Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
15:50:11 (29823): wrapper (7.7.26015): starting
15:50:11 (29823): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 15:50:11] Arguments: --nthreads 8
[2026-03-12 15:50:11] Threads: 8
[2026-03-12 15:50:11] Checking for CVMFS
[2026-03-12 15:50:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 15:50:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 15:50:11] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 15:50:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 15:50:11] 2.11.0.0 4320 218311 72780 157203 3 188 2692632 4096001 917 130560 16 5756602 99.386 10391168 366 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-12 15:50:11] CVMFS is ok
[2026-03-12 15:50:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 15:50:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 15:50:11] Further information can be found at the LHC@home message board.
[2026-03-12 15:50:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 15:50:11] Checking for apptainer binary...
[2026-03-12 15:50:11] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-12 15:50:11] apptainer is not installed, using version from CVMFS
[2026-03-12 15:50:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 15:50:12] WARNING: Environment variable TMPDIR already has value [/tmp/job_11299979/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node351
[2026-03-12 15:50:12] apptainer works
[2026-03-12 15:50:12] Set ATHENA_PROC_NUMBER=8
[2026-03-12 15:50:12] Set ATHENA_CORE_NUMBER=8
[2026-03-12 15:50:12] Starting ATLAS job with PandaID=7037591502
[2026-03-12 15:50:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11299979/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 17:18:45]  *** The last 200 lines of the pilot log: ***
[2026-03-12 17:18:45]  is_altstaged=None
[2026-03-12 17:18:45]  is_tar=False
[2026-03-12 17:18:45]  lfn=log.48842570._000077.job.log.tgz.1
[2026-03-12 17:18:45]  mtime=0
[2026-03-12 17:18:45]  protocol_id=None
[2026-03-12 17:18:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 17:18:45]  replicas=None
[2026-03-12 17:18:45]  scope=mc23_13p6TeV
[2026-03-12 17:18:45]  status=None
[2026-03-12 17:18:45]  status_code=0
[2026-03-12 17:18:45]  storage_token=
[2026-03-12 17:18:45]  surl=/tmp/job_11299979/atlas/pilot/slots/0/PanDA_Pilot-7037591502/log.48842570._000077.job.log.tgz.1
[2026-03-12 17:18:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/14/log.48842570._000077.job.log.tgz.1
[2026-03-12 17:18:45]  workdir=None
[2026-03-12 17:18:45] ]
[2026-03-12 17:18:45] 2026-03-12 16:18:08,643 | INFO     | transferring file log.48842570._000077.job.log.tgz.1 from /tmp/job_11299979/atlas/pilot/slots/0/PanDA_Pilot-7037591502/log.48842570._000077.job.log.tgz.1 to /tmp/j
[2026-03-12 17:18:45] 2026-03-12 16:18:08,644 | INFO     | executing command: /usr/bin/env mv /tmp/job_11299979/atlas/pilot/slots/0/PanDA_Pilot-7037591502/log.48842570._000077.job.log.tgz.1 /tmp/job_11299979/atlas/pilot/sl
[2026-03-12 17:18:45] 2026-03-12 16:18:08,652 | INFO     | adding to output.list: log.48842570._000077.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/14/log.48842570._000077.job.log.tg
[2026-03-12 17:18:45] 2026-03-12 16:18:08,653 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 17:18:45] 2026-03-12 16:18:08,653 | INFO     | summary of transferred files:
[2026-03-12 17:18:45] 2026-03-12 16:18:08,653 | INFO     |  -- lfn=log.48842570._000077.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 17:18:45] 2026-03-12 16:18:08,653 | INFO     | stage-out finished correctly
[2026-03-12 17:18:45] 2026-03-12 16:18:09,264 | INFO     | PID=1284 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-12 17:18:45] 2026-03-12 16:18:09,264 | INFO     | .. there are 3 such processes running
[2026-03-12 17:18:45] 2026-03-12 16:18:10,254 | INFO     | monitor loop #398: job 0:7037591502 is in state 'finished'
