Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
18:44:30 (356817): wrapper (7.7.26015): starting
18:44:30 (356817): wrapper: running run_atlas (--nthreads 12)
[2026-03-12 18:44:30] Arguments: --nthreads 12
[2026-03-12 18:44:30] Threads: 12
[2026-03-12 18:44:30] Checking for CVMFS
[2026-03-12 18:44:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 18:44:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 18:44:31] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 18:44:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 18:44:31] 2.12.7.0 4877 349 58940 157217 3 54 4192321 4194304 2751 130560 0 813708 99.998 10779 1762 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-03-12 18:44:31] CVMFS is ok
[2026-03-12 18:44:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 18:44:31] Checking for apptainer binary...
[2026-03-12 18:44:31] apptainer is not installed, using version from CVMFS
[2026-03-12 18:44:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 18:44:32] Trebeth
[2026-03-12 18:44:32] apptainer works
[2026-03-12 18:44:32] Set ATHENA_PROC_NUMBER=12
[2026-03-12 18:44:32] Set ATHENA_CORE_NUMBER=12
[2026-03-12 18:44:32] Starting ATLAS job with PandaID=7037403465
[2026-03-12 18:44:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 20:38:01]  *** The last 200 lines of the pilot log: ***
[2026-03-12 20:38:01] 2026-03-13 00:37:05,232 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 20:38:01] 2026-03-13 00:37:05,324 | INFO     | job 7037403465 has state=finished
[2026-03-12 20:38:01] 2026-03-13 00:37:05,325 | INFO     | preparing for final server update for job 7037403465 in state='finished'
[2026-03-12 20:38:01] 2026-03-13 00:37:05,325 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-7037403465/jobReport.json
[2026-03-12 20:38:01] 2026-03-13 00:37:05,327 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-03-12 20:38:01] 2026-03-13 00:37:05,328 | INFO     | this job has now completed (state=finished)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,328 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,328 | INFO     | log transfer has been attempted: DONE
[2026-03-12 20:38:01] 2026-03-13 00:37:05,328 | INFO     | job 7037403465 has finished - writing final server update
[2026-03-12 20:38:01] 2026-03-13 00:37:05,328 | INFO     | total number of processed events: 400 (read)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,329 | INFO     | time since job start (6739s) is within the limit (349056.0s)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,355 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7037403465/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,356 | INFO     | extracted standard info from prmon json
[2026-03-12 20:38:01] 2026-03-13 00:37:05,356 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 20:38:01] 2026-03-13 00:37:05,356 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 20:38:01] 2026-03-13 00:37:05,357 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 20:38:01] 2026-03-13 00:37:05,357 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 20:38:01] 2026-03-13 00:37:05,359 | INFO     | fitting pss+swap vs Time
[2026-03-12 20:38:01] 2026-03-13 00:37:05,359 | INFO     | sum of square deviations: 424045160.0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,360 | INFO     | sum of deviations: 16953505947.000004
[2026-03-12 20:38:01] 2026-03-13 00:37:05,360 | INFO     | mean x: 1773358861.0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,360 | INFO     | mean y: 2603439.1441441444
[2026-03-12 20:38:01] 2026-03-13 00:37:05,360 | INFO     | intersect: -70897038467.22415
[2026-03-12 20:38:01] 2026-03-13 00:37:05,360 | INFO     | chi2: 3.297114224114239
[2026-03-12 20:38:01] 2026-03-13 00:37:05,360 | INFO     | sum of square deviations: 369281342.5
