Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
19:48:23 (3584012): wrapper (7.7.26015): starting
19:48:23 (3584012): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 19:48:23] Arguments: --nthreads 4
[2026-03-12 19:48:23] Threads: 4
[2026-03-12 19:48:23] Checking for CVMFS
[2026-03-12 19:48:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 19:48:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 19:48:23] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 19:48:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 19:48:23] 2.13.3.0 3889861 22222 53948 157221 3 50 3669021 6144000 6454 130560 0 48125145 99.996 839825 1051 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2026-03-12 19:48:23] CVMFS is ok
[2026-03-12 19:48:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 19:48:23] Checking for apptainer binary...
[2026-03-12 19:48:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 19:48:23] Running /usr/bin/apptainer --version
[2026-03-12 19:48:24] apptainer version 1.4.5
[2026-03-12 19:48:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 19:48:24] Starfish-Cruncher
[2026-03-12 19:48:24] apptainer works
[2026-03-12 19:48:24] Set ATHENA_PROC_NUMBER=4
[2026-03-12 19:48:24] Set ATHENA_CORE_NUMBER=4
[2026-03-12 19:48:24] Starting ATLAS job with PandaID=7037673102
[2026-03-12 19:48:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 21:33:57]  *** The last 200 lines of the pilot log: ***
[2026-03-12 21:33:57] 2026-03-13 02:33:12,645 | INFO     | mean x: 1773366052.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,645 | INFO     | mean y: 2313778.9223300973
[2026-03-12 21:33:57] 2026-03-13 02:33:12,645 | INFO     | intersect: -6897147189.635667
[2026-03-12 21:33:57] 2026-03-13 02:33:12,645 | INFO     | chi2: 1.3159644682977392
[2026-03-12 21:33:57] 2026-03-13 02:33:12,645 | INFO     | sum of square deviations: 291817564.5
[2026-03-12 21:33:57] 2026-03-13 02:33:12,645 | INFO     | sum of deviations: 1355654392.5000021
[2026-03-12 21:33:57] 2026-03-13 02:33:12,645 | INFO     | mean x: 1773365899.5
[2026-03-12 21:33:57] 2026-03-13 02:33:12,646 | INFO     | mean y: 2313900.3163265307
[2026-03-12 21:33:57] 2026-03-13 02:33:12,646 | INFO     | intersect: -8235953989.027575
[2026-03-12 21:33:57] 2026-03-13 02:33:12,646 | INFO     | chi2: 1.3174096708822756
[2026-03-12 21:33:57] 2026-03-13 02:33:12,646 | INFO     | current chi2=1.3174096708822756 (change=-0.10982079070917732 %)
[2026-03-12 21:33:57] 2026-03-13 02:33:12,646 | INFO     | right removable region: 97
[2026-03-12 21:33:57] 2026-03-13 02:33:12,646 | INFO     | sum of square deviations: 291817564.5
[2026-03-12 21:33:57] 2026-03-13 02:33:12,646 | INFO     | sum of deviations: -7719661996.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,647 | INFO     | mean x: 1773366204.5
[2026-03-12 21:33:57] 2026-03-13 02:33:12,647 | INFO     | mean y: 2341854.897959184
[2026-03-12 21:33:57] 2026-03-13 02:33:12,647 | INFO     | intersect: 46914486150.685936
[2026-03-12 21:33:57] 2026-03-13 02:33:12,647 | INFO     | chi2: 0.0529149532475729
[2026-03-12 21:33:57] 2026-03-13 02:33:12,647 | INFO     | current chi2=0.0529149532475729 (change=95.97899832994572 %)
[2026-03-12 21:33:57] 2026-03-13 02:33:12,647 | INFO     | sum of square deviations: 249388862.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,647 | INFO     | sum of deviations: -4213051010.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,647 | INFO     | mean x: 1773366357.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,648 | INFO     | mean y: 2329360.7849462368
[2026-03-12 21:33:57] 2026-03-13 02:33:12,648 | INFO     | intersect: 29960695831.29264
[2026-03-12 21:33:57] 2026-03-13 02:33:12,648 | INFO     | chi2: 0.020424400318285157
[2026-03-12 21:33:57] 2026-03-13 02:33:12,648 | INFO     | current chi2=0.020424400318285157 (change=61.40145825561704 %)
[2026-03-12 21:33:57] 2026-03-13 02:33:12,648 | INFO     | sum of square deviations: 211285822.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,648 | INFO     | sum of deviations: -2195309907.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,648 | INFO     | mean x: 1773366509.5
[2026-03-12 21:33:57] 2026-03-13 02:33:12,648 | INFO     | mean y: 2321321.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,649 | INFO     | intersect: 18428020831.719463