[2026-03-12 17:18:45] 2026-03-12 16:18:10,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 17:18:45] 2026-03-12 16:18:10,264 | INFO     | time since job start (5272s) is within the limit (349056.0s)
[2026-03-12 17:18:45] 2026-03-12 16:18:11,978 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 17:18:45] 2026-03-12 16:18:12,270 | INFO     | time since job start (5274s) is within the limit (349056.0s)
[2026-03-12 17:18:45] 2026-03-12 16:18:12,757 | INFO     | monitor loop #399: job 0:7037591502 is in state 'finished'
[2026-03-12 17:18:45] 2026-03-12 16:18:12,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 17:18:45] 2026-03-12 16:18:13,918 | INFO     | job 7037591502 has state=finished
[2026-03-12 17:18:45] 2026-03-12 16:18:13,918 | INFO     | preparing for final server update for job 7037591502 in state='finished'
[2026-03-12 17:18:45] 2026-03-12 16:18:13,918 | INFO     | reading metadata from: /tmp/job_11299979/atlas/pilot/slots/0/PanDA_Pilot-7037591502/jobReport.json
[2026-03-12 17:18:45] 2026-03-12 16:18:13,919 | INFO     | added worker_node to metadata from /tmp/job_11299979/atlas/pilot/slots/0/workernode_map.json
[2026-03-12 17:18:45] 2026-03-12 16:18:13,920 | INFO     | this job has now completed (state=finished)
[2026-03-12 17:18:45] 2026-03-12 16:18:13,920 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 17:18:45] 2026-03-12 16:18:13,920 | INFO     | log transfer has been attempted: DONE
[2026-03-12 17:18:45] 2026-03-12 16:18:13,920 | INFO     | job 7037591502 has finished - writing final server update
[2026-03-12 17:18:45] 2026-03-12 16:18:13,920 | INFO     | total number of processed events: 400 (read)
[2026-03-12 17:18:45] 2026-03-12 16:18:13,937 | INFO     | using path: /tmp/job_11299979/atlas/pilot/slots/0/PanDA_Pilot-7037591502/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 17:18:45] 2026-03-12 16:18:13,937 | INFO     | extracted standard info from prmon json
[2026-03-12 17:18:45] 2026-03-12 16:18:13,937 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 17:18:45] 2026-03-12 16:18:13,937 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 17:18:45] 2026-03-12 16:18:13,937 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 17:18:45] 2026-03-12 16:18:13,937 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 17:18:45] 2026-03-12 16:18:13,938 | INFO     | fitting pss+swap vs Time
[2026-03-12 17:18:45] 2026-03-12 16:18:13,938 | INFO     | sum of square deviations: 158737860.0
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | sum of deviations: -2738206613.0
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | mean x: 1773329748.5
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | mean y: 2593822.325
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | intersect: 30592292110.8891
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | chi2: 0.016537115033249943
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | current memory leak: -17.25 B/s (using 80 data points, chi2=0.02)
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | could have reported an average CPU frequency of 2485 MHz (6 samples)
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | ..............................
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | . Timing measurements:
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | . get job = 0 s
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | . initial setup = 2 s
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | . payload setup = 2 s
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | . stage-in = 0 s
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | . payload execution = 5251 s
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | . stage-out = 0 s
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | . log creation = 0 s
[2026-03-12 17:18:45] 2026-03-12 16:18:13,939 | INFO     | ..............................
