,316 | INFO     | chi2: 0.00023028014757414027
[2026-03-12 14:37:00] 2026-03-12 18:36:09,317 | INFO     | current chi2=0.00023028014757414027 (change=29.7269337485245 %)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,317 | INFO     | sum of square deviations: 412686807.5
[2026-03-12 14:37:00] 2026-03-12 18:36:09,317 | INFO     | sum of deviations: 1823029468.9999998
[2026-03-12 14:37:00] 2026-03-12 18:36:09,317 | INFO     | mean x: 1773337196.5
[2026-03-12 14:37:00] 2026-03-12 18:36:09,317 | INFO     | mean y: 2478436.890909091
[2026-03-12 14:37:00] 2026-03-12 18:36:09,318 | INFO     | intersect: -7831176307.920247
[2026-03-12 14:37:00] 2026-03-12 18:36:09,318 | INFO     | chi2: 0.00016282343102955456
[2026-03-12 14:37:00] 2026-03-12 18:36:09,318 | INFO     | current chi2=0.00016282343102955456 (change=29.293326956405373 %)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,318 | INFO     | sum of square deviations: 358927660.0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,318 | INFO     | sum of deviations: 1471491348.9999986
[2026-03-12 14:37:00] 2026-03-12 18:36:09,319 | INFO     | mean x: 1773337349.0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,319 | INFO     | mean y: 2479434.180952381
[2026-03-12 14:37:00] 2026-03-12 18:36:09,319 | INFO     | intersect: -7267650061.863157
[2026-03-12 14:37:00] 2026-03-12 18:36:09,319 | INFO     | chi2: 0.00011695993366518831
[2026-03-12 14:37:00] 2026-03-12 18:36:09,319 | INFO     | current chi2=0.00011695993366518831 (change=28.167627395126832 %)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,319 | INFO     | sum of square deviations: 310052325.0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,320 | INFO     | sum of deviations: 1152505269.0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,320 | INFO     | mean x: 1773337501.5
[2026-03-12 14:37:00] 2026-03-12 18:36:09,320 | INFO     | mean y: 2480428.96
[2026-03-12 14:37:00] 2026-03-12 18:36:09,320 | INFO     | intersect: -6589248287.133471
[2026-03-12 14:37:00] 2026-03-12 18:36:09,320 | INFO     | chi2: 6.198876151756621e-05
[2026-03-12 14:37:00] 2026-03-12 18:36:09,320 | INFO     | current chi2=6.198876151756621e-05 (change=47.00000284283984 %)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,321 | INFO     | sum of square deviations: 265828240.0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,321 | INFO     | sum of deviations: 956703991.9999993
[2026-03-12 14:37:00] 2026-03-12 18:36:09,321 | INFO     | mean x: 1773337654.0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,321 | INFO     | mean y: 2481099.2210526317
[2026-03-12 14:37:00] 2026-03-12 18:36:09,321 | INFO     | intersect: -6379682107.91493
[2026-03-12 14:37:00] 2026-03-12 18:36:09,321 | INFO     | chi2: 4.684147217265957e-05
[2026-03-12 14:37:00] 2026-03-12 18:36:09,322 | INFO     | current chi2=4.684147217265957e-05 (change=24.435541175660116 %)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,322 | INFO     | left removable region: 90
[2026-03-12 14:37:00] 2026-03-12 18:36:09,322 | INFO     | sum of square deviations: 26400495.0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,322 | INFO     | sum of deviations: 123142072.50000001
[2026-03-12 14:37:00] 2026-03-12 18:36:09,322 | INFO     | mean x: 1773338843.5
[2026-03-12 14:37:00] 2026-03-12 18:36:09,322 | INFO     | mean y: 2485739.340909091
[2026-03-12 14:37:00] 2026-03-12 18:36:09,322 | INFO     | intersect: -8269049337.306069
[2026-03-12 14:37:00] 2026-03-12 18:36:09,322 | INFO     | chi2: 1.5296756050940875e-05
[2026-03-12 14:37:00] 2026-03-12 18:36:09,323 | INFO     | current memory leak: 4.66 B/s (using 44 data points, chi2=0.00)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,323 | INFO     | could have reported an average CPU frequency of 2089 MHz (8 samples)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,323 | INFO     | ..............................