[2026-03-12 21:33:57] 2026-03-13 02:33:12,649 | INFO     | chi2: 0.009492656604879522
[2026-03-12 21:33:57] 2026-03-13 02:33:12,649 | INFO     | current chi2=0.009492656604879522 (change=53.5229604935763 %)
[2026-03-12 21:33:57] 2026-03-13 02:33:12,649 | INFO     | sum of square deviations: 177275882.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,649 | INFO     | sum of deviations: -1267215586.0000002
[2026-03-12 21:33:57] 2026-03-13 02:33:12,649 | INFO     | mean x: 1773366662.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,649 | INFO     | mean y: 2317156.2891566264
[2026-03-12 21:33:57] 2026-03-13 02:33:12,649 | INFO     | intersect: 12678818034.052067
[2026-03-12 21:33:57] 2026-03-13 02:33:12,650 | INFO     | chi2: 0.007416625606247371
[2026-03-12 21:33:57] 2026-03-13 02:33:12,650 | INFO     | current chi2=0.007416625606247371 (change=21.869863043028502 %)
[2026-03-12 21:33:57] 2026-03-13 02:33:12,650 | INFO     | left removable region: 40
[2026-03-12 21:33:57] 2026-03-13 02:33:12,650 | INFO     | sum of square deviations: 57407588.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,650 | INFO     | sum of deviations: 42790340.999999985
[2026-03-12 21:33:57] 2026-03-13 02:33:12,650 | INFO     | mean x: 1773367089.0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,650 | INFO     | mean y: 2310251.298245614
[2026-03-12 21:33:57] 2026-03-13 02:33:12,650 | INFO     | intersect: -1319518188.1144557
[2026-03-12 21:33:57] 2026-03-13 02:33:12,650 | INFO     | chi2: 1.6382713208837376e-05
[2026-03-12 21:33:57] 2026-03-13 02:33:12,650 | INFO     | current memory leak: 0.75 B/s (using 57 data points, chi2=0.00)
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | could have reported an average CPU frequency of 3618 MHz (7 samples)
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | ..............................
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | . Timing measurements:
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | . get job = 0 s
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | . initial setup = 6 s
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | . payload setup = 4 s
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | . stage-in = 0 s
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | . payload execution = 6247 s
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | . stage-out = 0 s
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | . log creation = 0 s
[2026-03-12 21:33:57] 2026-03-13 02:33:12,651 | INFO     | ..............................
[2026-03-12 21:33:57] 2026-03-13 02:33:12,721 | INFO     | 
[2026-03-12 21:33:57] 2026-03-13 02:33:12,721 | INFO     | job summary report
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | --------------------------------------------------
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | PanDA job id: 7037673102
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | task id: 48700874
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | errors: (none)
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | pilot state: finished 
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | transexitcode: 0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | exeerrorcode: 0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | exeerrordiag: 
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | exitcode: 0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | exitmsg: OK
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | cpuconsumptiontime: 23804 s
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | nevents: 400
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | neventsw: 0
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | pid: 3593026
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | pgrp: 3593026
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | corecount: 4
[2026-03-12 21:33:57] 2026-03-13 02:33:12,722 | INFO     | event service: False
[2026-03-12 21:33:57] 2026-03-13 02:33:12,723 | INFO     | sizes: {0: 2279780, 1: 2280241, 11: 2280241, 6256: 2307324, 6257: 2316336, 6259: 2316392, 6260: 2316714}
[2026-03-12 21:33:57] 2026-03-13 02:33:12,723 | INFO     | --------------------------------------------------
[2026-03-12 21:33:57] 2026-03-13 02:33:12,723 | INFO     | 
