Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:09:28 (85712): wrapper (7.7.26015): starting
19:09:28 (85712): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 19:09:28] Arguments: --nthreads 4
[2026-03-14 19:09:28] Threads: 4
[2026-03-14 19:09:28] Checking for CVMFS
[2026-03-14 19:09:28] No cvmfs_config command found, will try listing directly
[2026-03-14 19:09:28] CVMFS is ok
[2026-03-14 19:09:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 19:09:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 19:09:28] Further information can be found at the LHC@home message board.
[2026-03-14 19:09:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 19:09:28] Checking for apptainer binary...
[2026-03-14 19:09:28] which: no apptainer in ((null))
[2026-03-14 19:09:28] apptainer is not installed, using version from CVMFS
[2026-03-14 19:09:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 19:09:28] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/16/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-14 19:09:28] apptainer works
[2026-03-14 19:09:28] Set ATHENA_PROC_NUMBER=4
[2026-03-14 19:09:28] Set ATHENA_CORE_NUMBER=4
[2026-03-14 19:09:28] Starting ATLAS job with PandaID=7043152622
[2026-03-14 19:09:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 20:33:57]  *** The last 200 lines of the pilot log: ***
[2026-03-14 20:33:57]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-14 20:33:57]  is_altstaged=None
[2026-03-14 20:33:57]  is_tar=False
[2026-03-14 20:33:57]  lfn=log.48955006._044679.job.log.tgz.1
[2026-03-14 20:33:57]  mtime=0
[2026-03-14 20:33:57]  protocol_id=None
[2026-03-14 20:33:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-14 20:33:57]  replicas=None
[2026-03-14 20:33:57]  scope=mc23_13p6TeV
[2026-03-14 20:33:57]  status=None
[2026-03-14 20:33:57]  status_code=0
[2026-03-14 20:33:57]  storage_token=
[2026-03-14 20:33:57]  surl=/var/lib/boinc/var/slot60/slots/16/PanDA_Pilot-7043152622/log.48955006._044679.job.log.tgz.1
[2026-03-14 20:33:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/f8/log.48955006._044679.job.log.tgz.1
[2026-03-14 20:33:57]  workdir=None
[2026-03-14 20:33:57] ]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,518 | INFO     | transferring file log.48955006._044679.job.log.tgz.1 from /var/lib/boinc/var/slot60/slots/16/PanDA_Pilot-7043152622/log.48955006._044679.job.log.tgz.1 to /var/lib/
[2026-03-14 20:33:57] 2026-03-14 19:33:13,518 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot60/slots/16/PanDA_Pilot-7043152622/log.48955006._044679.job.log.tgz.1 /var/lib/boinc/var/slot60/slots/16/
[2026-03-14 20:33:57] 2026-03-14 19:33:13,535 | INFO     | adding to output.list: log.48955006._044679.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/f8/log.48955006._044679.job.log.tg
[2026-03-14 20:33:57] 2026-03-14 19:33:13,535 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 20:33:57] 2026-03-14 19:33:13,536 | INFO     | summary of transferred files:
[2026-03-14 20:33:57] 2026-03-14 19:33:13,536 | INFO     |  -- lfn=log.48955006._044679.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 20:33:57] 2026-03-14 19:33:13,536 | INFO     | stage-out finished correctly
[2026-03-14 20:33:57] 2026-03-14 19:33:13,589 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 20:33:57] 2026-03-14 19:33:13,642 | INFO     | job 7043152622 has state=finished
[2026-03-14 20:33:57] 2026-03-14 19:33:13,642 | INFO     | preparing for final server update for job 7043152622 in state='finished'
[2026-03-14 20:33:57] 2026-03-14 19:33:13,642 | INFO     | reading metadata from: /var/lib/boinc/var/slot60/slots/16/PanDA_Pilot-7043152622/jobReport.json
[2026-03-14 20:33:57] 2026-03-14 19:33:13,645 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot60/slots/16/workernode_map.json
[2026-03-14 20:33:57] 2026-03-14 19:33:13,645 | INFO     | this job has now completed (state=finished)
[2026-03-14 20:33:57] 2026-03-14 19:33:13,645 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 20:33:57] 2026-03-14 19:33:13,645 | INFO     | log transfer has been attempted: DONE
[2026-03-14 20:33:57] 2026-03-14 19:33:13,645 | INFO     | job 7043152622 has finished - writing final server update
[2026-03-14 20:33:57] 2026-03-14 19:33:13,645 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3032744/.job.ad'
