Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:37:12 (1256892): wrapper (7.7.26015): starting
04:37:12 (1256892): wrapper: running run_atlas (--nthreads 4)
[2026-03-13 04:37:12] Arguments: --nthreads 4
[2026-03-13 04:37:12] Threads: 4
[2026-03-13 04:37:12] Checking for CVMFS
[2026-03-13 04:37:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 04:37:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 04:37:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 04:37:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 04:37:13] 2.9.2.0 3142 7104 100456 157225 1 50 30638605 36864000 0 130560 0 3514228 99.986 272829 4201 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 04:37:13] CVMFS is ok
[2026-03-13 04:37:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 04:37:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 04:37:13] Further information can be found at the LHC@home message board.
[2026-03-13 04:37:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 04:37:13] Checking for apptainer binary...
[2026-03-13 04:37:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 04:37:13] Running /usr/bin/apptainer --version
[2026-03-13 04:37:13] apptainer version 1.4.1-1.1
[2026-03-13 04:37:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 04:37:13] belleA253c
[2026-03-13 04:37:13] apptainer works
[2026-03-13 04:37:13] Set ATHENA_PROC_NUMBER=4
[2026-03-13 04:37:13] Set ATHENA_CORE_NUMBER=4
[2026-03-13 04:37:13] Starting ATLAS job with PandaID=7038352046
[2026-03-13 04:37:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 05:59:52]  *** The last 200 lines of the pilot log: ***
[2026-03-13 05:59:52] 2026-03-13 04:59:20,296 | INFO     | job 7038352046 has completed (purged errors)
[2026-03-13 05:59:52] 2026-03-13 04:59:20,296 | INFO     | overall cleanup function is called
[2026-03-13 05:59:52] 2026-03-13 04:59:21,303 | INFO     | --- collectZombieJob: --- 10, [1265506]
[2026-03-13 05:59:52] 2026-03-13 04:59:21,303 | INFO     | zombie collector waiting for pid 1265506
[2026-03-13 05:59:52] 2026-03-13 04:59:21,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 05:59:52] 2026-03-13 04:59:21,303 | INFO     | collected zombie processes
[2026-03-13 05:59:52] 2026-03-13 04:59:21,303 | INFO     | will attempt to kill all subprocesses of pid=1265506
[2026-03-13 05:59:52] 2026-03-13 04:59:21,344 | INFO     | process IDs to be killed: [1265506] (in reverse order)
[2026-03-13 05:59:52] 2026-03-13 04:59:21,379 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 05:59:52] 2026-03-13 04:59:21,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 05:59:52] 2026-03-13 04:59:21,381 | INFO     | did not find any defunct processes belonging to 1265506
[2026-03-13 05:59:52] 2026-03-13 04:59:21,382 | INFO     | did not find any defunct processes belonging to 1265506
[2026-03-13 05:59:52] 2026-03-13 04:59:21,382 | INFO     | ready for new job
[2026-03-13 05:59:52] 2026-03-13 04:59:21,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 05:59:52] 2026-03-13 04:59:21,383 | INFO     | **************************************
[2026-03-13 05:59:52] 2026-03-13 04:59:21,383 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 05:59:52] 2026-03-13 04:59:21,383 | INFO     | **************************************
[2026-03-13 05:59:52] 2026-03-13 04:59:21,383 | INFO     | 
[2026-03-13 05:59:52] 2026-03-13 04:59:21,383 | INFO     | architecture information:
[2026-03-13 05:59:52] 2026-03-13 04:59:21,383 | INFO     | executing command: cat /etc/os-release
[2026-03-13 05:59:52] 2026-03-13 04:59:21,398 | INFO     | cat /etc/os-release:
[2026-03-13 05:59:52] NAME="CentOS Linux"
[2026-03-13 05:59:52] VERSION="7 (Core)"
[2026-03-13 05:59:52] ID="centos"
[2026-03-13 05:59:52] ID_LIKE="rhel fedora"
[2026-03-13 05:59:52] VERSION_ID="7"
[2026-03-13 05:59:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 05:59:52] ANSI_COLOR="0;31"
[2026-03-13 05:59:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 05:59:52] HOME_URL="https://www.centos.org/"
[2026-03-13 05:59:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 05:59:52] 
[2026-03-13 05:59:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 05:59:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 05:59:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 05:59:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 05:59:52] 
[2026-03-13 05:59:52] 2026-03-13 04:59:21,399 | INFO     | **************************************
