Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:51:07 (2131420): wrapper (7.7.26015): starting
02:51:07 (2131420): wrapper: running run_atlas (--nthreads 2)
[2026-03-13 02:51:07] Arguments: --nthreads 2
[2026-03-13 02:51:07] Threads: 2
[2026-03-13 02:51:07] Checking for CVMFS
[2026-03-13 02:51:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 02:51:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 02:51:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 02:51:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 02:51:07] 2.9.2.0 35068 22118 63644 157222 2 50 30372804 36864001 0 130560 0 6105087 99.976 827753 12711 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 02:51:07] CVMFS is ok
[2026-03-13 02:51:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 02:51:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 02:51:07] Further information can be found at the LHC@home message board.
[2026-03-13 02:51:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 02:51:07] Checking for apptainer binary...
[2026-03-13 02:51:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 02:51:07] Running /usr/bin/apptainer --version
[2026-03-13 02:51:07] apptainer version 1.4.1-1.1
[2026-03-13 02:51:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 02:51:07] legendA269
[2026-03-13 02:51:07] apptainer works
[2026-03-13 02:51:07] Set ATHENA_PROC_NUMBER=2
[2026-03-13 02:51:07] Set ATHENA_CORE_NUMBER=2
[2026-03-13 02:51:07] Starting ATLAS job with PandaID=7038578502
[2026-03-13 02:51:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 04:33:41]  *** The last 200 lines of the pilot log: ***
[2026-03-13 04:33:41] 2026-03-13 03:32:54,028 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 04:33:41] 2026-03-13 03:32:54,028 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 04:33:41] 2026-03-13 03:32:54,028 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 04:33:41] 2026-03-13 03:32:54,028 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 04:33:41] 2026-03-13 03:32:54,028 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 04:33:41] 2026-03-13 03:32:54,028 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 04:33:41] 2026-03-13 03:32:54,028 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 04:33:41] 2026-03-13 03:32:54,028 | INFO     | job 7038578502 has completed (purged errors)
[2026-03-13 04:33:41] 2026-03-13 03:32:54,028 | INFO     | overall cleanup function is called
[2026-03-13 04:33:41] 2026-03-13 03:32:55,034 | INFO     | --- collectZombieJob: --- 10, [2139860]
[2026-03-13 04:33:41] 2026-03-13 03:32:55,034 | INFO     | zombie collector waiting for pid 2139860
[2026-03-13 04:33:41] 2026-03-13 03:32:55,035 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 04:33:41] 2026-03-13 03:32:55,035 | INFO     | collected zombie processes
[2026-03-13 04:33:41] 2026-03-13 03:32:55,035 | INFO     | will attempt to kill all subprocesses of pid=2139860
[2026-03-13 04:33:41] 2026-03-13 03:32:55,067 | INFO     | process IDs to be killed: [2139860] (in reverse order)
[2026-03-13 04:33:41] 2026-03-13 03:32:55,087 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 04:33:41] 2026-03-13 03:32:55,088 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 04:33:41] 2026-03-13 03:32:55,091 | INFO     | did not find any defunct processes belonging to 2139860
[2026-03-13 04:33:41] 2026-03-13 03:32:55,094 | INFO     | did not find any defunct processes belonging to 2139860
[2026-03-13 04:33:41] 2026-03-13 03:32:55,094 | INFO     | ready for new job
[2026-03-13 04:33:41] 2026-03-13 03:32:55,094 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 04:33:41] 2026-03-13 03:32:55,096 | INFO     | **************************************
[2026-03-13 04:33:41] 2026-03-13 03:32:55,097 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 04:33:41] 2026-03-13 03:32:55,097 | INFO     | **************************************
[2026-03-13 04:33:41] 2026-03-13 03:32:55,097 | INFO     | 
[2026-03-13 04:33:41] 2026-03-13 03:32:55,098 | INFO     | architecture information:
[2026-03-13 04:33:41] 2026-03-13 03:32:55,099 | INFO     | executing command: cat /etc/os-release
[2026-03-13 04:33:41] 2026-03-13 03:32:55,128 | INFO     | cat /etc/os-release:
[2026-03-13 04:33:41] NAME="CentOS Linux"
[2026-03-13 04:33:41] VERSION="7 (Core)"
[2026-03-13 04:33:41] ID="centos"
[2026-03-13 04:33:41] ID_LIKE="rhel fedora"
[2026-03-13 04:33:41] VERSION_ID="7"
[2026-03-13 04:33:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 04:33:41] ANSI_COLOR="0;31"
[2026-03-13 04:33:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 04:33:41] HOME_URL="https://www.centos.org/"
[2026-03-13 04:33:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 04:33:41] 