[2026-03-12 21:33:57] 2026-03-13 02:33:12,723 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2026-03-12 21:33:57] 2026-03-13 02:33:12,745 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,746 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,747 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 21:33:57] 2026-03-13 02:33:12,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,747 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 21:33:57] 2026-03-13 02:33:12,747 | INFO     | job 7037673102 has completed (purged errors)
[2026-03-12 21:33:57] 2026-03-13 02:33:12,747 | INFO     | overall cleanup function is called
[2026-03-12 21:33:57] 2026-03-13 02:33:13,754 | INFO     | --- collectZombieJob: --- 10, [3593026]
[2026-03-12 21:33:57] 2026-03-13 02:33:13,754 | INFO     | zombie collector waiting for pid 3593026
[2026-03-12 21:33:57] 2026-03-13 02:33:13,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 21:33:57] 2026-03-13 02:33:13,754 | INFO     | collected zombie processes
[2026-03-12 21:33:57] 2026-03-13 02:33:13,754 | INFO     | will attempt to kill all subprocesses of pid=3593026
[2026-03-12 21:33:57] 2026-03-13 02:33:13,926 | INFO     | process IDs to be killed: [3593026] (in reverse order)
[2026-03-12 21:33:57] 2026-03-13 02:33:13,986 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 21:33:57] 2026-03-13 02:33:13,986 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 21:33:57] 2026-03-13 02:33:13,991 | INFO     | did not find any defunct processes belonging to 3593026
[2026-03-12 21:33:57] 2026-03-13 02:33:13,996 | INFO     | did not find any defunct processes belonging to 3593026
[2026-03-12 21:33:57] 2026-03-13 02:33:13,996 | INFO     | ready for new job
[2026-03-12 21:33:57] 2026-03-13 02:33:13,996 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 21:33:57] 2026-03-13 02:33:13,998 | INFO     | **************************************
[2026-03-12 21:33:57] 2026-03-13 02:33:13,998 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 21:33:57] 2026-03-13 02:33:13,998 | INFO     | **************************************
[2026-03-12 21:33:57] 2026-03-13 02:33:13,998 | INFO     | 
[2026-03-12 21:33:57] 2026-03-13 02:33:13,999 | INFO     | architecture information:
[2026-03-12 21:33:57] 2026-03-13 02:33:14,000 | INFO     | executing command: cat /etc/os-release
[2026-03-12 21:33:57] 2026-03-13 02:33:14,013 | INFO     | cat /etc/os-release:
[2026-03-12 21:33:57] NAME="CentOS Linux"
[2026-03-12 21:33:57] VERSION="7 (Core)"
[2026-03-12 21:33:57] ID="centos"
[2026-03-12 21:33:57] ID_LIKE="rhel fedora"
[2026-03-12 21:33:57] VERSION_ID="7"
[2026-03-12 21:33:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 21:33:57] ANSI_COLOR="0;31"
[2026-03-12 21:33:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 21:33:57] HOME_URL="https://www.centos.org/"
[2026-03-12 21:33:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 21:33:57] 
[2026-03-12 21:33:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 21:33:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 21:33:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 21:33:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 21:33:57] 
[2026-03-12 21:33:57] 2026-03-13 02:33:14,014 | INFO     | **************************************
[2026-03-12 21:33:57] 2026-03-13 02:33:14,516 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2026-03-12 21:33:57] 2026-03-13 02:33:14,531 | INFO     | sufficient remaining disk space (1804833128448 B)
[2026-03-12 21:33:57] 2026-03-13 02:33:14,531 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 21:33:57] 2026-03-13 02:33:14,531 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 21:33:57] 2026-03-13 02:33:14,531 | INFO     | update_server=False
[2026-03-12 21:33:57] 2026-03-13 02:33:14,531 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 21:33:57] 2026-03-13 02:33:14,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 21:33:57] 2026-03-13 02:33:14,700 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 21:33:57] 2026-03-13 02:33:14,785 | WARNING  | process 3593026 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 21:33:57] 2026-03-13 02:33:14,906 | INFO     | using path: /var/lib/boinc-client/slots/7/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 21:33:57] 2026-03-13 02:33:15,073 | INFO     | number of running child processes to parent process 3593026: 1