[2026-03-13 05:59:52] 2026-03-13 04:59:21,902 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 05:59:52] 2026-03-13 04:59:21,921 | INFO     | sufficient remaining disk space (327338164224 B)
[2026-03-13 05:59:52] 2026-03-13 04:59:21,921 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 05:59:52] 2026-03-13 04:59:21,921 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 05:59:52] 2026-03-13 04:59:21,921 | INFO     | update_server=False
[2026-03-13 05:59:52] 2026-03-13 04:59:21,921 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 05:59:52] 2026-03-13 04:59:21,921 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 05:59:52] 2026-03-13 04:59:22,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 05:59:52] 2026-03-13 04:59:22,042 | INFO     | aborting loop
[2026-03-13 05:59:52] 2026-03-13 04:59:22,446 | INFO     | all job control threads have been joined
[2026-03-13 05:59:52] 2026-03-13 04:59:22,513 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 05:59:52] 2026-03-13 04:59:22,862 | INFO     | all data control threads have been joined
[2026-03-13 05:59:52] 2026-03-13 04:59:22,927 | INFO     | [job] retrieve thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:22,927 | INFO     | [job] queue monitor thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:23,032 | INFO     | all payload control threads have been joined
[2026-03-13 05:59:52] 2026-03-13 04:59:23,047 | INFO     | [job] job monitor thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:23,127 | INFO     | [payload] validate_post thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:23,292 | INFO     | [payload] failed_post thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:23,452 | INFO     | [job] control thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:23,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 05:59:52] 2026-03-13 04:59:23,722 | INFO     | [job] validate thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:23,829 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:23,868 | INFO     | [data] control thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:23,921 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:24,038 | INFO     | [payload] control thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:24,040 | INFO     | [data] copytool_in thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:24,094 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:24,311 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:24,519 | INFO     | [data] copytool_out thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:27,692 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 05:59:52] 2026-03-13 04:59:32,819 | INFO     | [monitor] cgroup control has ended
[2026-03-13 05:59:52] 2026-03-13 04:59:33,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140060784846656)>', '<ExcThread(monitor, started 140059982407424)>']
[2026-03-13 05:59:52] 2026-03-13 04:59:38,516 | INFO     | all workflow threads have been joined
[2026-03-13 05:59:52] 2026-03-13 04:59:38,516 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 05:59:52] 2026-03-13 04:59:38,516 | INFO     | traces error code: 0
[2026-03-13 05:59:52] 2026-03-13 04:59:38,516 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 05:59:52] 2026-03-13 04:59:52,523 | INFO     | PID=1261000 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 05:59:52] 2026-03-13 04:59:52,524 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 05:59:52] 2026-03-13 04:59:52,524 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 05:59:52] 2026-03-13 04:59:52,524 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 05:59:52] 2026-03-13 04:59:52,524 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 05:59:52] 2026-03-13 04:59:52,524 | INFO     | [monitor] control thread has ended
[2026-03-13 05:59:52] 2026-03-13 04:59:52,599 [wrapper] ==== pilot stdout END ====
[2026-03-13 05:59:52] 2026-03-13 04:59:52,603 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 05:59:52] 2026-03-13 04:59:52,608 [wrapper] pilotpid: 1261000
[2026-03-13 05:59:52] 2026-03-13 04:59:52,612 [wrapper] Pilot exit status: 0
[2026-03-13 05:59:52] 2026-03-13 04:59:52,625 [wrapper] pandaids: 7038352046
[2026-03-13 05:59:52] 2026-03-13 04:59:52,647 [wrapper] cleanup supervisor_pilot 1270888 1261001
[2026-03-13 05:59:52] 2026-03-13 04:59:52,651 [wrapper] Test setup, not cleaning
[2026-03-13 05:59:52] 2026-03-13 04:59:52,655 [wrapper] apfmon messages muted
[2026-03-13 05:59:52] 2026-03-13 04:59:52,659 [wrapper] ==== wrapper stdout END ====