[2026-03-13 04:33:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 04:33:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 04:33:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 04:33:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 04:33:41] 
[2026-03-13 04:33:41] 2026-03-13 03:32:55,129 | INFO     | **************************************
[2026-03-13 04:33:41] 2026-03-13 03:32:55,632 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 04:33:41] 2026-03-13 03:32:55,645 | INFO     | sufficient remaining disk space (329291661312 B)
[2026-03-13 04:33:41] 2026-03-13 03:32:55,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 04:33:41] 2026-03-13 03:32:55,645 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 04:33:41] 2026-03-13 03:32:55,645 | INFO     | update_server=False
[2026-03-13 04:33:41] 2026-03-13 03:32:55,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 04:33:41] 2026-03-13 03:32:55,645 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 04:33:41] 2026-03-13 03:32:56,128 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-13 04:33:41] 2026-03-13 03:32:56,129 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-13 04:33:41] 2026-03-13 03:32:56,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 04:33:41] 2026-03-13 03:32:56,129 | INFO     | will abort loop
[2026-03-13 04:33:41] 2026-03-13 03:32:56,314 | INFO     | all data control threads have been joined
[2026-03-13 04:33:41] 2026-03-13 03:32:56,426 | INFO     | all job control threads have been joined
[2026-03-13 04:33:41] 2026-03-13 03:32:56,648 | INFO     | [job] retrieve thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:56,670 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:56,692 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:56,751 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:56,763 | INFO     | all payload control threads have been joined
[2026-03-13 04:33:41] 2026-03-13 03:32:56,847 | INFO     | [data] copytool_in thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:57,120 | INFO     | [payload] validate_post thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:57,135 | INFO     | [job] job monitor thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:57,320 | INFO     | [data] control thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:57,432 | INFO     | [job] control thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:57,651 | INFO     | [data] copytool_out thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:57,769 | INFO     | [payload] control thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:57,965 | INFO     | [payload] failed_post thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:58,010 | INFO     | [job] validate thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:32:58,611 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 04:33:41] 2026-03-13 03:32:58,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 04:33:41] 2026-03-13 03:32:59,617 | INFO     | [job] queue monitor thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:33:02,772 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:33:06,659 | INFO     | job.realtimelogging is not enabled
[2026-03-13 04:33:41] 2026-03-13 03:33:07,665 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 04:33:41] 2026-03-13 03:33:26,224 | INFO     | PID=2135450 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 04:33:41] 2026-03-13 03:33:26,224 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 04:33:41] 2026-03-13 03:33:26,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 04:33:41] 2026-03-13 03:33:26,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 04:33:41] 2026-03-13 03:33:35,187 | INFO     | [monitor] cgroup control has ended
[2026-03-13 04:33:41] 2026-03-13 03:33:35,842 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140404890998592)>', '<ExcThread(monitor, started 140404376704768)>']
[2026-03-13 04:33:41] 2026-03-13 03:33:36,270 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 04:33:41] 2026-03-13 03:33:36,270 | INFO     | [monitor] control thread has ended
[2026-03-13 04:33:41] 2026-03-13 03:33:40,868 | INFO     | all workflow threads have been joined
[2026-03-13 04:33:41] 2026-03-13 03:33:40,868 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 04:33:41] 2026-03-13 03:33:40,869 | INFO     | traces error code: 0
[2026-03-13 04:33:41] 2026-03-13 03:33:40,869 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 04:33:41] 2026-03-13 03:33:40,913 [wrapper] ==== pilot stdout END ====
[2026-03-13 04:33:41] 2026-03-13 03:33:40,916 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 04:33:41] 2026-03-13 03:33:40,918 [wrapper] pilotpid: 2135450
[2026-03-13 04:33:41] 2026-03-13 03:33:40,921 [wrapper] Pilot exit status: 0
[2026-03-13 04:33:41] 2026-03-13 03:33:40,927 [wrapper] pandaids: 7038578502