[2026-03-12 21:33:57] 2026-03-13 02:33:15,073 | INFO     | maximum number of monitored processes: 6
[2026-03-12 21:33:57] 2026-03-13 02:33:15,073 | INFO     | aborting job monitoring since job object (job id=7037673102) has expired
[2026-03-12 21:33:57] 2026-03-13 02:33:15,073 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 21:33:57] 2026-03-13 02:33:15,073 | INFO     | will abort loop
[2026-03-12 21:33:57] 2026-03-13 02:33:15,338 | INFO     | all payload control threads have been joined
[2026-03-12 21:33:57] 2026-03-13 02:33:15,368 | INFO     | all job control threads have been joined
[2026-03-12 21:33:57] 2026-03-13 02:33:15,430 | INFO     | all data control threads have been joined
[2026-03-12 21:33:57] 2026-03-13 02:33:15,536 | INFO     | [job] retrieve thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:15,537 | INFO     | [job] queue monitor thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:15,566 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:15,641 | INFO     | [payload] failed_post thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:16,081 | INFO     | [job] job monitor thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:16,292 | INFO     | [job] validate thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:16,343 | INFO     | [payload] control thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:16,372 | INFO     | [job] control thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:16,435 | INFO     | [data] control thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:16,439 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:16,512 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:16,705 | INFO     | [data] copytool_out thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:16,708 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:16,942 | INFO     | [data] copytool_in thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:17,009 | INFO     | [payload] validate_post thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:17,511 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 21:33:57] 2026-03-13 02:33:21,517 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 21:33:57] 2026-03-13 02:33:34,353 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-03-12 21:33:57] 2026-03-13 02:33:44,326 | INFO     | PID=3588296 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 21:33:57] 2026-03-13 02:33:44,326 | INFO     | .. there are 8 such processes running
[2026-03-12 21:33:57] 2026-03-13 02:33:44,326 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 21:33:57] 2026-03-13 02:33:44,326 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 21:33:57] 2026-03-13 02:33:44,326 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 21:33:57] 2026-03-13 02:33:51,284 | INFO     | [monitor] cgroup control has ended
[2026-03-12 21:33:57] 2026-03-13 02:33:52,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131318345574208)>', '<ExcThread(monitor, started 131317870089984)>']
[2026-03-12 21:33:57] 2026-03-13 02:33:53,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 21:33:57] 2026-03-13 02:33:53,368 | INFO     | [monitor] control thread has ended
[2026-03-12 21:33:57] 2026-03-13 02:33:57,417 | INFO     | all workflow threads have been joined
[2026-03-12 21:33:57] 2026-03-13 02:33:57,417 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 21:33:57] 2026-03-13 02:33:57,418 | INFO     | traces error code: 0
[2026-03-12 21:33:57] 2026-03-13 02:33:57,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 21:33:57] 2026-03-13 02:33:57,495 [wrapper] ==== pilot stdout END ====
[2026-03-12 21:33:57] 2026-03-13 02:33:57,497 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 21:33:57] 2026-03-13 02:33:57,500 [wrapper] pilotpid: 3588296
[2026-03-12 21:33:57] 2026-03-13 02:33:57,502 [wrapper] Pilot exit status: 0
[2026-03-12 21:33:57] 2026-03-13 02:33:57,512 [wrapper] pandaids: 7037673102
[2026-03-12 21:33:57] 2026-03-13 02:33:57,553 [wrapper] cleanup supervisor_pilot 3722071 3588297
[2026-03-12 21:33:57] 2026-03-13 02:33:57,556 [wrapper] Test setup, not cleaning
[2026-03-12 21:33:57] 2026-03-13 02:33:57,558 [wrapper] apfmon messages muted
[2026-03-12 21:33:57] 2026-03-13 02:33:57,560 [wrapper] ==== wrapper stdout END ====
