Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
14:14:25 (77017): wrapper (7.7.26015): starting
14:14:25 (77017): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 14:14:25] Arguments: --nthreads 4
[2026-03-14 14:14:25] Threads: 4
[2026-03-14 14:14:25] Checking for CVMFS
[2026-03-14 14:14:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 14:14:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 14:14:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 14:14:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 14:14:26] 2.13.3.0 11582 38249 47120 157278 3 9 18206227 33554433 0 130560 0 19494048 99.987 1400442 318 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-03-14 14:14:26] CVMFS is ok
[2026-03-14 14:14:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 14:14:26] Checking for apptainer binary...
[2026-03-14 14:14:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 14:14:26] Running /usr/bin/apptainer --version
[2026-03-14 14:14:26] apptainer version 1.4.5
[2026-03-14 14:14:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 14:14:26] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-03-14 14:14:26] apptainer works
[2026-03-14 14:14:26] Set ATHENA_PROC_NUMBER=4
[2026-03-14 14:14:26] Set ATHENA_CORE_NUMBER=4
[2026-03-14 14:14:26] Starting ATLAS job with PandaID=7038281163
[2026-03-14 14:14:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 16:19:46]  *** The last 200 lines of the pilot log: ***
[2026-03-14 16:19:46] 2026-03-14 14:18:46,940 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 16:19:46] 2026-03-14 14:18:47,446 | INFO     | time since job start (7454s) is within the limit (349056.0s)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,382 | INFO     | job 7038281163 has state=finished
[2026-03-14 16:19:46] 2026-03-14 14:18:48,382 | INFO     | preparing for final server update for job 7038281163 in state='finished'
[2026-03-14 16:19:46] 2026-03-14 14:18:48,382 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7038281163/jobReport.json
[2026-03-14 16:19:46] 2026-03-14 14:18:48,383 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-03-14 16:19:46] 2026-03-14 14:18:48,383 | INFO     | this job has now completed (state=finished)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,383 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,383 | INFO     | log transfer has been attempted: DONE
[2026-03-14 16:19:46] 2026-03-14 14:18:48,384 | INFO     | job 7038281163 has finished - writing final server update
[2026-03-14 16:19:46] 2026-03-14 14:18:48,384 | INFO     | total number of processed events: 400 (read)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,385 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7038281163/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,385 | INFO     | extracted standard info from prmon json
[2026-03-14 16:19:46] 2026-03-14 14:18:48,386 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 16:19:46] 2026-03-14 14:18:48,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 16:19:46] 2026-03-14 14:18:48,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 16:19:46] 2026-03-14 14:18:48,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 16:19:46] 2026-03-14 14:18:48,386 | INFO     | fitting pss+swap vs Time
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | sum of square deviations: 563026370.5
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | sum of deviations: -29091521224.0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | mean x: 1773494179.5
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | mean y: 2577864.950819672
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | intersect: 91638860403.09656
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | chi2: 1.4775737391337949
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | sum of square deviations: 496597218.0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | sum of deviations: -26068300956.0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | mean x: 1773494027.0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | mean y: 2584801.982905983
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | intersect: 93100118102.10782
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | chi2: 1.4751542249311007
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | current chi2=1.4751542249311007 (change=0.16374913404406838 %)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | right removable region: 116
[2026-03-14 16:19:46] 2026-03-14 14:18:48,387 | INFO     | sum of square deviations: 496597218.0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | sum of deviations: -41474413742.0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | mean x: 1773494332.0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | mean y: 2605378.136752137
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | intersect: 148119902512.2095
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | chi2: 0.2048527890506942
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | current chi2=0.2048527890506942 (change=86.13586695370033 %)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | sum of square deviations: 435610028.0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | sum of deviations: -38305445960.50001
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | mean x: 1773494484.5
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | mean y: 2597432.2589285714
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | intersect: 155955153091.1924
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | chi2: 0.19649291513170836
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | current chi2=0.19649291513170836 (change=4.080917793565925 %)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | left removable region: 20
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | sum of square deviations: 274312120.0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | sum of deviations: -27907792861.0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | mean x: 1773494606.5
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | mean y: 2586032.875
[2026-03-14 16:19:46] 2026-03-14 14:18:48,388 | INFO     | intersect: 180433257919.71216
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | chi2: 0.1756952135209047
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | current memory leak: -101.74 B/s (using 96 data points, chi2=0.18)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | could have reported an average CPU frequency of 3166 MHz (8 samples)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | ..............................