[2026-03-12 14:37:00] 2026-03-12 18:36:09,323 | INFO     | . Timing measurements:
[2026-03-12 14:37:00] 2026-03-12 18:36:09,323 | INFO     | . get job = 0 s
[2026-03-12 14:37:00] 2026-03-12 18:36:09,323 | INFO     | . initial setup = 1 s
[2026-03-12 14:37:00] 2026-03-12 18:36:09,323 | INFO     | . payload setup = 6 s
[2026-03-12 14:37:00] 2026-03-12 18:36:09,324 | INFO     | . stage-in = 0 s
[2026-03-12 14:37:00] 2026-03-12 18:36:09,324 | INFO     | . payload execution = 8522 s
[2026-03-12 14:37:00] 2026-03-12 18:36:09,324 | INFO     | . stage-out = 1 s
[2026-03-12 14:37:00] 2026-03-12 18:36:09,324 | INFO     | . log creation = 0 s
[2026-03-12 14:37:00] 2026-03-12 18:36:09,324 | INFO     | ..............................
[2026-03-12 14:37:00] 2026-03-12 18:36:09,504 | WARNING  | process 17916 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 14:37:00] 2026-03-12 18:36:09,504 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7039662253/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,608 | INFO     | 
[2026-03-12 14:37:00] 2026-03-12 18:36:09,608 | INFO     | job summary report
[2026-03-12 14:37:00] 2026-03-12 18:36:09,608 | INFO     | --------------------------------------------------
[2026-03-12 14:37:00] 2026-03-12 18:36:09,608 | INFO     | PanDA job id: 7039662253
[2026-03-12 14:37:00] 2026-03-12 18:36:09,608 | INFO     | task id: 48700906
[2026-03-12 14:37:00] 2026-03-12 18:36:09,609 | INFO     | errors: (none)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,609 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 14:37:00] 2026-03-12 18:36:09,609 | INFO     | pilot state: finished 
[2026-03-12 14:37:00] 2026-03-12 18:36:09,609 | INFO     | transexitcode: 0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,609 | INFO     | exeerrorcode: 0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,610 | INFO     | exeerrordiag: 
[2026-03-12 14:37:00] 2026-03-12 18:36:09,610 | INFO     | exitcode: 0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,610 | INFO     | exitmsg: OK
[2026-03-12 14:37:00] 2026-03-12 18:36:09,610 | INFO     | cpuconsumptiontime: 64817 s
[2026-03-12 14:37:00] 2026-03-12 18:36:09,610 | INFO     | nevents: 400
[2026-03-12 14:37:00] 2026-03-12 18:36:09,610 | INFO     | neventsw: 0
[2026-03-12 14:37:00] 2026-03-12 18:36:09,610 | INFO     | pid: 17916
[2026-03-12 14:37:00] 2026-03-12 18:36:09,611 | INFO     | pgrp: 17916
[2026-03-12 14:37:00] 2026-03-12 18:36:09,611 | INFO     | corecount: 8
[2026-03-12 14:37:00] 2026-03-12 18:36:09,611 | INFO     | event service: False
[2026-03-12 14:37:00] 2026-03-12 18:36:09,611 | INFO     | sizes: {0: 2279636, 1: 2280097, 11: 2280097, 8533: 2307912, 8535: 2316910, 8538: 2317288}
[2026-03-12 14:37:00] 2026-03-12 18:36:09,611 | INFO     | --------------------------------------------------
[2026-03-12 14:37:00] 2026-03-12 18:36:09,611 | INFO     | 
[2026-03-12 14:37:00] 2026-03-12 18:36:09,612 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-12 14:37:00] 2026-03-12 18:36:09,624 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,625 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,625 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,625 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,625 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,625 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,625 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,626 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,626 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,626 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,626 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,626 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,626 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,626 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,627 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,627 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,627 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,627 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,627 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,627 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 14:37:00] 2026-03-12 18:36:09,628 | INFO     | job 7039662253 has completed (purged errors)
