Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
07:59:38 (1783726): wrapper (7.7.26015): starting
07:59:38 (1783726): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 07:59:38] Arguments: --nthreads 4
[2026-03-12 07:59:38] Threads: 4
[2026-03-12 07:59:38] Checking for CVMFS
[2026-03-12 07:59:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 07:59:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 07:59:38] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 07:59:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 07:59:39] 2.13.3.0 60531 2753 50876 157199 3 188 2693858 4096001 2748 130560 0 4181241 99.995 100610 985 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2026-03-12 07:59:39] CVMFS is ok
[2026-03-12 07:59:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 07:59:39] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-12 07:59:39] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-12 07:59:39] Further information can be found at the LHC@home message board.
[2026-03-12 07:59:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 07:59:39] Checking for apptainer binary...
[2026-03-12 07:59:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 07:59:39] Running /usr/bin/apptainer --version
[2026-03-12 07:59:39] apptainer version 1.4.5
[2026-03-12 07:59:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 07:59:39] ASRock-B760M
[2026-03-12 07:59:39] apptainer works
[2026-03-12 07:59:39] Set ATHENA_PROC_NUMBER=4
[2026-03-12 07:59:39] Set ATHENA_CORE_NUMBER=4
[2026-03-12 07:59:39] Starting ATLAS job with PandaID=7037294032
[2026-03-12 07:59:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 09:05:06]  *** The last 200 lines of the pilot log: ***
[2026-03-12 09:05:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-12 09:05:06]  is_altstaged=None
[2026-03-12 09:05:06]  is_tar=False
[2026-03-12 09:05:06]  lfn=log.48700874._001643.job.log.tgz.1
[2026-03-12 09:05:06]  mtime=0
[2026-03-12 09:05:06]  protocol_id=None
[2026-03-12 09:05:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 09:05:06]  replicas=None
[2026-03-12 09:05:06]  scope=mc23_13p6TeV
[2026-03-12 09:05:06]  status=None
[2026-03-12 09:05:06]  status_code=0
[2026-03-12 09:05:06]  storage_token=
[2026-03-12 09:05:06]  surl=/home/whitlerd/Desktop/BOINC/slots/4/PanDA_Pilot-7037294032/log.48700874._001643.job.log.tgz.1
[2026-03-12 09:05:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/20/log.48700874._001643.job.log.tgz.1
[2026-03-12 09:05:06]  workdir=None
[2026-03-12 09:05:06] ]
[2026-03-12 09:05:06] 2026-03-12 13:04:30,756 | INFO     | transferring file log.48700874._001643.job.log.tgz.1 from /home/whitlerd/Desktop/BOINC/slots/4/PanDA_Pilot-7037294032/log.48700874._001643.job.log.tgz.1 to /home/w
[2026-03-12 09:05:06] 2026-03-12 13:04:30,757 | INFO     | executing command: /usr/bin/env mv /home/whitlerd/Desktop/BOINC/slots/4/PanDA_Pilot-7037294032/log.48700874._001643.job.log.tgz.1 /home/whitlerd/Desktop/BOINC/slot
[2026-03-12 09:05:06] 2026-03-12 13:04:30,770 | INFO     | adding to output.list: log.48700874._001643.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/20/log.48700874._001643.job.log.tg
[2026-03-12 09:05:06] 2026-03-12 13:04:30,770 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 09:05:06] 2026-03-12 13:04:30,771 | INFO     | summary of transferred files:
[2026-03-12 09:05:06] 2026-03-12 13:04:30,771 | INFO     |  -- lfn=log.48700874._001643.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 09:05:06] 2026-03-12 13:04:30,771 | INFO     | stage-out finished correctly
[2026-03-12 09:05:06] 2026-03-12 13:04:30,864 | WARNING  | process 1792532 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 09:05:06] 2026-03-12 13:04:30,865 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/4/PanDA_Pilot-7037294032/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 09:05:06] 2026-03-12 13:04:30,952 | INFO     | number of running child processes to parent process 1792532: 1
[2026-03-12 09:05:06] 2026-03-12 13:04:30,952 | INFO     | maximum number of monitored processes: 6