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | 
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | job summary report
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | --------------------------------------------------
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | PanDA job id: 7037591502
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | task id: 48842570
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | errors: (none)
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | pilot state: finished 
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | transexitcode: 0
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | exeerrorcode: 0
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | exeerrordiag: 
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | exitcode: 0
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | exitmsg: OK
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | cpuconsumptiontime: 36438 s
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | nevents: 400
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | neventsw: 0
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | pid: 6084
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | pgrp: 6084
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | corecount: 8
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | event service: False
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | sizes: {0: 2279869, 1: 2280441, 11: 2280441, 5258: 2307122, 5259: 2316150, 5263: 2316206, 5265: 2316528}
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | --------------------------------------------------
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | 
[2026-03-12 17:18:45] 2026-03-12 16:18:13,986 | INFO     | executing command: ls -lF /tmp/job_11299979/atlas/pilot/slots/0
[2026-03-12 17:18:45] 2026-03-12 16:18:13,996 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,996 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,996 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,996 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | job 7037591502 has completed (purged errors)
[2026-03-12 17:18:45] 2026-03-12 16:18:13,997 | INFO     | overall cleanup function is called
[2026-03-12 17:18:45] 2026-03-12 16:18:15,003 | INFO     | --- collectZombieJob: --- 10, [6084]
[2026-03-12 17:18:45] 2026-03-12 16:18:15,004 | INFO     | zombie collector waiting for pid 6084
[2026-03-12 17:18:45] 2026-03-12 16:18:15,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 17:18:45] 2026-03-12 16:18:15,004 | INFO     | collected zombie processes
[2026-03-12 17:18:45] 2026-03-12 16:18:15,004 | INFO     | will attempt to kill all subprocesses of pid=6084
[2026-03-12 17:18:45] 2026-03-12 16:18:15,102 | INFO     | process IDs to be killed: [6084] (in reverse order)
[2026-03-12 17:18:45] 2026-03-12 16:18:15,139 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 17:18:45] 2026-03-12 16:18:15,139 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 17:18:45] 2026-03-12 16:18:15,145 | INFO     | did not find any defunct processes belonging to 6084
[2026-03-12 17:18:45] 2026-03-12 16:18:15,148 | INFO     | did not find any defunct processes belonging to 6084
[2026-03-12 17:18:45] 2026-03-12 16:18:15,148 | INFO     | ready for new job
[2026-03-12 17:18:45] 2026-03-12 16:18:15,148 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 17:18:45] 2026-03-12 16:18:15,149 | INFO     | **************************************
[2026-03-12 17:18:45] 2026-03-12 16:18:15,149 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 17:18:45] 2026-03-12 16:18:15,149 | INFO     | **************************************
[2026-03-12 17:18:45] 2026-03-12 16:18:15,149 | INFO     | 
[2026-03-12 17:18:45] 2026-03-12 16:18:15,163 | INFO     | architecture information:
[2026-03-12 17:18:45] 2026-03-12 16:18:15,164 | INFO     | executing command: cat /etc/os-release
[2026-03-12 17:18:45] 2026-03-12 16:18:15,169 | INFO     | cat /etc/os-release:
[2026-03-12 17:18:45] NAME="CentOS Linux"
[2026-03-12 17:18:45] VERSION="7 (Core)"
[2026-03-12 17:18:45] ID="centos"
[2026-03-12 17:18:45] ID_LIKE="rhel fedora"
[2026-03-12 17:18:45] VERSION_ID="7"
[2026-03-12 17:18:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 17:18:45] ANSI_COLOR="0;31"
[2026-03-12 17:18:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 17:18:45] HOME_URL="https://www.centos.org/"
[2026-03-12 17:18:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 17:18:45] 
[2026-03-12 17:18:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 17:18:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 17:18:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 17:18:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 17:18:45] 