[2026-03-12 14:37:00] 2026-03-12 18:36:09,628 | INFO     | overall cleanup function is called
[2026-03-12 14:37:00] 2026-03-12 18:36:09,631 | INFO     | number of running child processes to parent process 17916: 1
[2026-03-12 14:37:00] 2026-03-12 18:36:09,631 | INFO     | maximum number of monitored processes: 6
[2026-03-12 14:37:00] 2026-03-12 18:36:09,631 | INFO     | aborting job monitoring since job object (job id=7039662253) has expired
[2026-03-12 14:37:00] 2026-03-12 18:36:10,635 | INFO     | --- collectZombieJob: --- 10, [17916]
[2026-03-12 14:37:00] 2026-03-12 18:36:10,636 | INFO     | zombie collector waiting for pid 17916
[2026-03-12 14:37:00] 2026-03-12 18:36:10,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 14:37:00] 2026-03-12 18:36:10,636 | INFO     | collected zombie processes
[2026-03-12 14:37:00] 2026-03-12 18:36:10,636 | INFO     | will attempt to kill all subprocesses of pid=17916
[2026-03-12 14:37:00] 2026-03-12 18:36:10,769 | INFO     | process IDs to be killed: [17916] (in reverse order)
[2026-03-12 14:37:00] 2026-03-12 18:36:10,806 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 14:37:00] 2026-03-12 18:36:10,806 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 14:37:00] 2026-03-12 18:36:10,809 | INFO     | did not find any defunct processes belonging to 17916
[2026-03-12 14:37:00] 2026-03-12 18:36:10,811 | INFO     | did not find any defunct processes belonging to 17916
[2026-03-12 14:37:00] 2026-03-12 18:36:10,811 | INFO     | ready for new job
[2026-03-12 14:37:00] 2026-03-12 18:36:10,811 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 14:37:00] 2026-03-12 18:36:10,813 | INFO     | **************************************
[2026-03-12 14:37:00] 2026-03-12 18:36:10,813 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 14:37:00] 2026-03-12 18:36:10,813 | INFO     | **************************************
[2026-03-12 14:37:00] 2026-03-12 18:36:10,813 | INFO     | 
[2026-03-12 14:37:00] 2026-03-12 18:36:10,814 | INFO     | architecture information:
[2026-03-12 14:37:00] 2026-03-12 18:36:10,814 | INFO     | executing command: cat /etc/os-release
[2026-03-12 14:37:00] 2026-03-12 18:36:10,823 | INFO     | cat /etc/os-release:
[2026-03-12 14:37:00] NAME="CentOS Linux"
[2026-03-12 14:37:00] VERSION="7 (Core)"
[2026-03-12 14:37:00] ID="centos"
[2026-03-12 14:37:00] ID_LIKE="rhel fedora"
[2026-03-12 14:37:00] VERSION_ID="7"
[2026-03-12 14:37:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 14:37:00] ANSI_COLOR="0;31"
[2026-03-12 14:37:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 14:37:00] HOME_URL="https://www.centos.org/"
[2026-03-12 14:37:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 14:37:00] 
[2026-03-12 14:37:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 14:37:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 14:37:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 14:37:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 14:37:00] 
[2026-03-12 14:37:00] 2026-03-12 18:36:10,823 | INFO     | **************************************
[2026-03-12 14:37:00] 2026-03-12 18:36:11,326 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-12 14:37:00] 2026-03-12 18:36:11,338 | INFO     | sufficient remaining disk space (28177334272 B)
[2026-03-12 14:37:00] 2026-03-12 18:36:11,338 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 14:37:00] 2026-03-12 18:36:11,338 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 14:37:00] 2026-03-12 18:36:11,338 | INFO     | update_server=False
[2026-03-12 14:37:00] 2026-03-12 18:36:11,338 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 14:37:00] 2026-03-12 18:36:11,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 14:37:00] 2026-03-12 18:36:11,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 14:37:00] 2026-03-12 18:36:11,339 | INFO     | aborting loop
[2026-03-12 14:37:00] 2026-03-12 18:36:11,401 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 14:37:00] 2026-03-12 18:36:11,609 | INFO     | all data control threads have been joined