[2026-03-13 05:59:52] 2026-03-13 04:59:52,663 [wrapper] ==== wrapper stderr END ====
[2026-03-13 05:59:52]  *** Error codes and diagnostics ***
[2026-03-13 05:59:52]     "exeErrorCode": 0,
[2026-03-13 05:59:52]     "exeErrorDiag": "",
[2026-03-13 05:59:52]     "pilotErrorCode": 0,
[2026-03-13 05:59:52]     "pilotErrorDiag": "",
[2026-03-13 05:59:52]  *** Listing of results directory ***
[2026-03-13 05:59:52] total 494144
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc    584627 Mar  4 09:44 pilot3.tar.gz
[2026-03-13 05:59:52] -rwx------ 1 boinc boinc     36322 Mar  4 09:45 runpilot2-wrapper.sh
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc      5111 Mar  4 09:45 queuedata.json
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc       100 Mar 13 04:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 05:59:52] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 04:37 run_atlas
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc       105 Mar 13 04:37 job.xml
[2026-03-13 05:59:52] -rw-r--r-- 2 boinc boinc 279713034 Mar 13 04:37 EVNT.48220117._000126.pool.root.1
[2026-03-13 05:59:52] -rw-r--r-- 2 boinc boinc    597968 Mar 13 04:37 input.tar.gz
[2026-03-13 05:59:52] -rw-r--r-- 2 boinc boinc     15845 Mar 13 04:37 start_atlas.sh
[2026-03-13 05:59:52] drwxrwx--x 2 boinc boinc      4096 Mar 13 04:37 shared
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc         0 Mar 13 04:37 boinc_setup_complete
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc      6379 Mar 13 04:37 init_data.xml
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc         0 Mar 13 04:37 boinc_lockfile
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc      2572 Mar 13 04:37 pandaJob.out
[2026-03-13 05:59:52] -rw------- 1 boinc boinc   1006514 Mar 13 04:37 agis_schedconf.cvmfs.json
[2026-03-13 05:59:52] -rw------- 1 boinc boinc   1511578 Mar 13 04:37 agis_ddmendpoints.agis.ALL.json
[2026-03-13 05:59:52] -rw------- 1 boinc boinc       430 Mar 13 04:37 workernode_map.json
[2026-03-13 05:59:52] drwx------ 5 boinc boinc      4096 Mar 13 04:37 pilot3
[2026-03-13 05:59:52] -rw------- 1 boinc boinc 220412526 Mar 13 05:58 HITS.48838447._004726.pool.root.1
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc       529 Mar 13 05:59 boinc_task_state.xml
[2026-03-13 05:59:52] -rw------- 1 boinc boinc      1020 Mar 13 05:59 memory_monitor_summary.json
[2026-03-13 05:59:52] -rw------- 1 boinc boinc    258485 Mar 13 05:59 log.48838447._004726.job.log.tgz.1
[2026-03-13 05:59:52] -rw------- 1 boinc boinc      6321 Mar 13 05:59 heartbeat.json
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc        27 Mar 13 05:59 wrapper_checkpoint.txt
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc      8192 Mar 13 05:59 boinc_mmap_file
[2026-03-13 05:59:52] -rw------- 1 boinc boinc       747 Mar 13 05:59 pilotlog.txt
[2026-03-13 05:59:52] -rw------- 1 boinc boinc        95 Mar 13 05:59 pilot_heartbeat.json
[2026-03-13 05:59:52] -rw------- 1 boinc boinc    720778 Mar 13 05:59 log.48838447._004726.job.log.1
[2026-03-13 05:59:52] -rw------- 1 boinc boinc       357 Mar 13 05:59 output.list
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc       620 Mar 13 05:59 runtime_log
[2026-03-13 05:59:52] -rw------- 1 boinc boinc    993280 Mar 13 05:59 result.tar.gz
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc      8916 Mar 13 05:59 runtime_log.err
[2026-03-13 05:59:52] -rw------- 1 boinc boinc       661 Mar 13 05:59 JwBMDmr2wH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmarHLDmr7J03m.diag
[2026-03-13 05:59:52] -rw-r--r-- 1 boinc boinc     10810 Mar 13 05:59 stderr.txt
[2026-03-13 05:59:52] HITS file was successfully produced:
[2026-03-13 05:59:52] -rw------- 1 boinc boinc 220412526 Mar 13 05:58 shared/HITS.pool.root.1
[2026-03-13 05:59:52]  *** Contents of shared directory: ***
[2026-03-13 05:59:52] total 489988
[2026-03-13 05:59:52] -rw-r--r-- 2 boinc boinc 279713034 Mar 13 04:37 ATLAS.root_0
[2026-03-13 05:59:52] -rw-r--r-- 2 boinc boinc    597968 Mar 13 04:37 input.tar.gz
[2026-03-13 05:59:52] -rw-r--r-- 2 boinc boinc     15845 Mar 13 04:37 start_atlas.sh
[2026-03-13 05:59:52] -rw------- 1 boinc boinc 220412526 Mar 13 05:58 HITS.pool.root.1
[2026-03-13 05:59:52] -rw------- 1 boinc boinc    993280 Mar 13 05:59 result.tar.gz
05:59:54 (1256892): run_atlas exited; CPU time 18493.364885
05:59:54 (1256892): called boinc_finish(0)

</stderr_txt>
]]>

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