Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:53:01 (2220216): wrapper (7.7.26015): starting
02:53:01 (2220216): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 02:53:01] Arguments: --nthreads 3
[2026-03-13 02:53:01] Threads: 3
[2026-03-13 02:53:01] Checking for CVMFS
[2026-03-13 02:53:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 02:53:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 02:53:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 02:53:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 02:53:01] 2.9.2.0 12764 15332 87324 157222 0 50 29693848 36864000 0 130560 0 6185433 99.983 571882 12829 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 02:53:01] CVMFS is ok
[2026-03-13 02:53:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 02:53:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 02:53:01] Further information can be found at the LHC@home message board.
[2026-03-13 02:53:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 02:53:01] Checking for apptainer binary...
[2026-03-13 02:53:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 02:53:01] Running /usr/bin/apptainer --version
[2026-03-13 02:53:01] apptainer version 1.4.1-1.1
[2026-03-13 02:53:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 02:53:01] thA327
[2026-03-13 02:53:01] apptainer works
[2026-03-13 02:53:01] Set ATHENA_PROC_NUMBER=3
[2026-03-13 02:53:01] Set ATHENA_CORE_NUMBER=3
[2026-03-13 02:53:01] Starting ATLAS job with PandaID=7038578403
[2026-03-13 02:53:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 04:03:33]  *** The last 200 lines of the pilot log: ***
[2026-03-13 04:03:33] 2026-03-13 03:03:01,607 | INFO     | process IDs to be killed: [2228688] (in reverse order)
[2026-03-13 04:03:33] 2026-03-13 03:03:01,633 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 04:03:33] 2026-03-13 03:03:01,633 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 04:03:33] 2026-03-13 03:03:01,634 | INFO     | did not find any defunct processes belonging to 2228688
[2026-03-13 04:03:33] 2026-03-13 03:03:01,635 | INFO     | did not find any defunct processes belonging to 2228688
[2026-03-13 04:03:33] 2026-03-13 03:03:01,635 | INFO     | ready for new job
[2026-03-13 04:03:33] 2026-03-13 03:03:01,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 04:03:33] 2026-03-13 03:03:01,636 | INFO     | **************************************
[2026-03-13 04:03:33] 2026-03-13 03:03:01,636 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 04:03:33] 2026-03-13 03:03:01,636 | INFO     | **************************************
[2026-03-13 04:03:33] 2026-03-13 03:03:01,636 | INFO     | 
[2026-03-13 04:03:33] 2026-03-13 03:03:01,636 | INFO     | architecture information:
[2026-03-13 04:03:33] 2026-03-13 03:03:01,637 | INFO     | executing command: cat /etc/os-release
[2026-03-13 04:03:33] 2026-03-13 03:03:01,646 | INFO     | cat /etc/os-release:
[2026-03-13 04:03:33] NAME="CentOS Linux"
[2026-03-13 04:03:33] VERSION="7 (Core)"
[2026-03-13 04:03:33] ID="centos"
[2026-03-13 04:03:33] ID_LIKE="rhel fedora"
[2026-03-13 04:03:33] VERSION_ID="7"
[2026-03-13 04:03:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 04:03:33] ANSI_COLOR="0;31"
[2026-03-13 04:03:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 04:03:33] HOME_URL="https://www.centos.org/"
[2026-03-13 04:03:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 04:03:33] 
[2026-03-13 04:03:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 04:03:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 04:03:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 04:03:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 04:03:33] 
[2026-03-13 04:03:33] 2026-03-13 03:03:01,646 | INFO     | **************************************
[2026-03-13 04:03:33] 2026-03-13 03:03:02,149 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 04:03:33] 2026-03-13 03:03:02,162 | INFO     | sufficient remaining disk space (373873967104 B)
[2026-03-13 04:03:33] 2026-03-13 03:03:02,163 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 04:03:33] 2026-03-13 03:03:02,163 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 04:03:33] 2026-03-13 03:03:02,163 | INFO     | update_server=False