[2026-03-13 04:33:41] 2026-03-13 03:33:40,940 [wrapper] cleanup supervisor_pilot 2145462 2135451
[2026-03-13 04:33:41] 2026-03-13 03:33:40,942 [wrapper] Test setup, not cleaning
[2026-03-13 04:33:41] 2026-03-13 03:33:40,944 [wrapper] apfmon messages muted
[2026-03-13 04:33:41] 2026-03-13 03:33:40,946 [wrapper] ==== wrapper stdout END ====
[2026-03-13 04:33:41] 2026-03-13 03:33:40,949 [wrapper] ==== wrapper stderr END ====
[2026-03-13 04:33:41]  *** Error codes and diagnostics ***
[2026-03-13 04:33:41]     "exeErrorCode": 0,
[2026-03-13 04:33:41]     "exeErrorDiag": "",
[2026-03-13 04:33:41]     "pilotErrorCode": 0,
[2026-03-13 04:33:41]     "pilotErrorDiag": "",
[2026-03-13 04:33:41]  *** Listing of results directory ***
[2026-03-13 04:33:41] total 339368
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc    584627 Mar  4 10:32 pilot3.tar.gz
[2026-03-13 04:33:41] -rwx------ 1 boinc boinc     36322 Mar  4 10:32 runpilot2-wrapper.sh
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc      5111 Mar  4 10:32 queuedata.json
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc       100 Mar 13 02:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 04:33:41] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 02:51 run_atlas
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc       105 Mar 13 02:51 job.xml
[2026-03-13 04:33:41] -rw-r--r-- 2 boinc boinc 191450594 Mar 13 02:51 EVNT.48700856._000129.pool.root.1
[2026-03-13 04:33:41] -rw-r--r-- 2 boinc boinc    597942 Mar 13 02:51 input.tar.gz
[2026-03-13 04:33:41] -rw-r--r-- 2 boinc boinc     15845 Mar 13 02:51 start_atlas.sh
[2026-03-13 04:33:41] drwxrwx--x 2 boinc boinc      4096 Mar 13 02:51 shared
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc         0 Mar 13 02:51 boinc_setup_complete
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc      6208 Mar 13 02:51 init_data.xml
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc         0 Mar 13 02:51 boinc_lockfile
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc      2521 Mar 13 02:51 pandaJob.out
[2026-03-13 04:33:41] -rw------- 1 boinc boinc   1006514 Mar 13 02:51 agis_schedconf.cvmfs.json
[2026-03-13 04:33:41] -rw------- 1 boinc boinc   1511578 Mar 13 02:51 agis_ddmendpoints.agis.ALL.json
[2026-03-13 04:33:41] -rw------- 1 boinc boinc       423 Mar 13 02:51 workernode_map.json
[2026-03-13 04:33:41] drwx------ 5 boinc boinc      4096 Mar 13 02:51 pilot3
[2026-03-13 04:33:41] -rw------- 1 boinc boinc 149856634 Mar 13 04:32 HITS.48700858._003311.pool.root.1
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc       529 Mar 13 04:32 boinc_task_state.xml
[2026-03-13 04:33:41] -rw------- 1 boinc boinc      1017 Mar 13 04:32 memory_monitor_summary.json
[2026-03-13 04:33:41] -rw------- 1 boinc boinc        95 Mar 13 04:32 pilot_heartbeat.json
[2026-03-13 04:33:41] -rw------- 1 boinc boinc    256319 Mar 13 04:32 log.48700858._003311.job.log.tgz.1
[2026-03-13 04:33:41] -rw------- 1 boinc boinc      6307 Mar 13 04:32 heartbeat.json
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc      8192 Mar 13 04:33 boinc_mmap_file
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc        27 Mar 13 04:33 wrapper_checkpoint.txt
[2026-03-13 04:33:41] -rw------- 1 boinc boinc      5006 Mar 13 04:33 pilotlog.txt
[2026-03-13 04:33:41] -rw------- 1 boinc boinc    883846 Mar 13 04:33 log.48700858._003311.job.log.1
[2026-03-13 04:33:41] -rw------- 1 boinc boinc       357 Mar 13 04:33 output.list
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc       620 Mar 13 04:33 runtime_log
[2026-03-13 04:33:41] -rw------- 1 boinc boinc   1157120 Mar 13 04:33 result.tar.gz
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc      8916 Mar 13 04:33 runtime_log.err
[2026-03-13 04:33:41] -rw------- 1 boinc boinc       661 Mar 13 04:33 AQuKDmDmxH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmP0HLDmteNs2m.diag
[2026-03-13 04:33:41] -rw-r--r-- 1 boinc boinc     11845 Mar 13 04:33 stderr.txt
[2026-03-13 04:33:41] HITS file was successfully produced:
[2026-03-13 04:33:41] -rw------- 1 boinc boinc 149856634 Mar 13 04:32 shared/HITS.pool.root.1
[2026-03-13 04:33:41]  *** Contents of shared directory: ***
[2026-03-13 04:33:41] total 335052
[2026-03-13 04:33:41] -rw-r--r-- 2 boinc boinc 191450594 Mar 13 02:51 ATLAS.root_0
[2026-03-13 04:33:41] -rw-r--r-- 2 boinc boinc    597942 Mar 13 02:51 input.tar.gz
[2026-03-13 04:33:41] -rw-r--r-- 2 boinc boinc     15845 Mar 13 02:51 start_atlas.sh
[2026-03-13 04:33:41] -rw------- 1 boinc boinc 149856634 Mar 13 04:32 HITS.pool.root.1
[2026-03-13 04:33:41] -rw------- 1 boinc boinc   1157120 Mar 13 04:33 result.tar.gz
04:33:42 (2131420): run_atlas exited; CPU time 11741.350836
04:33:42 (2131420): called boinc_finish(0)

</stderr_txt>
]]>

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