Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:47:12 (3360851): wrapper (7.7.26015): starting
15:47:12 (3360851): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 15:47:12] Arguments: --nthreads 3
[2026-03-13 15:47:12] Threads: 3
[2026-03-13 15:47:12] Checking for CVMFS
[2026-03-13 15:47:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 15:47:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 15:47:12] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 15:47:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 15:47:12] 2.9.2.0 64072 22861 88888 157242 1 50 29347304 36864001 0 130560 0 8820360 99.981 861837 10316 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 15:47:12] CVMFS is ok
[2026-03-13 15:47:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 15:47:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 15:47:12] Further information can be found at the LHC@home message board.
[2026-03-13 15:47:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 15:47:12] Checking for apptainer binary...
[2026-03-13 15:47:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 15:47:12] Running /usr/bin/apptainer --version
[2026-03-13 15:47:12] apptainer version 1.4.1-1.1
[2026-03-13 15:47:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 15:47:12] thA383
[2026-03-13 15:47:12] apptainer works
[2026-03-13 15:47:13] Set ATHENA_PROC_NUMBER=3
[2026-03-13 15:47:13] Set ATHENA_CORE_NUMBER=3
[2026-03-13 15:47:13] Starting ATLAS job with PandaID=7038629737
[2026-03-13 15:47:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 16:54:37]  *** The last 200 lines of the pilot log: ***
[2026-03-13 16:54:37] 2026-03-13 15:54:17,660 | INFO     | job 7038629737 has completed (purged errors)
[2026-03-13 16:54:37] 2026-03-13 15:54:17,660 | INFO     | overall cleanup function is called
[2026-03-13 16:54:37] 2026-03-13 15:54:18,666 | INFO     | --- collectZombieJob: --- 10, [3369318]
[2026-03-13 16:54:37] 2026-03-13 15:54:18,666 | INFO     | zombie collector waiting for pid 3369318
[2026-03-13 16:54:37] 2026-03-13 15:54:18,667 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 16:54:37] 2026-03-13 15:54:18,667 | INFO     | collected zombie processes
[2026-03-13 16:54:37] 2026-03-13 15:54:18,667 | INFO     | will attempt to kill all subprocesses of pid=3369318
[2026-03-13 16:54:37] 2026-03-13 15:54:18,719 | INFO     | process IDs to be killed: [3369318] (in reverse order)
[2026-03-13 16:54:37] 2026-03-13 15:54:18,748 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 16:54:37] 2026-03-13 15:54:18,749 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 16:54:37] 2026-03-13 15:54:18,750 | INFO     | did not find any defunct processes belonging to 3369318
[2026-03-13 16:54:37] 2026-03-13 15:54:18,751 | INFO     | did not find any defunct processes belonging to 3369318
[2026-03-13 16:54:37] 2026-03-13 15:54:18,752 | INFO     | ready for new job
[2026-03-13 16:54:37] 2026-03-13 15:54:18,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 16:54:37] 2026-03-13 15:54:18,752 | INFO     | **************************************
[2026-03-13 16:54:37] 2026-03-13 15:54:18,752 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 16:54:37] 2026-03-13 15:54:18,752 | INFO     | **************************************
[2026-03-13 16:54:37] 2026-03-13 15:54:18,752 | INFO     | 
[2026-03-13 16:54:37] 2026-03-13 15:54:18,753 | INFO     | architecture information:
[2026-03-13 16:54:37] 2026-03-13 15:54:18,753 | INFO     | executing command: cat /etc/os-release
[2026-03-13 16:54:37] 2026-03-13 15:54:18,763 | INFO     | cat /etc/os-release:
[2026-03-13 16:54:37] NAME="CentOS Linux"
[2026-03-13 16:54:37] VERSION="7 (Core)"
[2026-03-13 16:54:37] ID="centos"
[2026-03-13 16:54:37] ID_LIKE="rhel fedora"
[2026-03-13 16:54:37] VERSION_ID="7"
[2026-03-13 16:54:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 16:54:37] ANSI_COLOR="0;31"
[2026-03-13 16:54:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 16:54:37] HOME_URL="https://www.centos.org/"
[2026-03-13 16:54:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 16:54:37] 
[2026-03-13 16:54:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 16:54:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 16:54:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 16:54:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 16:54:37] 
[2026-03-13 16:54:37] 2026-03-13 15:54:18,763 | INFO     | **************************************