[2026-03-14 20:33:57] 2026-03-14 19:33:13,645 | INFO     | total number of processed events: 400 (read)
[2026-03-14 20:33:57] 2026-03-14 19:33:13,664 | INFO     | using path: /var/lib/boinc/var/slot60/slots/16/PanDA_Pilot-7043152622/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 20:33:57] 2026-03-14 19:33:13,664 | INFO     | extracted standard info from prmon json
[2026-03-14 20:33:57] 2026-03-14 19:33:13,664 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 20:33:57] 2026-03-14 19:33:13,664 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 20:33:57] 2026-03-14 19:33:13,665 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 20:33:57] 2026-03-14 19:33:13,665 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 20:33:57] 2026-03-14 19:33:13,666 | INFO     | fitting pss+swap vs Time
[2026-03-14 20:33:57] 2026-03-14 19:33:13,666 | INFO     | sum of square deviations: 130793150.0
[2026-03-14 20:33:57] 2026-03-14 19:33:13,666 | INFO     | sum of deviations: 877160175.0000001
[2026-03-14 20:33:57] 2026-03-14 19:33:13,666 | INFO     | mean x: 1773514367.0
[2026-03-14 20:33:57] 2026-03-14 19:33:13,666 | INFO     | mean y: 2322494.5733333332
[2026-03-14 20:33:57] 2026-03-14 19:33:13,666 | INFO     | intersect: -11891696209.943949
[2026-03-14 20:33:57] 2026-03-14 19:33:13,666 | INFO     | chi2: 0.00029644296005348355
[2026-03-14 20:33:57] 2026-03-14 19:33:13,666 | INFO     | current memory leak: 6.71 B/s (using 75 data points, chi2=0.00)
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | could have reported an average CPU frequency of 3542 MHz (6 samples)
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | ..............................
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | . Timing measurements:
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | . get job = 0 s
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | . initial setup = 5 s
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | . payload setup = 5 s
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | . stage-in = 0 s
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | . payload execution = 4989 s
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | . stage-out = 0 s
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | . log creation = 0 s
[2026-03-14 20:33:57] 2026-03-14 19:33:13,667 | INFO     | ..............................
[2026-03-14 20:33:57] 2026-03-14 19:33:13,827 | INFO     | 
[2026-03-14 20:33:57] 2026-03-14 19:33:13,827 | INFO     | job summary report
[2026-03-14 20:33:57] 2026-03-14 19:33:13,827 | INFO     | --------------------------------------------------
[2026-03-14 20:33:57] 2026-03-14 19:33:13,827 | INFO     | PanDA job id: 7043152622
[2026-03-14 20:33:57] 2026-03-14 19:33:13,827 | INFO     | task id: 48955006
[2026-03-14 20:33:57] 2026-03-14 19:33:13,827 | INFO     | errors: (none)
[2026-03-14 20:33:57] 2026-03-14 19:33:13,827 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 20:33:57] 2026-03-14 19:33:13,827 | INFO     | pilot state: finished 
[2026-03-14 20:33:57] 2026-03-14 19:33:13,827 | INFO     | transexitcode: 0
[2026-03-14 20:33:57] 2026-03-14 19:33:13,827 | INFO     | exeerrorcode: 0
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | exeerrordiag: 
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | exitcode: 0
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | exitmsg: OK
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | cpuconsumptiontime: 19142 s
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | nevents: 400
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | neventsw: 0
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | pid: 96327
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | pgrp: 96327
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | corecount: 4
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | event service: False
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | sizes: {0: 2280244, 11: 2280244, 4998: 2306642, 4999: 2315857}
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | --------------------------------------------------
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | 
[2026-03-14 20:33:57] 2026-03-14 19:33:13,828 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot60/slots/16
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,849 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,850 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,850 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,850 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,850 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 20:33:57] 2026-03-14 19:33:13,850 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,850 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 20:33:57] 2026-03-14 19:33:13,850 | INFO     | job 7043152622 has completed (purged errors)
[2026-03-14 20:33:57] 2026-03-14 19:33:13,850 | INFO     | overall cleanup function is called
[2026-03-14 20:33:57] 2026-03-14 19:33:14,865 | INFO     | --- collectZombieJob: --- 10, [96327]
[2026-03-14 20:33:57] 2026-03-14 19:33:14,865 | INFO     | zombie collector waiting for pid 96327
[2026-03-14 20:33:57] 2026-03-14 19:33:14,865 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 20:33:57] 2026-03-14 19:33:14,866 | INFO     | collected zombie processes
[2026-03-14 20:33:57] 2026-03-14 19:33:14,866 | INFO     | will attempt to kill all subprocesses of pid=96327
[2026-03-14 20:33:57] 2026-03-14 19:33:14,866 | WARNING  | process 96327 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 20:33:57] 2026-03-14 19:33:15,843 | INFO     | using path: /var/lib/boinc/var/slot60/slots/16/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 20:33:57] 2026-03-14 19:33:16,455 | INFO     | process IDs to be killed: [96327] (in reverse order)
[2026-03-14 20:33:57] 2026-03-14 19:33:16,711 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 20:33:57] 2026-03-14 19:33:16,711 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 20:33:57] 2026-03-14 19:33:16,771 | INFO     | did not find any defunct processes belonging to 96327
[2026-03-14 20:33:57] 2026-03-14 19:33:16,831 | INFO     | did not find any defunct processes belonging to 96327
[2026-03-14 20:33:57] 2026-03-14 19:33:16,832 | INFO     | ready for new job
[2026-03-14 20:33:57] 2026-03-14 19:33:16,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 20:33:57] 2026-03-14 19:33:16,834 | INFO     | **************************************
[2026-03-14 20:33:57] 2026-03-14 19:33:16,834 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 20:33:57] 2026-03-14 19:33:16,834 | INFO     | **************************************
[2026-03-14 20:33:57] 2026-03-14 19:33:16,834 | INFO     | 
[2026-03-14 20:33:57] 2026-03-14 19:33:16,843 | INFO     | architecture information:
[2026-03-14 20:33:57] 2026-03-14 19:33:16,843 | INFO     | executing command: cat /etc/os-release
[2026-03-14 20:33:57] 2026-03-14 19:33:16,863 | INFO     | cat /etc/os-release:
[2026-03-14 20:33:57] NAME="CentOS Linux"
[2026-03-14 20:33:57] VERSION="7 (Core)"
[2026-03-14 20:33:57] ID="centos"
[2026-03-14 20:33:57] ID_LIKE="rhel fedora"
[2026-03-14 20:33:57] VERSION_ID="7"
[2026-03-14 20:33:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 20:33:57] ANSI_COLOR="0;31"
[2026-03-14 20:33:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 20:33:57] HOME_URL="https://www.centos.org/"
[2026-03-14 20:33:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 20:33:57] 
[2026-03-14 20:33:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 20:33:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 20:33:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 20:33:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 20:33:57] 
[2026-03-14 20:33:57] 2026-03-14 19:33:16,864 | INFO     | **************************************
[2026-03-14 20:33:57] 2026-03-14 19:33:16,867 | INFO     | number of running child processes to parent process 96327: 1
[2026-03-14 20:33:57] 2026-03-14 19:33:16,867 | INFO     | maximum number of monitored processes: 6
[2026-03-14 20:33:57] 2026-03-14 19:33:16,867 | INFO     | aborting job monitoring since job object (job id=7043152622) has expired
[2026-03-14 20:33:57] 2026-03-14 19:33:17,367 | INFO     | executing command: df -mP /var/lib/boinc/var/slot60/slots/16
[2026-03-14 20:33:57] 2026-03-14 19:33:17,383 | INFO     | sufficient remaining disk space (20424163328 B)
[2026-03-14 20:33:57] 2026-03-14 19:33:17,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 20:33:57] 2026-03-14 19:33:17,383 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 20:33:57] 2026-03-14 19:33:17,383 | INFO     | update_server=False
[2026-03-14 20:33:57] 2026-03-14 19:33:17,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 20:33:57] 2026-03-14 19:33:17,384 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 20:33:57] 2026-03-14 19:33:17,384 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 20:33:57] 2026-03-14 19:33:17,384 | INFO     | will abort loop
[2026-03-14 20:33:57] 2026-03-14 19:33:17,387 | INFO     | all job control threads have been joined
[2026-03-14 20:33:57] 2026-03-14 19:33:17,481 | INFO     | all data control threads have been joined
[2026-03-14 20:33:57] 2026-03-14 19:33:18,055 | INFO     | all payload control threads have been joined
[2026-03-14 20:33:57] 2026-03-14 19:33:18,388 | INFO     | [job] retrieve thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:18,389 | INFO     | [job] job monitor thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:18,392 | INFO     | [job] control thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:18,486 | INFO     | [data] control thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:18,729 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 20:33:57] 2026-03-14 19:33:18,743 | INFO     | [payload] validate_post thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:19,060 | INFO     | [payload] control thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:19,389 | INFO     | [data] copytool_out thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:19,445 | INFO     | [job] validate thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:19,513 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:19,650 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 20:33:57] 2026-03-14 19:33:19,734 | INFO     | [job] queue monitor thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:19,784 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:19,839 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:19,850 | INFO     | [data] copytool_in thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:19,887 | INFO     | [payload] failed_post thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:23,658 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:27,602 | INFO     | job.realtimelogging is not enabled
[2026-03-14 20:33:57] 2026-03-14 19:33:28,607 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 20:33:57] 2026-03-14 19:33:46,636 | INFO     | PID=90304 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 20:33:57] 2026-03-14 19:33:46,636 | INFO     | .. there are 50 such processes running
[2026-03-14 20:33:57] 2026-03-14 19:33:46,636 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 20:33:57] 2026-03-14 19:33:46,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 20:33:57] 2026-03-14 19:33:46,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 20:33:57] 2026-03-14 19:33:50,963 | INFO     | [monitor] cgroup control has ended
[2026-03-14 20:33:57] 2026-03-14 19:33:52,539 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22619249719104)>', '<ExcThread(monitor, started 22619006174976)>']
[2026-03-14 20:33:57] 2026-03-14 19:33:52,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 20:33:57] 2026-03-14 19:33:52,667 | INFO     | [monitor] control thread has ended
[2026-03-14 20:33:57] 2026-03-14 19:33:57,564 | INFO     | all workflow threads have been joined
[2026-03-14 20:33:57] 2026-03-14 19:33:57,564 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 20:33:57] 2026-03-14 19:33:57,564 | INFO     | traces error code: 0
[2026-03-14 20:33:57] 2026-03-14 19:33:57,564 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 20:33:57] 2026-03-14 19:33:57,707 [wrapper] ==== pilot stdout END ====
[2026-03-14 20:33:57] 2026-03-14 19:33:57,710 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 20:33:57] 2026-03-14 19:33:57,711 [wrapper] pilotpid: 90304
[2026-03-14 20:33:57] 2026-03-14 19:33:57,715 [wrapper] Pilot exit status: 0
[2026-03-14 20:33:57] 2026-03-14 19:33:57,724 [wrapper] pandaids: 7043152622
[2026-03-14 20:33:57] 2026-03-14 19:33:57,863 [wrapper] cleanup supervisor_pilot  732072 90305
[2026-03-14 20:33:57] 2026-03-14 19:33:57,865 [wrapper] Test setup, not cleaning
[2026-03-14 20:33:57] 2026-03-14 19:33:57,867 [wrapper] apfmon messages muted
[2026-03-14 20:33:57] 2026-03-14 19:33:57,870 [wrapper] ==== wrapper stdout END ====
[2026-03-14 20:33:57] 2026-03-14 19:33:57,872 [wrapper] ==== wrapper stderr END ====
[2026-03-14 20:33:57]  *** Error codes and diagnostics ***
[2026-03-14 20:33:57]     "exeErrorCode": 0,
[2026-03-14 20:33:57]     "exeErrorDiag": "",
[2026-03-14 20:33:57]     "pilotErrorCode": 0,
[2026-03-14 20:33:57]     "pilotErrorDiag": "",
[2026-03-14 20:33:57]  *** Listing of results directory ***
[2026-03-14 20:33:57] total 624640
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc    585013 Mar 12 06:40 pilot3.tar.gz
[2026-03-14 20:33:57] -rwx------. 1 boinc boinc     36322 Mar 12 06:41 runpilot2-wrapper.sh
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc      5111 Mar 12 06:42 queuedata.json
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc       100 Mar 14 19:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 20:33:57] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 19:09 run_atlas
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc       105 Mar 14 19:09 job.xml
[2026-03-14 20:33:57] -rw-r--r--. 2 boinc boinc 440938075 Mar 14 19:09 EVNT.46701403._000885.pool.root.1
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc      6706 Mar 14 19:09 init_data.xml
[2026-03-14 20:33:57] -rw-r--r--. 2 boinc boinc     15845 Mar 14 19:09 start_atlas.sh
[2026-03-14 20:33:57] drwxrwx--x. 2 boinc boinc      4096 Mar 14 19:09 shared
[2026-03-14 20:33:57] -rw-r--r--. 2 boinc boinc    597522 Mar 14 19:09 input.tar.gz
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc         0 Mar 14 19:09 boinc_lockfile
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc      2565 Mar 14 19:09 pandaJob.out
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc   1005897 Mar 14 19:09 agis_schedconf.cvmfs.json
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc   1511579 Mar 14 19:09 agis_ddmendpoints.agis.ALL.json
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc       444 Mar 14 19:09 workernode_map.json
[2026-03-14 20:33:57] drwx------. 5 boinc boinc      4096 Mar 14 19:09 pilot3
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc 192703205 Mar 14 20:32 HITS.48955006._044679.pool.root.1
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc        95 Mar 14 20:33 pilot_heartbeat.json
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc       530 Mar 14 20:33 boinc_task_state.xml
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc      1030 Mar 14 20:33 memory_monitor_summary.json
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc    299980 Mar 14 20:33 log.48955006._044679.job.log.tgz.1
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc      6355 Mar 14 20:33 heartbeat.json
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc      8192 Mar 14 20:33 boinc_mmap_file
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc        27 Mar 14 20:33 wrapper_checkpoint.txt
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc      5189 Mar 14 20:33 pilotlog.txt
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc    728866 Mar 14 20:33 log.48955006._044679.job.log.1
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc       357 Mar 14 20:33 output.list
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc       620 Mar 14 20:33 runtime_log
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc   1044480 Mar 14 20:33 result.tar.gz
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc      9221 Mar 14 20:33 runtime_log.err
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc       663 Mar 14 20:33 fPlMDmsynK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmvSjLDmuOmckm.diag
[2026-03-14 20:33:57] -rw-r--r--. 1 boinc boinc     21264 Mar 14 20:33 stderr.txt
[2026-03-14 20:33:57] HITS file was successfully produced:
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc 192703205 Mar 14 20:32 shared/HITS.pool.root.1
[2026-03-14 20:33:57]  *** Contents of shared directory: ***
[2026-03-14 20:33:57] total 620420
[2026-03-14 20:33:57] -rw-r--r--. 2 boinc boinc 440938075 Mar 14 19:09 ATLAS.root_0
[2026-03-14 20:33:57] -rw-r--r--. 2 boinc boinc     15845 Mar 14 19:09 start_atlas.sh
[2026-03-14 20:33:57] -rw-r--r--. 2 boinc boinc    597522 Mar 14 19:09 input.tar.gz
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc 192703205 Mar 14 20:32 HITS.pool.root.1
[2026-03-14 20:33:57] -rw-------. 1 boinc boinc   1044480 Mar 14 20:33 result.tar.gz
20:33:59 (85712): run_atlas exited; CPU time 19359.640821
20:33:59 (85712): called boinc_finish(0)

</stderr_txt>
]]>

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