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | . Timing measurements:
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | . get job = 0 s
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | . initial setup = 3 s
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | . payload setup = 2 s
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | . stage-in = 0 s
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | . payload execution = 7433 s
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | . stage-out = 0 s
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | . log creation = 0 s
[2026-03-14 16:19:46] 2026-03-14 14:18:48,389 | INFO     | ..............................
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | 
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | job summary report
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | --------------------------------------------------
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | PanDA job id: 7038281163
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | task id: 48845306
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | errors: (none)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | pilot state: finished 
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | transexitcode: 0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | exeerrorcode: 0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | exeerrordiag: 
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | exitcode: 0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | exitmsg: OK
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | cpuconsumptiontime: 28776 s
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | nevents: 400
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | neventsw: 0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | pid: 85675
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | pgrp: 85675
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | corecount: 4
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | event service: False
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | sizes: {0: 2280306, 11: 2280306, 7439: 2308017, 7440: 2317015, 7443: 2317071, 7444: 2317265}
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | --------------------------------------------------
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | 
[2026-03-14 16:19:46] 2026-03-14 14:18:48,415 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-03-14 16:19:46] 2026-03-14 14:18:48,423 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | job 7038281163 has completed (purged errors)
[2026-03-14 16:19:46] 2026-03-14 14:18:48,424 | INFO     | overall cleanup function is called
[2026-03-14 16:19:46] 2026-03-14 14:18:49,431 | INFO     | --- collectZombieJob: --- 10, [85675]
[2026-03-14 16:19:46] 2026-03-14 14:18:49,431 | INFO     | zombie collector waiting for pid 85675
[2026-03-14 16:19:46] 2026-03-14 14:18:49,431 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 16:19:46] 2026-03-14 14:18:49,431 | INFO     | collected zombie processes
[2026-03-14 16:19:46] 2026-03-14 14:18:49,431 | INFO     | will attempt to kill all subprocesses of pid=85675
[2026-03-14 16:19:46] 2026-03-14 14:18:49,525 | INFO     | process IDs to be killed: [85675] (in reverse order)
[2026-03-14 16:19:46] 2026-03-14 14:18:49,555 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 16:19:46] 2026-03-14 14:18:49,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 16:19:46] 2026-03-14 14:18:49,558 | INFO     | did not find any defunct processes belonging to 85675
[2026-03-14 16:19:46] 2026-03-14 14:18:49,560 | INFO     | did not find any defunct processes belonging to 85675
[2026-03-14 16:19:46] 2026-03-14 14:18:49,560 | INFO     | ready for new job
[2026-03-14 16:19:46] 2026-03-14 14:18:49,560 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 16:19:46] 2026-03-14 14:18:49,561 | INFO     | **************************************
[2026-03-14 16:19:46] 2026-03-14 14:18:49,561 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-14 16:19:46] 2026-03-14 14:18:49,561 | INFO     | **************************************
[2026-03-14 16:19:46] 2026-03-14 14:18:49,561 | INFO     | 
[2026-03-14 16:19:46] 2026-03-14 14:18:49,561 | INFO     | architecture information:
[2026-03-14 16:19:46] 2026-03-14 14:18:49,561 | INFO     | executing command: cat /etc/os-release
[2026-03-14 16:19:46] 2026-03-14 14:18:49,567 | INFO     | cat /etc/os-release:
[2026-03-14 16:19:46] NAME="CentOS Linux"
[2026-03-14 16:19:46] VERSION="7 (Core)"
[2026-03-14 16:19:46] ID="centos"
[2026-03-14 16:19:46] ID_LIKE="rhel fedora"
[2026-03-14 16:19:46] VERSION_ID="7"
[2026-03-14 16:19:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 16:19:46] ANSI_COLOR="0;31"