[2026-03-12 17:18:45] 2026-03-12 16:18:15,170 | INFO     | **************************************
[2026-03-12 17:18:45] 2026-03-12 16:18:15,672 | INFO     | executing command: df -mP /tmp/job_11299979/atlas/pilot/slots/0
[2026-03-12 17:18:45] 2026-03-12 16:18:15,680 | INFO     | sufficient remaining disk space (225226784768 B)
[2026-03-12 17:18:45] 2026-03-12 16:18:15,680 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 17:18:45] 2026-03-12 16:18:15,680 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 17:18:45] 2026-03-12 16:18:15,680 | INFO     | update_server=False
[2026-03-12 17:18:45] 2026-03-12 16:18:15,680 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 17:18:45] 2026-03-12 16:18:15,680 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 17:18:45] 2026-03-12 16:18:15,843 | INFO     | all data control threads have been joined
[2026-03-12 17:18:45] 2026-03-12 16:18:16,203 | INFO     | all payload control threads have been joined
[2026-03-12 17:18:45] 2026-03-12 16:18:16,245 | INFO     | all job control threads have been joined
[2026-03-12 17:18:45] 2026-03-12 16:18:16,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 17:18:45] 2026-03-12 16:18:16,265 | INFO     | aborting loop
[2026-03-12 17:18:45] 2026-03-12 16:18:16,685 | INFO     | [job] retrieve thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:16,686 | INFO     | [job] queue monitor thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:16,721 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 17:18:45] 2026-03-12 16:18:16,813 | INFO     | [payload] failed_post thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:16,846 | INFO     | [data] control thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:16,922 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:17,054 | INFO     | [data] copytool_in thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:17,208 | INFO     | [payload] control thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:17,250 | INFO     | [job] control thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:17,270 | INFO     | [job] job monitor thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:17,769 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:17,928 | INFO     | [payload] validate_post thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:17,988 | INFO     | [job] validate thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:18,033 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 17:18:45] 2026-03-12 16:18:18,035 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:18,127 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:18,727 | INFO     | [data] copytool_out thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:22,039 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 17:18:45] 2026-03-12 16:18:26,382 | INFO     | [monitor] cgroup control has ended
[2026-03-12 17:18:45] 2026-03-12 16:18:27,356 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-03-12 17:18:45] 2026-03-12 16:18:32,368 | INFO     | all workflow threads have been joined
[2026-03-12 17:18:45] 2026-03-12 16:18:32,368 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 17:18:45] 2026-03-12 16:18:32,368 | INFO     | traces error code: 0
[2026-03-12 17:18:45] 2026-03-12 16:18:32,368 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 17:18:45] 2026-03-12 16:18:45,458 | INFO     | PID=1284 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-12 17:18:45] 2026-03-12 16:18:45,458 | INFO     | .. there are 3 such processes running
[2026-03-12 17:18:45] 2026-03-12 16:18:45,458 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 17:18:45] 2026-03-12 16:18:45,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 17:18:45] 2026-03-12 16:18:45,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 17:18:45] 2026-03-12 16:18:45,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 17:18:45] 2026-03-12 16:18:45,459 | INFO     | [monitor] control thread has ended
[2026-03-12 17:18:45] 2026-03-12 16:18:45,511 [wrapper] ==== pilot stdout END ====
[2026-03-12 17:18:45] 2026-03-12 16:18:45,513 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 17:18:45] 2026-03-12 16:18:45,514 [wrapper] pilotpid: 1284
[2026-03-12 17:18:45] 2026-03-12 16:18:45,516 [wrapper] Pilot exit status: 0
[2026-03-12 17:18:45] 2026-03-12 16:18:45,521 [wrapper] pandaids: 7037591502
[2026-03-12 17:18:45] 2026-03-12 16:18:45,545 [wrapper] cleanup supervisor_pilot 32189 1285
[2026-03-12 17:18:45] 2026-03-12 16:18:45,546 [wrapper] Test setup, not cleaning
[2026-03-12 17:18:45] 2026-03-12 16:18:45,547 [wrapper] apfmon messages muted