[2026-03-13 04:03:33] 2026-03-13 03:03:02,163 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 04:03:33] 2026-03-13 03:03:02,163 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 04:03:33] 2026-03-13 03:03:02,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 04:03:33] 2026-03-13 03:03:02,163 | INFO     | aborting loop
[2026-03-13 04:03:33] 2026-03-13 03:03:02,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 04:03:33] 2026-03-13 03:03:02,647 | INFO     | all data control threads have been joined
[2026-03-13 04:03:33] 2026-03-13 03:03:02,875 | INFO     | all job control threads have been joined
[2026-03-13 04:03:33] 2026-03-13 03:03:02,998 | INFO     | all payload control threads have been joined
[2026-03-13 04:03:33] 2026-03-13 03:03:03,169 | INFO     | [job] queue monitor thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:03,169 | INFO     | [job] retrieve thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:03,169 | INFO     | [job] job monitor thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:03,177 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:03,261 | INFO     | [data] copytool_in thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:03,442 | INFO     | [payload] validate_post thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:03,650 | INFO     | [data] control thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:03,785 | INFO     | [payload] failed_post thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:03,881 | INFO     | [job] control thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:03,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 04:03:33] 2026-03-13 03:03:04,003 | INFO     | [payload] control thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:04,169 | INFO     | [data] copytool_out thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:04,517 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:04,553 | INFO     | [job] validate thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:04,653 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:07,923 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:12,527 | INFO     | job.realtimelogging is not enabled
[2026-03-13 04:03:33] 2026-03-13 03:03:13,533 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 04:03:33] 2026-03-13 03:03:17,369 | INFO     | [monitor] cgroup control has ended
[2026-03-13 04:03:33] 2026-03-13 03:03:18,898 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140327149422400)>', '<ExcThread(monitor, started 140326287165184)>']
[2026-03-13 04:03:33] 2026-03-13 03:03:23,918 | INFO     | all workflow threads have been joined
[2026-03-13 04:03:33] 2026-03-13 03:03:23,918 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 04:03:33] 2026-03-13 03:03:23,918 | INFO     | traces error code: 0
[2026-03-13 04:03:33] 2026-03-13 03:03:23,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 04:03:33] 2026-03-13 03:03:33,033 | INFO     | PID=2224255 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 04:03:33] 2026-03-13 03:03:33,033 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 04:03:33] 2026-03-13 03:03:33,033 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 04:03:33] 2026-03-13 03:03:33,033 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 04:03:33] 2026-03-13 03:03:33,033 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 04:03:33] 2026-03-13 03:03:33,034 | CRITICAL | thread 'MainThread' is not alive
[2026-03-13 04:03:33] 2026-03-13 03:03:33,034 | INFO     | [monitor] control thread has ended
[2026-03-13 04:03:33] 2026-03-13 03:03:33,079 [wrapper] ==== pilot stdout END ====
[2026-03-13 04:03:33] 2026-03-13 03:03:33,082 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 04:03:33] 2026-03-13 03:03:33,085 [wrapper] pilotpid: 2224255
[2026-03-13 04:03:33] 2026-03-13 03:03:33,087 [wrapper] Pilot exit status: 0
[2026-03-13 04:03:33] 2026-03-13 03:03:33,095 [wrapper] pandaids: 7038578403
[2026-03-13 04:03:33] 2026-03-13 03:03:33,112 [wrapper] cleanup supervisor_pilot 2233715 2224256
[2026-03-13 04:03:33] 2026-03-13 03:03:33,114 [wrapper] Test setup, not cleaning
[2026-03-13 04:03:33] 2026-03-13 03:03:33,117 [wrapper] apfmon messages muted
[2026-03-13 04:03:33] 2026-03-13 03:03:33,120 [wrapper] ==== wrapper stdout END ====
[2026-03-13 04:03:33] 2026-03-13 03:03:33,122 [wrapper] ==== wrapper stderr END ====
[2026-03-13 04:03:33]  *** Error codes and diagnostics ***
[2026-03-13 04:03:33]     "exeErrorCode": 0,
[2026-03-13 04:03:33]     "exeErrorDiag": "",
[2026-03-13 04:03:33]     "pilotErrorCode": 0,
[2026-03-13 04:03:33]     "pilotErrorDiag": "",
[2026-03-13 04:03:33]  *** Listing of results directory ***
[2026-03-13 04:03:33] total 340008
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc    584627 Mar  4 10:32 pilot3.tar.gz
[2026-03-13 04:03:33] -rwx------ 1 boinc boinc     36322 Mar  4 10:32 runpilot2-wrapper.sh
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc      5111 Mar  4 10:32 queuedata.json
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc       100 Mar 13 02:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 04:03:33] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 02:53 run_atlas
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc       105 Mar 13 02:53 job.xml
[2026-03-13 04:03:33] -rw-r--r-- 2 boinc boinc 189059751 Mar 13 02:53 EVNT.48700856._000125.pool.root.1
[2026-03-13 04:03:33] -rw-r--r-- 2 boinc boinc    597935 Mar 13 02:53 input.tar.gz
[2026-03-13 04:03:33] -rw-r--r-- 2 boinc boinc     15845 Mar 13 02:53 start_atlas.sh
[2026-03-13 04:03:33] drwxrwx--x 2 boinc boinc      4096 Mar 13 02:53 shared
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc         0 Mar 13 02:53 boinc_setup_complete
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc      6445 Mar 13 02:53 init_data.xml
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc         0 Mar 13 02:53 boinc_lockfile
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc      2521 Mar 13 02:53 pandaJob.out
[2026-03-13 04:03:33] -rw------- 1 boinc boinc   1006514 Mar 13 02:53 agis_schedconf.cvmfs.json
[2026-03-13 04:03:33] -rw------- 1 boinc boinc   1511578 Mar 13 02:53 agis_ddmendpoints.agis.ALL.json
[2026-03-13 04:03:33] -rw------- 1 boinc boinc       423 Mar 13 02:53 workernode_map.json
[2026-03-13 04:03:33] drwx------ 5 boinc boinc      4096 Mar 13 02:53 pilot3
[2026-03-13 04:03:33] -rw------- 1 boinc boinc 153440156 Mar 13 04:02 HITS.48700858._003212.pool.root.1
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc       529 Mar 13 04:02 boinc_task_state.xml
[2026-03-13 04:03:33] -rw------- 1 boinc boinc      1014 Mar 13 04:02 memory_monitor_summary.json
[2026-03-13 04:03:33] -rw------- 1 boinc boinc    246744 Mar 13 04:02 log.48700858._003212.job.log.tgz.1
[2026-03-13 04:03:33] -rw------- 1 boinc boinc      6294 Mar 13 04:03 heartbeat.json
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc        27 Mar 13 04:03 wrapper_checkpoint.txt
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc      8192 Mar 13 04:03 boinc_mmap_file
[2026-03-13 04:03:33] -rw------- 1 boinc boinc       817 Mar 13 04:03 pilotlog.txt
[2026-03-13 04:03:33] -rw------- 1 boinc boinc        95 Mar 13 04:03 pilot_heartbeat.json
[2026-03-13 04:03:33] -rw------- 1 boinc boinc    622741 Mar 13 04:03 log.48700858._003212.job.log.1
[2026-03-13 04:03:33] -rw------- 1 boinc boinc       357 Mar 13 04:03 output.list
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc       620 Mar 13 04:03 runtime_log
[2026-03-13 04:03:33] -rw------- 1 boinc boinc    890880 Mar 13 04:03 result.tar.gz
[2026-03-13 04:03:33] -rw------- 1 boinc boinc       657 Mar 13 04:03 z10LDm4lxH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmEzHLDmS8dchn.diag
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc      8896 Mar 13 04:03 runtime_log.err
[2026-03-13 04:03:33] -rw-r--r-- 1 boinc boinc     10266 Mar 13 04:03 stderr.txt
[2026-03-13 04:03:33] HITS file was successfully produced:
[2026-03-13 04:03:33] -rw------- 1 boinc boinc 153440156 Mar 13 04:02 shared/HITS.pool.root.1
[2026-03-13 04:03:33]  *** Contents of shared directory: ***
[2026-03-13 04:03:33] total 335956
[2026-03-13 04:03:33] -rw-r--r-- 2 boinc boinc 189059751 Mar 13 02:53 ATLAS.root_0
[2026-03-13 04:03:33] -rw-r--r-- 2 boinc boinc    597935 Mar 13 02:53 input.tar.gz
[2026-03-13 04:03:33] -rw-r--r-- 2 boinc boinc     15845 Mar 13 02:53 start_atlas.sh
[2026-03-13 04:03:33] -rw------- 1 boinc boinc 153440156 Mar 13 04:02 HITS.pool.root.1
[2026-03-13 04:03:33] -rw------- 1 boinc boinc    890880 Mar 13 04:03 result.tar.gz
04:03:54 (2220216): run_atlas exited; CPU time 11808.229523
04:03:54 (2220216): called boinc_finish(0)

</stderr_txt>
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