[2026-03-14 16:19:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 16:19:46] HOME_URL="https://www.centos.org/"
[2026-03-14 16:19:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 16:19:46] 
[2026-03-14 16:19:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 16:19:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 16:19:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 16:19:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 16:19:46] 
[2026-03-14 16:19:46] 2026-03-14 14:18:49,567 | INFO     | **************************************
[2026-03-14 16:19:46] 2026-03-14 14:18:50,070 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-03-14 16:19:46] 2026-03-14 14:18:50,077 | INFO     | sufficient remaining disk space (57259589632 B)
[2026-03-14 16:19:46] 2026-03-14 14:18:50,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 16:19:46] 2026-03-14 14:18:50,077 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 16:19:46] 2026-03-14 14:18:50,077 | INFO     | update_server=False
[2026-03-14 16:19:46] 2026-03-14 14:18:50,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 16:19:46] 2026-03-14 14:18:50,077 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 16:19:46] 2026-03-14 14:18:50,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 16:19:46] 2026-03-14 14:18:50,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 16:19:46] 2026-03-14 14:18:50,082 | INFO     | aborting loop
[2026-03-14 16:19:46] 2026-03-14 14:18:50,207 | INFO     | all payload control threads have been joined
[2026-03-14 16:19:46] 2026-03-14 14:18:50,909 | INFO     | all data control threads have been joined
[2026-03-14 16:19:46] 2026-03-14 14:18:51,083 | INFO     | [job] retrieve thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:51,083 | INFO     | [job] queue monitor thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:51,087 | INFO     | [job] job monitor thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:51,212 | INFO     | [payload] control thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:51,419 | INFO     | [payload] failed_post thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:51,659 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:51,688 | INFO     | [job] validate thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:51,753 | INFO     | all job control threads have been joined
[2026-03-14 16:19:46] 2026-03-14 14:18:51,767 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:51,776 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:51,913 | INFO     | [data] copytool_in thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:51,914 | INFO     | [data] control thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:52,083 | INFO     | [data] copytool_out thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:52,185 | INFO     | [payload] validate_post thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:52,758 | INFO     | [job] control thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:18:52,971 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 16:19:46] 2026-03-14 14:18:56,977 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:19:01,001 | INFO     | job.realtimelogging is not enabled
[2026-03-14 16:19:46] 2026-03-14 14:19:02,006 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 16:19:46] 2026-03-14 14:19:20,612 | INFO     | PID=80827 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 16:19:46] 2026-03-14 14:19:20,612 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 16:19:46] 2026-03-14 14:19:20,612 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 16:19:46] 2026-03-14 14:19:20,612 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 16:19:46] 2026-03-14 14:19:40,872 | INFO     | [monitor] cgroup control has ended
[2026-03-14 16:19:46] 2026-03-14 14:19:41,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140534763804480)>', '<ExcThread(monitor, started 140533536122624)>']
[2026-03-14 16:19:46] 2026-03-14 14:19:41,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 16:19:46] 2026-03-14 14:19:41,702 | INFO     | [monitor] control thread has ended
[2026-03-14 16:19:46] 2026-03-14 14:19:46,635 | INFO     | all workflow threads have been joined
[2026-03-14 16:19:46] 2026-03-14 14:19:46,635 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 16:19:46] 2026-03-14 14:19:46,635 | INFO     | traces error code: 0
[2026-03-14 16:19:46] 2026-03-14 14:19:46,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 16:19:46] 2026-03-14 14:19:46,675 [wrapper] ==== pilot stdout END ====
[2026-03-14 16:19:46] 2026-03-14 14:19:46,676 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 16:19:46] 2026-03-14 14:19:46,678 [wrapper] pilotpid: 80827
[2026-03-14 16:19:46] 2026-03-14 14:19:46,679 [wrapper] Pilot exit status: 0