[2026-03-12 21:33:57] 2026-03-13 02:33:57,563 [wrapper] ==== wrapper stderr END ====
[2026-03-12 21:33:57]  *** Error codes and diagnostics ***
[2026-03-12 21:33:57]     "exeErrorCode": 0,
[2026-03-12 21:33:57]     "exeErrorDiag": "",
[2026-03-12 21:33:57]     "pilotErrorCode": 0,
[2026-03-12 21:33:57]     "pilotErrorDiag": "",
[2026-03-12 21:33:57]  *** Listing of results directory ***
[2026-03-12 21:33:57] total 346140
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc    584627 Mar  4 02:44 pilot3.tar.gz
[2026-03-12 21:33:57] -rwx------ 1 boinc boinc     36322 Mar  4 02:47 runpilot2-wrapper.sh
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc      5111 Mar  4 02:49 queuedata.json
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc       100 Mar 12 19:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 21:33:57] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 19:48 run_atlas
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc       105 Mar 12 19:48 job.xml
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc      9665 Mar 12 19:48 init_data.xml
[2026-03-12 21:33:57] -rw-r--r-- 2 boinc boinc 193140556 Mar 12 19:48 EVNT.48700872._000075.pool.root.1
[2026-03-12 21:33:57] -rw-r--r-- 2 boinc boinc     15845 Mar 12 19:48 start_atlas.sh
[2026-03-12 21:33:57] drwxrwx--x 2 boinc boinc      4096 Mar 12 19:48 shared
[2026-03-12 21:33:57] -rw-r--r-- 2 boinc boinc    597956 Mar 12 19:48 input.tar.gz
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc         0 Mar 12 19:48 boinc_lockfile
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc      2550 Mar 12 19:48 pandaJob.out
[2026-03-12 21:33:57] -rw------- 1 boinc boinc   1006522 Mar 12 19:48 agis_schedconf.cvmfs.json
[2026-03-12 21:33:57] -rw------- 1 boinc boinc   1511578 Mar 12 19:48 agis_ddmendpoints.agis.ALL.json
[2026-03-12 21:33:57] -rw------- 1 boinc boinc       428 Mar 12 19:48 workernode_map.json
[2026-03-12 21:33:57] drwx------ 5 boinc boinc      4096 Mar 12 19:48 pilot3
[2026-03-12 21:33:57] -rw------- 1 boinc boinc 154919201 Mar 12 21:32 HITS.48700874._001938.pool.root.1
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc       529 Mar 12 21:32 boinc_task_state.xml
[2026-03-12 21:33:57] -rw------- 1 boinc boinc      1026 Mar 12 21:33 memory_monitor_summary.json
[2026-03-12 21:33:57] -rw------- 1 boinc boinc    301117 Mar 12 21:33 log.48700874._001938.job.log.tgz.1
[2026-03-12 21:33:57] -rw------- 1 boinc boinc        95 Mar 12 21:33 pilot_heartbeat.json
[2026-03-12 21:33:57] -rw------- 1 boinc boinc      6308 Mar 12 21:33 heartbeat.json
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc        27 Mar 12 21:33 wrapper_checkpoint.txt
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc      8192 Mar 12 21:33 boinc_mmap_file
[2026-03-12 21:33:57] -rw------- 1 boinc boinc      5356 Mar 12 21:33 pilotlog.txt
[2026-03-12 21:33:57] -rw------- 1 boinc boinc    920103 Mar 12 21:33 log.48700874._001938.job.log.1
[2026-03-12 21:33:57] -rw------- 1 boinc boinc       357 Mar 12 21:33 output.list
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc       620 Mar 12 21:33 runtime_log
[2026-03-12 21:33:57] -rw------- 1 boinc boinc   1239040 Mar 12 21:33 result.tar.gz
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc      8932 Mar 12 21:33 runtime_log.err
[2026-03-12 21:33:57] -rw------- 1 boinc boinc       652 Mar 12 21:33 rb3MDmf4wH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmEsJLDmIiXywm.diag
[2026-03-12 21:33:57] -rw-r--r-- 1 boinc boinc     20759 Mar 12 21:33 stderr.txt
[2026-03-12 21:33:57] HITS file was successfully produced:
[2026-03-12 21:33:57] -rw------- 1 boinc boinc 154919201 Mar 12 21:32 shared/HITS.pool.root.1
[2026-03-12 21:33:57]  *** Contents of shared directory: ***
[2026-03-12 21:33:57] total 341728
[2026-03-12 21:33:57] -rw-r--r-- 2 boinc boinc 193140556 Mar 12 19:48 ATLAS.root_0
[2026-03-12 21:33:57] -rw-r--r-- 2 boinc boinc     15845 Mar 12 19:48 start_atlas.sh
[2026-03-12 21:33:57] -rw-r--r-- 2 boinc boinc    597956 Mar 12 19:48 input.tar.gz
[2026-03-12 21:33:57] -rw------- 1 boinc boinc 154919201 Mar 12 21:32 HITS.pool.root.1
[2026-03-12 21:33:57] -rw------- 1 boinc boinc   1239040 Mar 12 21:33 result.tar.gz
21:33:59 (3584012): run_atlas exited; CPU time 23897.559155
21:33:59 (3584012): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN