Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:12:55 (2893111): wrapper (7.7.26015): starting
00:12:55 (2893111): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 00:12:55] Arguments: --nthreads 3
[2026-03-13 00:12:55] Threads: 3
[2026-03-13 00:12:55] Checking for CVMFS
[2026-03-13 00:12:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 00:12:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 00:12:56] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 00:12:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 00:12:56] 2.9.2.0 45133 21941 73448 157219 0 49 26854708 36864000 0 130560 0 7994074 99.981 827351 13924 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 00:12:56] CVMFS is ok
[2026-03-13 00:12:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 00:12:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 00:12:56] Further information can be found at the LHC@home message board.
[2026-03-13 00:12:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 00:12:56] Checking for apptainer binary...
[2026-03-13 00:12:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 00:12:56] Running /usr/bin/apptainer --version
[2026-03-13 00:12:56] apptainer version 1.4.1-1.1
[2026-03-13 00:12:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 00:12:57] cosA133
[2026-03-13 00:12:57] apptainer works
[2026-03-13 00:12:57] Set ATHENA_PROC_NUMBER=3
[2026-03-13 00:12:57] Set ATHENA_CORE_NUMBER=3
[2026-03-13 00:12:57] Starting ATLAS job with PandaID=7037673107
[2026-03-13 00:12:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 01:28:26]  *** The last 200 lines of the pilot log: ***
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 01:28:26] 2026-03-13 00:27:54,728 | INFO     | job 7037673107 has completed (purged errors)
[2026-03-13 01:28:26] 2026-03-13 00:27:54,729 | INFO     | overall cleanup function is called
[2026-03-13 01:28:26] 2026-03-13 00:27:55,735 | INFO     | --- collectZombieJob: --- 10, [2901598]
[2026-03-13 01:28:26] 2026-03-13 00:27:55,735 | INFO     | zombie collector waiting for pid 2901598
[2026-03-13 01:28:26] 2026-03-13 00:27:55,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 01:28:26] 2026-03-13 00:27:55,736 | INFO     | collected zombie processes
[2026-03-13 01:28:26] 2026-03-13 00:27:55,736 | INFO     | will attempt to kill all subprocesses of pid=2901598
[2026-03-13 01:28:26] 2026-03-13 00:27:55,775 | INFO     | process IDs to be killed: [2901598] (in reverse order)
[2026-03-13 01:28:26] 2026-03-13 00:27:55,802 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 01:28:26] 2026-03-13 00:27:55,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 01:28:26] 2026-03-13 00:27:55,803 | INFO     | did not find any defunct processes belonging to 2901598
[2026-03-13 01:28:26] 2026-03-13 00:27:55,804 | INFO     | did not find any defunct processes belonging to 2901598
[2026-03-13 01:28:26] 2026-03-13 00:27:55,804 | INFO     | ready for new job
[2026-03-13 01:28:26] 2026-03-13 00:27:55,804 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 01:28:26] 2026-03-13 00:27:55,804 | INFO     | **************************************
[2026-03-13 01:28:26] 2026-03-13 00:27:55,805 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 01:28:26] 2026-03-13 00:27:55,805 | INFO     | **************************************
[2026-03-13 01:28:26] 2026-03-13 00:27:55,805 | INFO     | 
[2026-03-13 01:28:26] 2026-03-13 00:27:55,805 | INFO     | architecture information:
[2026-03-13 01:28:26] 2026-03-13 00:27:55,805 | INFO     | executing command: cat /etc/os-release
[2026-03-13 01:28:26] 2026-03-13 00:27:55,815 | INFO     | cat /etc/os-release:
[2026-03-13 01:28:26] NAME="CentOS Linux"
[2026-03-13 01:28:26] VERSION="7 (Core)"
[2026-03-13 01:28:26] ID="centos"
[2026-03-13 01:28:26] ID_LIKE="rhel fedora"
[2026-03-13 01:28:26] VERSION_ID="7"
[2026-03-13 01:28:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 01:28:26] ANSI_COLOR="0;31"
[2026-03-13 01:28:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 01:28:26] HOME_URL="https://www.centos.org/"
[2026-03-13 01:28:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 01:28:26] 
[2026-03-13 01:28:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 01:28:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 01:28:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 01:28:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 01:28:26] 
[2026-03-13 01:28:26] 2026-03-13 00:27:55,815 | INFO     | **************************************
[2026-03-13 01:28:26] 2026-03-13 00:27:56,319 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 01:28:26] 2026-03-13 00:27:56,333 | INFO     | sufficient remaining disk space (633627213824 B)
[2026-03-13 01:28:26] 2026-03-13 00:27:56,333 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 01:28:26] 2026-03-13 00:27:56,333 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 01:28:26] 2026-03-13 00:27:56,333 | INFO     | update_server=False
[2026-03-13 01:28:26] 2026-03-13 00:27:56,333 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 01:28:26] 2026-03-13 00:27:56,333 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 01:28:26] 2026-03-13 00:27:56,333 | INFO     | aborting loop
[2026-03-13 01:28:26] 2026-03-13 00:27:56,333 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 01:28:26] 2026-03-13 00:27:56,758 | INFO     | all payload control threads have been joined
[2026-03-13 01:28:26] 2026-03-13 00:27:56,875 | INFO     | all job control threads have been joined
[2026-03-13 01:28:26] 2026-03-13 00:27:57,081 | INFO     | all data control threads have been joined
[2026-03-13 01:28:26] 2026-03-13 00:27:57,339 | INFO     | [job] retrieve thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:57,339 | INFO     | [job] job monitor thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:57,340 | INFO     | [job] queue monitor thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:57,637 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 01:28:26] 2026-03-13 00:27:57,642 | INFO     | [payload] validate_post thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:57,764 | INFO     | [payload] control thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:57,882 | INFO     | [job] control thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:58,039 | INFO     | [payload] failed_post thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:58,066 | INFO     | [job] validate thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:58,087 | INFO     | [data] control thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:58,163 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:58,260 | INFO     | [data] copytool_in thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:58,262 | INFO     | job.realtimelogging is not enabled
[2026-03-13 01:28:26] 2026-03-13 00:27:58,330 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:58,817 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:58,904 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 01:28:26] 2026-03-13 00:27:59,268 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:27:59,644 | INFO     | [data] copytool_out thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:28:02,911 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 01:28:26] 2026-03-13 00:28:06,701 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-03-13 01:28:26] 2026-03-13 00:28:15,720 | INFO     | [monitor] cgroup control has ended
[2026-03-13 01:28:26] 2026-03-13 00:28:17,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180718933824)>', '<ExcThread(monitor, started 140179981448960)>']
[2026-03-13 01:28:26] 2026-03-13 00:28:22,144 | INFO     | all workflow threads have been joined
[2026-03-13 01:28:26] 2026-03-13 00:28:22,145 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 01:28:26] 2026-03-13 00:28:22,145 | INFO     | traces error code: 0
[2026-03-13 01:28:26] 2026-03-13 00:28:22,146 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 01:28:26] 2026-03-13 00:28:26,380 | INFO     | PID=2897167 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 01:28:26] 2026-03-13 00:28:26,380 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 01:28:26] 2026-03-13 00:28:26,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 01:28:26] 2026-03-13 00:28:26,380 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 01:28:26] 2026-03-13 00:28:26,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 01:28:26] 2026-03-13 00:28:26,381 | INFO     | [monitor] control thread has ended
[2026-03-13 01:28:26] 2026-03-13 00:28:26,425 [wrapper] ==== pilot stdout END ====
[2026-03-13 01:28:26] 2026-03-13 00:28:26,428 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 01:28:26] 2026-03-13 00:28:26,431 [wrapper] pilotpid: 2897167
[2026-03-13 01:28:26] 2026-03-13 00:28:26,434 [wrapper] Pilot exit status: 0
[2026-03-13 01:28:26] 2026-03-13 00:28:26,441 [wrapper] pandaids: 7037673107
[2026-03-13 01:28:26] 2026-03-13 00:28:26,457 [wrapper] cleanup supervisor_pilot 2907763 2897168
[2026-03-13 01:28:26] 2026-03-13 00:28:26,460 [wrapper] Test setup, not cleaning
[2026-03-13 01:28:26] 2026-03-13 00:28:26,463 [wrapper] apfmon messages muted
[2026-03-13 01:28:26] 2026-03-13 00:28:26,466 [wrapper] ==== wrapper stdout END ====
[2026-03-13 01:28:26] 2026-03-13 00:28:26,469 [wrapper] ==== wrapper stderr END ====
[2026-03-13 01:28:26]  *** Error codes and diagnostics ***
[2026-03-13 01:28:26]     "exeErrorCode": 0,
[2026-03-13 01:28:26]     "exeErrorDiag": "",
[2026-03-13 01:28:26]     "pilotErrorCode": 0,
[2026-03-13 01:28:26]     "pilotErrorDiag": "",
[2026-03-13 01:28:26]  *** Listing of results directory ***
[2026-03-13 01:28:26] total 338132
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc    584627 Mar  4 09:44 pilot3.tar.gz
[2026-03-13 01:28:26] -rwx------ 1 boinc boinc     36322 Mar  4 09:47 runpilot2-wrapper.sh
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc      5111 Mar  4 09:49 queuedata.json
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc       100 Mar 13 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 01:28:26] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 00:12 run_atlas
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc       105 Mar 13 00:12 job.xml
[2026-03-13 01:28:26] -rw-r--r-- 2 boinc boinc 188266764 Mar 13 00:12 EVNT.48700872._000076.pool.root.1
[2026-03-13 01:28:26] -rw-r--r-- 2 boinc boinc    597960 Mar 13 00:12 input.tar.gz
[2026-03-13 01:28:26] -rw-r--r-- 2 boinc boinc     15845 Mar 13 00:12 start_atlas.sh
[2026-03-13 01:28:26] drwxrwx--x 2 boinc boinc      4096 Mar 13 00:12 shared
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc         0 Mar 13 00:12 boinc_setup_complete
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc      6197 Mar 13 00:12 init_data.xml
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc         0 Mar 13 00:12 boinc_lockfile
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc      2550 Mar 13 00:12 pandaJob.out
[2026-03-13 01:28:26] -rw------- 1 boinc boinc   1006498 Mar 13 00:13 agis_schedconf.cvmfs.json
[2026-03-13 01:28:26] -rw------- 1 boinc boinc   1511578 Mar 13 00:13 agis_ddmendpoints.agis.ALL.json
[2026-03-13 01:28:26] -rw------- 1 boinc boinc       427 Mar 13 00:13 workernode_map.json
[2026-03-13 01:28:26] drwx------ 5 boinc boinc      4096 Mar 13 00:13 pilot3
[2026-03-13 01:28:26] -rw------- 1 boinc boinc        95 Mar 13 01:27 pilot_heartbeat.json
[2026-03-13 01:28:26] -rw------- 1 boinc boinc 152267631 Mar 13 01:27 HITS.48700874._001943.pool.root.1
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc       529 Mar 13 01:27 boinc_task_state.xml
[2026-03-13 01:28:26] -rw------- 1 boinc boinc      1020 Mar 13 01:27 memory_monitor_summary.json
[2026-03-13 01:28:26] -rw------- 1 boinc boinc    236361 Mar 13 01:27 log.48700874._001943.job.log.tgz.1
[2026-03-13 01:28:26] -rw------- 1 boinc boinc      6305 Mar 13 01:27 heartbeat.json
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc      8192 Mar 13 01:28 boinc_mmap_file
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc        27 Mar 13 01:28 wrapper_checkpoint.txt
[2026-03-13 01:28:26] -rw------- 1 boinc boinc       747 Mar 13 01:28 pilotlog.txt
[2026-03-13 01:28:26] -rw------- 1 boinc boinc    661764 Mar 13 01:28 log.48700874._001943.job.log.1
[2026-03-13 01:28:26] -rw------- 1 boinc boinc       357 Mar 13 01:28 output.list
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc       620 Mar 13 01:28 runtime_log
[2026-03-13 01:28:26] -rw------- 1 boinc boinc    911360 Mar 13 01:28 result.tar.gz
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc      8901 Mar 13 01:28 runtime_log.err
[2026-03-13 01:28:26] -rw------- 1 boinc boinc       658 Mar 13 01:28 RhCNDmf4wH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmIsJLDmiXnMXo.diag
[2026-03-13 01:28:26] -rw-r--r-- 1 boinc boinc     12930 Mar 13 01:28 stderr.txt
[2026-03-13 01:28:26] HITS file was successfully produced:
[2026-03-13 01:28:26] -rw------- 1 boinc boinc 152267631 Mar 13 01:27 shared/HITS.pool.root.1
[2026-03-13 01:28:26]  *** Contents of shared directory: ***
[2026-03-13 01:28:26] total 334052
[2026-03-13 01:28:26] -rw-r--r-- 2 boinc boinc 188266764 Mar 13 00:12 ATLAS.root_0
[2026-03-13 01:28:26] -rw-r--r-- 2 boinc boinc    597960 Mar 13 00:12 input.tar.gz
[2026-03-13 01:28:26] -rw-r--r-- 2 boinc boinc     15845 Mar 13 00:12 start_atlas.sh
[2026-03-13 01:28:26] -rw------- 1 boinc boinc 152267631 Mar 13 01:27 HITS.pool.root.1
[2026-03-13 01:28:26] -rw------- 1 boinc boinc    911360 Mar 13 01:28 result.tar.gz
01:28:27 (2893111): run_atlas exited; CPU time 12756.034678
01:28:27 (2893111): called boinc_finish(0)

</stderr_txt>
]]>

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