[2026-03-12 20:38:01] 2026-03-13 00:37:05,361 | INFO     | sum of deviations: 23909608556.000004
[2026-03-12 20:38:01] 2026-03-13 00:37:05,361 | INFO     | mean x: 1773358708.5
[2026-03-12 20:38:01] 2026-03-13 00:37:05,361 | INFO     | mean y: 2622002.452830189
[2026-03-12 20:38:01] 2026-03-13 00:37:05,361 | INFO     | intersect: -114815831219.58807
[2026-03-12 20:38:01] 2026-03-13 00:37:05,362 | INFO     | chi2: 2.529313649671421
[2026-03-12 20:38:01] 2026-03-13 00:37:05,362 | INFO     | current chi2=2.529313649671421 (change=23.287048074565437 %)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,362 | INFO     | right removable region: 105
[2026-03-12 20:38:01] 2026-03-13 00:37:05,362 | INFO     | sum of square deviations: 369281342.5
[2026-03-12 20:38:01] 2026-03-13 00:37:05,363 | INFO     | sum of deviations: -10285205699.5
[2026-03-12 20:38:01] 2026-03-13 00:37:05,363 | INFO     | mean x: 1773359013.5
[2026-03-12 20:38:01] 2026-03-13 00:37:05,363 | INFO     | mean y: 2678845.7641509436
[2026-03-12 20:38:01] 2026-03-13 00:37:05,363 | INFO     | intersect: 49394186441.114426
[2026-03-12 20:38:01] 2026-03-13 00:37:05,363 | INFO     | chi2: 1.0287993745754909
[2026-03-12 20:38:01] 2026-03-13 00:37:05,363 | INFO     | current chi2=1.0287993745754909 (change=68.7969750319501 %)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,363 | INFO     | sum of square deviations: 319447850.0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,364 | INFO     | sum of deviations: -14061801496.0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,364 | INFO     | mean x: 1773359166.0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,364 | INFO     | mean y: 2690050.7722772276
[2026-03-12 20:38:01] 2026-03-13 00:37:05,364 | INFO     | intersect: 78064334771.19882
[2026-03-12 20:38:01] 2026-03-13 00:37:05,365 | INFO     | chi2: 0.9147507528998381
[2026-03-12 20:38:01] 2026-03-13 00:37:05,365 | INFO     | current chi2=0.9147507528998381 (change=11.085603713815647 %)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,365 | INFO     | left removable region: 20
[2026-03-12 20:38:01] 2026-03-13 00:37:05,365 | INFO     | sum of square deviations: 190403570.0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,365 | INFO     | sum of deviations: 934384030.9999999
[2026-03-12 20:38:01] 2026-03-13 00:37:05,365 | INFO     | mean x: 1773359288.0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,366 | INFO     | mean y: 2686197.317647059
[2026-03-12 20:38:01] 2026-03-13 00:37:05,366 | INFO     | intersect: -8699874368.814226
[2026-03-12 20:38:01] 2026-03-13 00:37:05,366 | INFO     | chi2: 0.000622853426310017
[2026-03-12 20:38:01] 2026-03-13 00:37:05,366 | INFO     | current memory leak: 4.91 B/s (using 85 data points, chi2=0.00)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,366 | INFO     | could have reported an average CPU frequency of 2596 MHz (7 samples)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,367 | INFO     | ..............................
[2026-03-12 20:38:01] 2026-03-13 00:37:05,367 | INFO     | . Timing measurements:
[2026-03-12 20:38:01] 2026-03-13 00:37:05,367 | INFO     | . get job = 0 s
[2026-03-12 20:38:01] 2026-03-13 00:37:05,367 | INFO     | . initial setup = 5 s
[2026-03-12 20:38:01] 2026-03-13 00:37:05,367 | INFO     | . payload setup = 4 s
[2026-03-12 20:38:01] 2026-03-13 00:37:05,367 | INFO     | . stage-in = 0 s
[2026-03-12 20:38:01] 2026-03-13 00:37:05,367 | INFO     | . payload execution = 6717 s
[2026-03-12 20:38:01] 2026-03-13 00:37:05,367 | INFO     | . stage-out = 1 s
[2026-03-12 20:38:01] 2026-03-13 00:37:05,367 | INFO     | . log creation = 0 s
[2026-03-12 20:38:01] 2026-03-13 00:37:05,367 | INFO     | ..............................
[2026-03-12 20:38:01] 2026-03-13 00:37:05,905 | INFO     | 
[2026-03-12 20:38:01] 2026-03-13 00:37:05,905 | INFO     | job summary report
[2026-03-12 20:38:01] 2026-03-13 00:37:05,905 | INFO     | --------------------------------------------------
[2026-03-12 20:38:01] 2026-03-13 00:37:05,905 | INFO     | PanDA job id: 7037403465
[2026-03-12 20:38:01] 2026-03-13 00:37:05,905 | INFO     | task id: 48843731
[2026-03-12 20:38:01] 2026-03-13 00:37:05,905 | INFO     | errors: (none)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,905 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 20:38:01] 2026-03-13 00:37:05,906 | INFO     | pilot state: finished 
[2026-03-12 20:38:01] 2026-03-13 00:37:05,906 | INFO     | transexitcode: 0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,906 | INFO     | exeerrorcode: 0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,906 | INFO     | exeerrordiag: 
[2026-03-12 20:38:01] 2026-03-13 00:37:05,906 | INFO     | exitcode: 0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,906 | INFO     | exitmsg: OK
[2026-03-12 20:38:01] 2026-03-13 00:37:05,906 | INFO     | cpuconsumptiontime: 72840 s
[2026-03-12 20:38:01] 2026-03-13 00:37:05,906 | INFO     | nevents: 400
[2026-03-12 20:38:01] 2026-03-13 00:37:05,906 | INFO     | neventsw: 0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,906 | INFO     | pid: 366023
[2026-03-12 20:38:01] 2026-03-13 00:37:05,907 | INFO     | pgrp: 366023
[2026-03-12 20:38:01] 2026-03-13 00:37:05,907 | INFO     | corecount: 12
[2026-03-12 20:38:01] 2026-03-13 00:37:05,907 | INFO     | event service: False
[2026-03-12 20:38:01] 2026-03-13 00:37:05,907 | INFO     | sizes: {0: 2279970, 1: 2280260, 11: 2280260, 6725: 2307473, 6728: 2316679}
[2026-03-12 20:38:01] 2026-03-13 00:37:05,907 | INFO     | --------------------------------------------------
[2026-03-12 20:38:01] 2026-03-13 00:37:05,907 | INFO     | 
[2026-03-12 20:38:01] 2026-03-13 00:37:05,907 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-03-12 20:38:01] 2026-03-13 00:37:05,923 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,923 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,923 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,923 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,924 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,924 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,924 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,924 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,924 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,924 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,924 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,924 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,924 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,925 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,925 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,925 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,925 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,925 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,925 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,925 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 20:38:01] 2026-03-13 00:37:05,925 | INFO     | job 7037403465 has completed (purged errors)
[2026-03-12 20:38:01] 2026-03-13 00:37:05,926 | INFO     | overall cleanup function is called
[2026-03-12 20:38:01] 2026-03-13 00:37:06,934 | INFO     | --- collectZombieJob: --- 10, [366023]
[2026-03-12 20:38:01] 2026-03-13 00:37:06,934 | INFO     | zombie collector waiting for pid 366023
[2026-03-12 20:38:01] 2026-03-13 00:37:06,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 20:38:01] 2026-03-13 00:37:06,935 | INFO     | collected zombie processes
[2026-03-12 20:38:01] 2026-03-13 00:37:06,935 | INFO     | will attempt to kill all subprocesses of pid=366023
[2026-03-12 20:38:01] 2026-03-13 00:37:07,170 | INFO     | process IDs to be killed: [366023] (in reverse order)
[2026-03-12 20:38:01] 2026-03-13 00:37:07,236 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 20:38:01] 2026-03-13 00:37:07,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 20:38:01] 2026-03-13 00:37:07,242 | INFO     | did not find any defunct processes belonging to 366023
[2026-03-12 20:38:01] 2026-03-13 00:37:07,247 | INFO     | did not find any defunct processes belonging to 366023
[2026-03-12 20:38:01] 2026-03-13 00:37:07,247 | INFO     | ready for new job
[2026-03-12 20:38:01] 2026-03-13 00:37:07,247 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 20:38:01] 2026-03-13 00:37:07,249 | INFO     | **************************************
[2026-03-12 20:38:01] 2026-03-13 00:37:07,249 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 20:38:01] 2026-03-13 00:37:07,249 | INFO     | **************************************
[2026-03-12 20:38:01] 2026-03-13 00:37:07,249 | INFO     | 
[2026-03-12 20:38:01] 2026-03-13 00:37:07,273 | INFO     | architecture information:
[2026-03-12 20:38:01] 2026-03-13 00:37:07,274 | INFO     | executing command: cat /etc/os-release
[2026-03-12 20:38:01] 2026-03-13 00:37:07,285 | INFO     | cat /etc/os-release:
[2026-03-12 20:38:01] NAME="CentOS Linux"
[2026-03-12 20:38:01] VERSION="7 (Core)"
[2026-03-12 20:38:01] ID="centos"
[2026-03-12 20:38:01] ID_LIKE="rhel fedora"
[2026-03-12 20:38:01] VERSION_ID="7"
[2026-03-12 20:38:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 20:38:01] ANSI_COLOR="0;31"
[2026-03-12 20:38:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 20:38:01] HOME_URL="https://www.centos.org/"
[2026-03-12 20:38:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 20:38:01] 
[2026-03-12 20:38:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 20:38:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 20:38:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 20:38:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 20:38:01] 
[2026-03-12 20:38:01] 2026-03-13 00:37:07,286 | INFO     | **************************************
[2026-03-12 20:38:01] 2026-03-13 00:37:07,789 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-03-12 20:38:01] 2026-03-13 00:37:07,804 | INFO     | sufficient remaining disk space (398718926848 B)
[2026-03-12 20:38:01] 2026-03-13 00:37:07,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 20:38:01] 2026-03-13 00:37:07,804 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 20:38:01] 2026-03-13 00:37:07,804 | INFO     | update_server=False
[2026-03-12 20:38:01] 2026-03-13 00:37:07,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 20:38:01] 2026-03-13 00:37:07,805 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 20:38:01] 2026-03-13 00:37:08,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 20:38:01] 2026-03-13 00:37:08,460 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 20:38:01] 2026-03-13 00:37:08,460 | INFO     | aborting loop
[2026-03-12 20:38:01] 2026-03-13 00:37:08,729 | INFO     | all data control threads have been joined
[2026-03-12 20:38:01] 2026-03-13 00:37:08,807 | INFO     | [job] retrieve thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:08,836 | INFO     | [payload] validate_post thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:09,111 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:09,128 | INFO     | all job control threads have been joined
[2026-03-12 20:38:01] 2026-03-13 00:37:09,145 | INFO     | [job] validate thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:09,148 | INFO     | all payload control threads have been joined
[2026-03-12 20:38:01] 2026-03-13 00:37:09,218 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:09,236 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:09,314 | INFO     | [payload] failed_post thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:09,318 | INFO     | [data] copytool_in thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:09,465 | INFO     | [job] job monitor thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:09,735 | INFO     | [data] control thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:09,953 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:10,134 | INFO     | [job] control thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:10,154 | INFO     | [payload] control thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:10,243 | INFO     | [data] copytool_out thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:10,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 20:38:01] 2026-03-13 00:37:11,466 | INFO     | [job] queue monitor thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:11,810 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 20:38:01] 2026-03-13 00:37:38,687 | INFO     | PID=361216 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 20:38:01] 2026-03-13 00:37:38,687 | INFO     | .. there are 4 such processes running
[2026-03-12 20:38:01] 2026-03-13 00:37:38,688 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 20:38:01] 2026-03-13 00:37:38,688 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 20:38:01] 2026-03-13 00:37:38,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 20:38:01] 2026-03-13 00:37:56,165 | INFO     | [monitor] cgroup control has ended
[2026-03-12 20:38:01] 2026-03-13 00:37:56,370 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139712897365824)>', '<ExcThread(monitor, started 139712678967040)>']
[2026-03-12 20:38:01] 2026-03-13 00:37:56,779 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 20:38:01] 2026-03-13 00:37:56,780 | INFO     | [monitor] control thread has ended
[2026-03-12 20:38:01] 2026-03-13 00:38:01,395 | INFO     | all workflow threads have been joined
[2026-03-12 20:38:01] 2026-03-13 00:38:01,396 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 20:38:01] 2026-03-13 00:38:01,396 | INFO     | traces error code: 0
[2026-03-12 20:38:01] 2026-03-13 00:38:01,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 20:38:01] 2026-03-13 00:38:01,485 [wrapper] ==== pilot stdout END ====
[2026-03-12 20:38:01] 2026-03-13 00:38:01,488 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 20:38:01] 2026-03-13 00:38:01,490 [wrapper] pilotpid: 361216
[2026-03-12 20:38:01] 2026-03-13 00:38:01,492 [wrapper] Pilot exit status: 0
[2026-03-12 20:38:01] 2026-03-13 00:38:01,500 [wrapper] pandaids: 7037403465
[2026-03-12 20:38:01] 2026-03-13 00:38:01,543 [wrapper] cleanup supervisor_pilot  460229 361217
[2026-03-12 20:38:01] 2026-03-13 00:38:01,545 [wrapper] Test setup, not cleaning
[2026-03-12 20:38:01] 2026-03-13 00:38:01,547 [wrapper] apfmon messages muted
[2026-03-12 20:38:01] 2026-03-13 00:38:01,549 [wrapper] ==== wrapper stdout END ====
[2026-03-12 20:38:01] 2026-03-13 00:38:01,551 [wrapper] ==== wrapper stderr END ====
[2026-03-12 20:38:01]  *** Error codes and diagnostics ***
[2026-03-12 20:38:01]     "exeErrorCode": 0,
[2026-03-12 20:38:01]     "exeErrorDiag": "",
[2026-03-12 20:38:01]     "pilotErrorCode": 0,
[2026-03-12 20:38:01]     "pilotErrorDiag": "",
[2026-03-12 20:38:01]  *** Listing of results directory ***
[2026-03-12 20:38:01] total 444436
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc    584627 Mar  4 02:36 pilot3.tar.gz
[2026-03-12 20:38:01] -rwx------ 1 boinc boinc     36322 Mar  4 02:37 runpilot2-wrapper.sh
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc      5111 Mar  4 02:38 queuedata.json
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc       100 Mar 12 18:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 20:38:01] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 18:44 run_atlas
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc       105 Mar 12 18:44 job.xml
[2026-03-12 20:38:01] -rw-r--r-- 2 boinc boinc 235265043 Mar 12 18:44 EVNT.48451660._000002.pool.root.1
[2026-03-12 20:38:01] -rw-r--r-- 2 boinc boinc     15845 Mar 12 18:44 start_atlas.sh
[2026-03-12 20:38:01] drwxrwx--x 2 boinc boinc      4096 Mar 12 18:44 shared
[2026-03-12 20:38:01] -rw-r--r-- 2 boinc boinc    597964 Mar 12 18:44 input.tar.gz
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc      7579 Mar 12 18:44 init_data.xml
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc         0 Mar 12 18:44 boinc_lockfile
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc      2588 Mar 12 18:44 pandaJob.out
[2026-03-12 20:38:01] -rw------- 1 boinc boinc        50 Mar 12 18:44 setup.sh.local
[2026-03-12 20:38:01] -rw------- 1 boinc boinc   1006498 Mar 12 18:44 agis_schedconf.cvmfs.json
[2026-03-12 20:38:01] -rw------- 1 boinc boinc   1511578 Mar 12 18:44 agis_ddmendpoints.agis.ALL.json
[2026-03-12 20:38:01] -rw------- 1 boinc boinc       430 Mar 12 18:44 workernode_map.json
[2026-03-12 20:38:01] drwx------ 5 boinc boinc      4096 Mar 12 18:44 pilot3
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc       529 Mar 12 20:36 boinc_task_state.xml
[2026-03-12 20:38:01] -rw------- 1 boinc boinc 213061971 Mar 12 20:36 HITS.48843731._000085.pool.root.1
[2026-03-12 20:38:01] -rw------- 1 boinc boinc      1030 Mar 12 20:36 memory_monitor_summary.json
[2026-03-12 20:38:01] -rw------- 1 boinc boinc    434538 Mar 12 20:37 log.48843731._000085.job.log.tgz.1
[2026-03-12 20:38:01] -rw------- 1 boinc boinc      6326 Mar 12 20:37 heartbeat.json
[2026-03-12 20:38:01] -rw------- 1 boinc boinc        95 Mar 12 20:37 pilot_heartbeat.json
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc        27 Mar 12 20:38 wrapper_checkpoint.txt
[2026-03-12 20:38:01] -rw------- 1 boinc boinc      4826 Mar 12 20:38 pilotlog.txt
[2026-03-12 20:38:01] -rw------- 1 boinc boinc    981353 Mar 12 20:38 log.48843731._000085.job.log.1
[2026-03-12 20:38:01] -rw------- 1 boinc boinc       357 Mar 12 20:38 output.list
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc       620 Mar 12 20:38 runtime_log
[2026-03-12 20:38:01] -rw------- 1 boinc boinc   1433600 Mar 12 20:38 result.tar.gz
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc      9403 Mar 12 20:38 runtime_log.err
[2026-03-12 20:38:01] -rw------- 1 boinc boinc       651 Mar 12 20:38 mK8NDmpyvH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmNhJLDm2J1Znm.diag
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc     20961 Mar 12 20:38 stderr.txt
[2026-03-12 20:38:01] -rw-r--r-- 1 boinc boinc      8192 Mar 12 20:38 boinc_mmap_file
[2026-03-12 20:38:01] HITS file was successfully produced:
[2026-03-12 20:38:01] -rw------- 1 boinc boinc 213061971 Mar 12 20:36 shared/HITS.pool.root.1
[2026-03-12 20:38:01]  *** Contents of shared directory: ***
[2026-03-12 20:38:01] total 439832
[2026-03-12 20:38:01] -rw-r--r-- 2 boinc boinc 235265043 Mar 12 18:44 ATLAS.root_0
[2026-03-12 20:38:01] -rw-r--r-- 2 boinc boinc     15845 Mar 12 18:44 start_atlas.sh
[2026-03-12 20:38:01] -rw-r--r-- 2 boinc boinc    597964 Mar 12 18:44 input.tar.gz
[2026-03-12 20:38:01] -rw------- 1 boinc boinc 213061971 Mar 12 20:36 HITS.pool.root.1
[2026-03-12 20:38:01] -rw------- 1 boinc boinc   1433600 Mar 12 20:38 result.tar.gz
20:38:03 (356817): run_atlas exited; CPU time 72998.981728
20:38:03 (356817): called boinc_finish(0)

</stderr_txt>
]]>

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