[2026-03-12 14:37:00] 2026-03-12 18:36:12,323 | INFO     | all job control threads have been joined
[2026-03-12 14:37:00] 2026-03-12 18:36:12,342 | INFO     | [job] queue monitor thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:12,343 | INFO     | [job] retrieve thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:12,345 | INFO     | [job] job monitor thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:12,356 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:12,475 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:12,614 | INFO     | [data] control thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:12,724 | INFO     | all payload control threads have been joined
[2026-03-12 14:37:00] 2026-03-12 18:36:12,974 | INFO     | [payload] validate_post thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:13,124 | INFO     | [data] copytool_in thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:13,151 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:13,328 | INFO     | [job] control thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:13,407 | INFO     | [data] copytool_out thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:13,470 | INFO     | [payload] failed_post thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:13,558 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:13,588 | INFO     | [job] validate thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:13,729 | INFO     | [payload] control thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:14,522 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 14:37:00] 2026-03-12 18:36:18,526 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 14:37:00] 2026-03-12 18:36:42,366 | INFO     | PID=10788 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 14:37:00] 2026-03-12 18:36:42,366 | INFO     | .. there are 3 such processes running
[2026-03-12 14:37:00] 2026-03-12 18:36:42,372 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 14:37:00] 2026-03-12 18:36:42,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 14:37:00] 2026-03-12 18:36:42,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 14:37:00] 2026-03-12 18:36:53,431 | INFO     | [monitor] cgroup control has ended
[2026-03-12 14:37:00] 2026-03-12 18:36:55,064 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139643245107008)>', '<ExcThread(monitor, started 139642523342592)>']
[2026-03-12 14:37:00] 2026-03-12 18:36:55,433 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 14:37:00] 2026-03-12 18:36:55,433 | INFO     | [monitor] control thread has ended
[2026-03-12 14:37:00] 2026-03-12 18:37:00,084 | INFO     | all workflow threads have been joined
[2026-03-12 14:37:00] 2026-03-12 18:37:00,084 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 14:37:00] 2026-03-12 18:37:00,084 | INFO     | traces error code: 0
[2026-03-12 14:37:00] 2026-03-12 18:37:00,085 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 14:37:00] 2026-03-12 18:37:00,186 [wrapper] ==== pilot stdout END ====
[2026-03-12 14:37:00] 2026-03-12 18:37:00,189 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 14:37:00] 2026-03-12 18:37:00,192 [wrapper] pilotpid: 10788
[2026-03-12 14:37:00] 2026-03-12 18:37:00,194 [wrapper] Pilot exit status: 0
[2026-03-12 14:37:00] 2026-03-12 18:37:00,203 [wrapper] pandaids: 7039662253 7039662253
[2026-03-12 14:37:00] 2026-03-12 18:37:00,229 [wrapper] cleanup supervisor_pilot 29019 10790
[2026-03-12 14:37:00] 2026-03-12 18:37:00,232 [wrapper] Test setup, not cleaning
[2026-03-12 14:37:00] 2026-03-12 18:37:00,234 [wrapper] apfmon messages muted
[2026-03-12 14:37:00] 2026-03-12 18:37:00,237 [wrapper] ==== wrapper stdout END ====
[2026-03-12 14:37:00] 2026-03-12 18:37:00,239 [wrapper] ==== wrapper stderr END ====
[2026-03-12 14:37:00]  *** Error codes and diagnostics ***
[2026-03-12 14:37:00]     "exeErrorCode": 0,
[2026-03-12 14:37:00]     "exeErrorDiag": "",
[2026-03-12 14:37:00]     "pilotErrorCode": 0,
[2026-03-12 14:37:00]     "pilotErrorDiag": "",
[2026-03-12 14:37:00]  *** Listing of results directory ***
[2026-03-12 14:37:00] total 524060
[2026-03-12 14:37:00] drwx------ 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas      5111 Mar  4 06:53 queuedata.json