[2026-03-14 16:19:46] 2026-03-14 14:19:46,684 [wrapper] pandaids: 7038281163
[2026-03-14 16:19:46] 2026-03-14 14:19:46,706 [wrapper] cleanup supervisor_pilot  170028 80828
[2026-03-14 16:19:46] 2026-03-14 14:19:46,708 [wrapper] Test setup, not cleaning
[2026-03-14 16:19:46] 2026-03-14 14:19:46,709 [wrapper] apfmon messages muted
[2026-03-14 16:19:46] 2026-03-14 14:19:46,711 [wrapper] ==== wrapper stdout END ====
[2026-03-14 16:19:46] 2026-03-14 14:19:46,712 [wrapper] ==== wrapper stderr END ====
[2026-03-14 16:19:46]  *** Error codes and diagnostics ***
[2026-03-14 16:19:46]     "exeErrorCode": 0,
[2026-03-14 16:19:46]     "exeErrorDiag": "",
[2026-03-14 16:19:46]     "pilotErrorCode": 0,
[2026-03-14 16:19:46]     "pilotErrorDiag": "",
[2026-03-14 16:19:46]  *** Listing of results directory ***
[2026-03-14 16:19:46] total 590092
[2026-03-14 16:19:46] -rw-r--r-- 1 ek ek    584627 Mar  4 10:44 pilot3.tar.gz
[2026-03-14 16:19:46] -rw-r--r-- 1 ek ek      5111 Mar  4 10:45 queuedata.json
[2026-03-14 16:19:46] -rwx------ 1 ek ek     36322 Mar  4 10:46 runpilot2-wrapper.sh
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek       100 Mar 14 14:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 16:19:46] -rwxr-xr-x 1 ek ek      7986 Mar 14 14:14 run_atlas
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek       105 Mar 14 14:14 job.xml
[2026-03-14 16:19:46] -rw-r--r-- 2 ek ek 298965383 Mar 14 14:14 EVNT.48449863._000001.pool.root.1
[2026-03-14 16:19:46] drwxrwx--x 2 ek ek      4096 Mar 14 14:14 shared
[2026-03-14 16:19:46] -rw-r--r-- 2 ek ek    597990 Mar 14 14:14 input.tar.gz
[2026-03-14 16:19:46] -rw-r--r-- 2 ek ek     15845 Mar 14 14:14 start_atlas.sh
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek         0 Mar 14 14:14 boinc_setup_complete
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek      9840 Mar 14 14:14 init_data.xml
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek         0 Mar 14 14:14 boinc_lockfile
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek      2672 Mar 14 14:14 pandaJob.out
[2026-03-14 16:19:46] -rw------- 1 ek ek        50 Mar 14 14:14 setup.sh.local
[2026-03-14 16:19:46] -rw------- 1 ek ek   1004579 Mar 14 14:14 agis_schedconf.cvmfs.json
[2026-03-14 16:19:46] -rw------- 1 ek ek   1511579 Mar 14 14:14 agis_ddmendpoints.agis.ALL.json
[2026-03-14 16:19:46] -rw------- 1 ek ek       433 Mar 14 14:14 workernode_map.json
[2026-03-14 16:19:46] drwx------ 5 ek ek      4096 Mar 14 14:14 pilot3
[2026-03-14 16:19:46] -rw------- 1 ek ek 298616063 Mar 14 16:18 HITS.48845306._000079.pool.root.1
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek       529 Mar 14 16:18 boinc_task_state.xml
[2026-03-14 16:19:46] -rw------- 1 ek ek      1029 Mar 14 16:18 memory_monitor_summary.json
[2026-03-14 16:19:46] -rw------- 1 ek ek        95 Mar 14 16:18 pilot_heartbeat.json
[2026-03-14 16:19:46] -rw------- 1 ek ek    301267 Mar 14 16:18 log.48845306._000079.job.log.tgz.1
[2026-03-14 16:19:46] -rw------- 1 ek ek      6329 Mar 14 16:18 heartbeat.json
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek        27 Mar 14 16:19 wrapper_checkpoint.txt
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek      8192 Mar 14 16:19 boinc_mmap_file
[2026-03-14 16:19:46] -rw------- 1 ek ek      4814 Mar 14 16:19 pilotlog.txt
[2026-03-14 16:19:46] -rw------- 1 ek ek   1059880 Mar 14 16:19 log.48845306._000079.job.log.1
[2026-03-14 16:19:46] -rw------- 1 ek ek       357 Mar 14 16:19 output.list
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek       620 Mar 14 16:19 runtime_log
[2026-03-14 16:19:46] -rw------- 1 ek ek   1382400 Mar 14 16:19 result.tar.gz
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek      9501 Mar 14 16:19 runtime_log.err
[2026-03-14 16:19:46] -rw------- 1 ek ek       667 Mar 14 16:19 hAnKDm12wH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmbtHLDmlnvDtm.diag
[2026-03-14 16:19:46] -rw-rw-r-- 1 ek ek     21044 Mar 14 16:19 stderr.txt
[2026-03-14 16:19:46] HITS file was successfully produced:
[2026-03-14 16:19:46] -rw------- 1 ek ek 298616063 Mar 14 16:18 shared/HITS.pool.root.1
[2026-03-14 16:19:46]  *** Contents of shared directory: ***
[2026-03-14 16:19:46] total 585540
[2026-03-14 16:19:46] -rw-r--r-- 2 ek ek 298965383 Mar 14 14:14 ATLAS.root_0
[2026-03-14 16:19:46] -rw-r--r-- 2 ek ek    597990 Mar 14 14:14 input.tar.gz
[2026-03-14 16:19:46] -rw-r--r-- 2 ek ek     15845 Mar 14 14:14 start_atlas.sh
[2026-03-14 16:19:46] -rw------- 1 ek ek 298616063 Mar 14 16:18 HITS.pool.root.1
[2026-03-14 16:19:46] -rw------- 1 ek ek   1382400 Mar 14 16:19 result.tar.gz
16:19:48 (77017): run_atlas exited; CPU time 28848.458268
16:19:48 (77017): called boinc_finish(0)

</stderr_txt>
]]>

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