[2026-03-13 16:54:37] 2026-03-13 15:54:19,266 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 16:54:37] 2026-03-13 15:54:19,280 | INFO     | sufficient remaining disk space (226964275200 B)
[2026-03-13 16:54:37] 2026-03-13 15:54:19,280 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 16:54:37] 2026-03-13 15:54:19,281 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 16:54:37] 2026-03-13 15:54:19,281 | INFO     | update_server=False
[2026-03-13 16:54:37] 2026-03-13 15:54:19,281 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 16:54:37] 2026-03-13 15:54:19,281 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-13 16:54:37] 2026-03-13 15:54:19,281 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 16:54:37] 2026-03-13 15:54:19,281 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 16:54:37] 2026-03-13 15:54:19,281 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 16:54:37] 2026-03-13 15:54:19,281 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 16:54:37] 2026-03-13 15:54:19,282 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 16:54:37] 2026-03-13 15:54:19,377 | INFO     | all data control threads have been joined
[2026-03-13 16:54:37] 2026-03-13 15:54:19,528 | INFO     | all job control threads have been joined
[2026-03-13 16:54:37] 2026-03-13 15:54:20,171 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 16:54:37] 2026-03-13 15:54:20,171 | INFO     | aborting loop
[2026-03-13 16:54:37] 2026-03-13 15:54:20,286 | INFO     | [job] retrieve thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:20,287 | INFO     | [job] queue monitor thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:20,383 | INFO     | [data] control thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:20,424 | INFO     | all payload control threads have been joined
[2026-03-13 16:54:37] 2026-03-13 15:54:20,533 | INFO     | [job] control thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:20,693 | INFO     | [payload] validate_post thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:21,176 | INFO     | [job] job monitor thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:21,287 | INFO     | [data] copytool_out thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:21,343 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:21,401 | INFO     | [job] validate thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:21,418 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:21,429 | INFO     | [payload] control thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:21,448 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:21,635 | INFO     | [data] copytool_in thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:21,737 | INFO     | [payload] failed_post thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:22,615 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 16:54:37] 2026-03-13 15:54:26,618 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:28,143 | INFO     | [monitor] cgroup control has ended
[2026-03-13 16:54:37] 2026-03-13 15:54:29,802 | INFO     | job.realtimelogging is not enabled
[2026-03-13 16:54:37] 2026-03-13 15:54:30,803 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 16:54:37] 2026-03-13 15:54:32,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140375713134400)>', '<ExcThread(monitor, started 140375066916608)>']
[2026-03-13 16:54:37] 2026-03-13 15:54:32,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 16:54:37] 2026-03-13 15:54:32,345 | INFO     | [monitor] control thread has ended
[2026-03-13 16:54:37] 2026-03-13 15:54:37,083 | INFO     | all workflow threads have been joined
[2026-03-13 16:54:37] 2026-03-13 15:54:37,083 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 16:54:37] 2026-03-13 15:54:37,083 | INFO     | traces error code: 0
[2026-03-13 16:54:37] 2026-03-13 15:54:37,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 16:54:37] 2026-03-13 15:54:37,135 [wrapper] ==== pilot stdout END ====
[2026-03-13 16:54:37] 2026-03-13 15:54:37,137 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 16:54:37] 2026-03-13 15:54:37,140 [wrapper] pilotpid: 3364895
[2026-03-13 16:54:37] 2026-03-13 15:54:37,142 [wrapper] Pilot exit status: 0
[2026-03-13 16:54:37] 2026-03-13 15:54:37,149 [wrapper] pandaids: 7038629737
[2026-03-13 16:54:37] 2026-03-13 15:54:37,167 [wrapper] cleanup supervisor_pilot 3375005 3364896
[2026-03-13 16:54:37] 2026-03-13 15:54:37,170 [wrapper] Test setup, not cleaning
[2026-03-13 16:54:37] 2026-03-13 15:54:37,172 [wrapper] apfmon messages muted
[2026-03-13 16:54:37] 2026-03-13 15:54:37,174 [wrapper] ==== wrapper stdout END ====
[2026-03-13 16:54:37] 2026-03-13 15:54:37,177 [wrapper] ==== wrapper stderr END ====
[2026-03-13 16:54:37]  *** Error codes and diagnostics ***
[2026-03-13 16:54:37]     "exeErrorCode": 0,
[2026-03-13 16:54:37]     "exeErrorDiag": "",
[2026-03-13 16:54:37]     "pilotErrorCode": 0,
[2026-03-13 16:54:37]     "pilotErrorDiag": "",
[2026-03-13 16:54:37]  *** Listing of results directory ***
[2026-03-13 16:54:37] total 338004
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc    584627 Mar  4 10:32 pilot3.tar.gz
[2026-03-13 16:54:37] -rwx------ 1 boinc boinc     36322 Mar  4 10:33 runpilot2-wrapper.sh
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc      5111 Mar  4 10:34 queuedata.json
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc       100 Mar 13 15:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 16:54:37] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 15:47 run_atlas
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc       105 Mar 13 15:47 job.xml
[2026-03-13 16:54:37] -rw-r--r-- 2 boinc boinc 191056271 Mar 13 15:47 EVNT.48700936._000128.pool.root.1
[2026-03-13 16:54:37] -rw-r--r-- 2 boinc boinc    597938 Mar 13 15:47 input.tar.gz
[2026-03-13 16:54:37] -rw-r--r-- 2 boinc boinc     15845 Mar 13 15:47 start_atlas.sh
[2026-03-13 16:54:37] drwxrwx--x 2 boinc boinc      4096 Mar 13 15:47 shared
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc         0 Mar 13 15:47 boinc_setup_complete
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc      6438 Mar 13 15:47 init_data.xml
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc         0 Mar 13 15:47 boinc_lockfile
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc      2508 Mar 13 15:47 pandaJob.out
[2026-03-13 16:54:37] -rw------- 1 boinc boinc   1006539 Mar 13 15:47 agis_schedconf.cvmfs.json
[2026-03-13 16:54:37] -rw------- 1 boinc boinc   1511578 Mar 13 15:47 agis_ddmendpoints.agis.ALL.json
[2026-03-13 16:54:37] -rw------- 1 boinc boinc       427 Mar 13 15:47 workernode_map.json
[2026-03-13 16:54:37] drwx------ 5 boinc boinc      4096 Mar 13 15:47 pilot3
[2026-03-13 16:54:37] -rw------- 1 boinc boinc        95 Mar 13 16:53 pilot_heartbeat.json
[2026-03-13 16:54:37] -rw------- 1 boinc boinc 149448646 Mar 13 16:53 HITS.48700938._003306.pool.root.1
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc       529 Mar 13 16:54 boinc_task_state.xml
[2026-03-13 16:54:37] -rw------- 1 boinc boinc      1022 Mar 13 16:54 memory_monitor_summary.json
[2026-03-13 16:54:37] -rw------- 1 boinc boinc    249150 Mar 13 16:54 log.48700938._003306.job.log.tgz.1
[2026-03-13 16:54:37] -rw------- 1 boinc boinc      6312 Mar 13 16:54 heartbeat.json
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc      8192 Mar 13 16:54 boinc_mmap_file
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc        27 Mar 13 16:54 wrapper_checkpoint.txt
[2026-03-13 16:54:37] -rw------- 1 boinc boinc      4624 Mar 13 16:54 pilotlog.txt
[2026-03-13 16:54:37] -rw------- 1 boinc boinc    597612 Mar 13 16:54 log.48700938._003306.job.log.1
[2026-03-13 16:54:37] -rw------- 1 boinc boinc       357 Mar 13 16:54 output.list
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc       620 Mar 13 16:54 runtime_log
[2026-03-13 16:54:37] -rw------- 1 boinc boinc    860160 Mar 13 16:54 result.tar.gz
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc      8896 Mar 13 16:54 runtime_log.err
[2026-03-13 16:54:37] -rw------- 1 boinc boinc       657 Mar 13 16:54 Rx4MDmPmxH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmH0JLDmzZmTTo.diag
[2026-03-13 16:54:37] -rw-r--r-- 1 boinc boinc     10824 Mar 13 16:54 stderr.txt
[2026-03-13 16:54:37] HITS file was successfully produced:
[2026-03-13 16:54:37] -rw------- 1 boinc boinc 149448646 Mar 13 16:53 shared/HITS.pool.root.1
[2026-03-13 16:54:37]  *** Contents of shared directory: ***
[2026-03-13 16:54:37] total 333976
[2026-03-13 16:54:37] -rw-r--r-- 2 boinc boinc 191056271 Mar 13 15:47 ATLAS.root_0
[2026-03-13 16:54:37] -rw-r--r-- 2 boinc boinc    597938 Mar 13 15:47 input.tar.gz
[2026-03-13 16:54:37] -rw-r--r-- 2 boinc boinc     15845 Mar 13 15:47 start_atlas.sh
[2026-03-13 16:54:37] -rw------- 1 boinc boinc 149448646 Mar 13 16:53 HITS.pool.root.1
[2026-03-13 16:54:37] -rw------- 1 boinc boinc    860160 Mar 13 16:54 result.tar.gz
16:54:38 (3360851): run_atlas exited; CPU time 11396.698990
16:54:38 (3360851): called boinc_finish(0)

</stderr_txt>
]]>

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