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas    584627 Mar  4 06:53 pilot3.tar.gz
[2026-03-12 14:37:00] -rwx------ 1 boincer umatlas     36322 Mar  4 06:53 runpilot2-wrapper.sh
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas       100 Mar 12 11:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 14:37:00] -rwxr-xr-x 1 boincer umatlas      7986 Mar 12 11:24 run_atlas
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas       105 Mar 12 11:24 job.xml
[2026-03-12 14:37:00] -rw-r--r-- 3 boincer umatlas 191127590 Mar 12 11:24 EVNT.48700904._000017.pool.root.1
[2026-03-12 14:37:00] -rw-r--r-- 3 boincer umatlas 191127590 Mar 12 11:24 ATLAS.root_0
[2026-03-12 14:37:00] -rw-r--r-- 2 boincer umatlas     15845 Mar 12 11:24 start_atlas.sh
[2026-03-12 14:37:00] drwxrwx--x 2 boincer umatlas      4096 Mar 12 11:24 shared
[2026-03-12 14:37:00] -rw-r--r-- 2 boincer umatlas    597936 Mar 12 11:24 input.tar.gz
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas         0 Mar 12 11:24 boinc_lockfile
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas      2517 Mar 12 12:13 pandaJob.out
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas        57 Mar 12 12:13 setup.sh.local
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas   1006536 Mar 12 12:13 agis_schedconf.cvmfs.json
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas       445 Mar 12 12:13 workernode_map.json
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas      5952 Mar 12 14:29 init_data.xml
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas 147245744 Mar 12 14:35 HITS.48700906._002865.pool.root.1
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas       530 Mar 12 14:35 boinc_task_state.xml
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas        96 Mar 12 14:35 pilot_heartbeat.json
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas      1045 Mar 12 14:36 memory_monitor_summary.json
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas   1511578 Mar 12 14:36 agis_ddmendpoints.agis.ALL.json
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas    379898 Mar 12 14:36 log.48700906._002865.job.log.tgz.1
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas      6408 Mar 12 14:36 heartbeat.json
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas        28 Mar 12 14:36 wrapper_checkpoint.txt
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas      8192 Mar 12 14:36 boinc_mmap_file
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas      4817 Mar 12 14:37 pilotlog.txt
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas   1216377 Mar 12 14:37 log.48700906._002865.job.log.1
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas       357 Mar 12 14:37 output.list
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas       620 Mar 12 14:37 runtime_log
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas   1617920 Mar 12 14:37 result.tar.gz
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas       783 Mar 12 14:37 ZnQLDmlyzH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmHHILDmQoJX6n.diag
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas      9426 Mar 12 14:37 runtime_log.err
[2026-03-12 14:37:00] -rw-r--r-- 1 boincer umatlas     23221 Mar 12 14:37 stderr.txt
[2026-03-12 14:37:00] HITS file was successfully produced:
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas 147245744 Mar 12 14:35 shared/HITS.pool.root.1
[2026-03-12 14:37:00]  *** Contents of shared directory: ***
[2026-03-12 14:37:00] total 332632
[2026-03-12 14:37:00] -rw-r--r-- 3 boincer umatlas 191127590 Mar 12 11:24 ATLAS.root_0
[2026-03-12 14:37:00] -rw-r--r-- 2 boincer umatlas     15845 Mar 12 11:24 start_atlas.sh
[2026-03-12 14:37:00] -rw-r--r-- 2 boincer umatlas    597936 Mar 12 11:24 input.tar.gz
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas 147245744 Mar 12 14:35 HITS.pool.root.1
[2026-03-12 14:37:00] -rw------- 1 boincer umatlas   1617920 Mar 12 14:37 result.tar.gz
14:37:02 (31959): run_atlas exited; CPU time 64919.761532
14:37:02 (31959): called boinc_finish(0)

</stderr_txt>
]]>

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