[2026-03-12 17:18:45] 2026-03-12 16:18:45,549 [wrapper] ==== wrapper stdout END ====
[2026-03-12 17:18:45] 2026-03-12 16:18:45,550 [wrapper] ==== wrapper stderr END ====
[2026-03-12 17:18:45]  *** Error codes and diagnostics ***
[2026-03-12 17:18:45]     "exeErrorCode": 0,
[2026-03-12 17:18:45]     "exeErrorDiag": "",
[2026-03-12 17:18:45]     "pilotErrorCode": 0,
[2026-03-12 17:18:45]     "pilotErrorDiag": "",
[2026-03-12 17:18:45]  *** Listing of results directory ***
[2026-03-12 17:18:45] total 580944
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user    584627 Mar  4 08:36 pilot3.tar.gz
[2026-03-12 17:18:45] -rwx------ 1 mf493845 unix-user     36322 Mar  4 08:37 runpilot2-wrapper.sh
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user      5111 Mar  4 08:38 queuedata.json
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user       100 Mar 12 14:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 17:18:45] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 12 14:31 run_atlas
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user       105 Mar 12 14:31 job.xml
[2026-03-12 17:18:45] -rw-r--r-- 2 mf493845 unix-user 307759771 Mar 12 15:50 EVNT.48448649._000002.pool.root.1
[2026-03-12 17:18:45] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 12 15:50 start_atlas.sh
[2026-03-12 17:18:45] drwxrwx--x 2 mf493845 unix-user       100 Mar 12 15:50 shared
[2026-03-12 17:18:45] -rw-r--r-- 2 mf493845 unix-user    597961 Mar 12 15:50 input.tar.gz
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user      6389 Mar 12 15:50 init_data.xml
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user         0 Mar 12 15:50 boinc_setup_complete
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user      8192 Mar 12 15:50 boinc_mmap_file
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user         0 Mar 12 15:50 boinc_lockfile
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user      2600 Mar 12 15:50 pandaJob.out
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user   1006554 Mar 12 15:50 agis_schedconf.cvmfs.json
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user   1511578 Mar 12 15:50 agis_ddmendpoints.agis.ALL.json
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user       420 Mar 12 15:50 workernode_map.json
[2026-03-12 17:18:45] drwx------ 5 mf493845 unix-user       440 Mar 12 15:50 pilot3
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user 280982483 Mar 12 17:17 HITS.48842570._000077.pool.root.1
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user      1018 Mar 12 17:18 memory_monitor_summary.json
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user    331159 Mar 12 17:18 log.48842570._000077.job.log.tgz.1
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user        95 Mar 12 17:18 pilot_heartbeat.json
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user      6303 Mar 12 17:18 heartbeat.json
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user       819 Mar 12 17:18 pilotlog.txt
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user    790263 Mar 12 17:18 log.48842570._000077.job.log.1
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user       357 Mar 12 17:18 output.list
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user       620 Mar 12 17:18 runtime_log
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user   1136640 Mar 12 17:18 result.tar.gz
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user      9219 Mar 12 17:18 runtime_log.err
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user       644 Mar 12 17:18 902NDmpyvH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJhJLDmWiDdRo.diag
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user     22073 Mar 12 17:18 stderr.txt
[2026-03-12 17:18:45] HITS file was successfully produced:
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user 280982483 Mar 12 17:17 shared/HITS.pool.root.1
[2026-03-12 17:18:45]  *** Contents of shared directory: ***
[2026-03-12 17:18:45] total 576660
[2026-03-12 17:18:45] -rw-r--r-- 2 mf493845 unix-user 307759771 Mar 12 15:50 ATLAS.root_0
[2026-03-12 17:18:45] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 12 15:50 start_atlas.sh
[2026-03-12 17:18:45] -rw-r--r-- 2 mf493845 unix-user    597961 Mar 12 15:50 input.tar.gz
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user 280982483 Mar 12 17:17 HITS.pool.root.1
[2026-03-12 17:18:45] -rw------- 1 mf493845 unix-user   1136640 Mar 12 17:18 result.tar.gz
17:18:47 (29823): run_atlas exited; CPU time 36509.269075
17:18:47 (29823): called boinc_finish(0)

</stderr_txt>
]]>

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