[2026-03-12 09:05:06] 2026-03-12 13:04:30,966 | INFO     | time since job start (3881s) is within the limit (349056.0s)
[2026-03-12 09:05:06] 2026-03-12 13:04:32,972 | INFO     | time since job start (3883s) is within the limit (349056.0s)
[2026-03-12 09:05:06] 2026-03-12 13:04:33,196 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 09:05:06] 2026-03-12 13:04:33,233 | INFO     | job 7037294032 has state=finished
[2026-03-12 09:05:06] 2026-03-12 13:04:33,234 | INFO     | preparing for final server update for job 7037294032 in state='finished'
[2026-03-12 09:05:06] 2026-03-12 13:04:33,234 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/4/PanDA_Pilot-7037294032/jobReport.json
[2026-03-12 09:05:06] 2026-03-12 13:04:33,235 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/4/workernode_map.json
[2026-03-12 09:05:06] 2026-03-12 13:04:33,235 | INFO     | this job has now completed (state=finished)
[2026-03-12 09:05:06] 2026-03-12 13:04:33,235 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 09:05:06] 2026-03-12 13:04:33,235 | INFO     | log transfer has been attempted: DONE
[2026-03-12 09:05:06] 2026-03-12 13:04:33,235 | INFO     | job 7037294032 has finished - writing final server update
[2026-03-12 09:05:06] 2026-03-12 13:04:33,235 | INFO     | total number of processed events: 400 (read)
[2026-03-12 09:05:06] 2026-03-12 13:04:33,238 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/4/PanDA_Pilot-7037294032/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 09:05:06] 2026-03-12 13:04:33,238 | INFO     | extracted standard info from prmon json
[2026-03-12 09:05:06] 2026-03-12 13:04:33,238 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 09:05:06] 2026-03-12 13:04:33,238 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 09:05:06] 2026-03-12 13:04:33,239 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 09:05:06] 2026-03-12 13:04:33,239 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 09:05:06] 2026-03-12 13:04:33,239 | INFO     | fitting pss+swap vs Time
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | sum of square deviations: 57407588.0
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | sum of deviations: -729211384.9999999
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | mean x: 1773318819.0
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | mean y: 2328522.4385964912
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | intersect: 22527648207.521935
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | chi2: 0.010638659224632384
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | current memory leak: -12.70 B/s (using 57 data points, chi2=0.01)
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | could have reported an average CPU frequency of 3027 MHz (6 samples)
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | ..............................
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | . Timing measurements:
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | . get job = 0 s
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | . initial setup = 4 s
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | . payload setup = 2 s
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | . stage-in = 0 s
[2026-03-12 09:05:06] 2026-03-12 13:04:33,240 | INFO     | . payload execution = 3866 s
[2026-03-12 09:05:06] 2026-03-12 13:04:33,241 | INFO     | . stage-out = 0 s
[2026-03-12 09:05:06] 2026-03-12 13:04:33,241 | INFO     | . log creation = 0 s
[2026-03-12 09:05:06] 2026-03-12 13:04:33,241 | INFO     | ..............................
[2026-03-12 09:05:06] 2026-03-12 13:04:33,377 | INFO     | 
[2026-03-12 09:05:06] 2026-03-12 13:04:33,377 | INFO     | job summary report
[2026-03-12 09:05:06] 2026-03-12 13:04:33,377 | INFO     | --------------------------------------------------
[2026-03-12 09:05:06] 2026-03-12 13:04:33,377 | INFO     | PanDA job id: 7037294032
[2026-03-12 09:05:06] 2026-03-12 13:04:33,377 | INFO     | task id: 48700874
[2026-03-12 09:05:06] 2026-03-12 13:04:33,377 | INFO     | errors: (none)
[2026-03-12 09:05:06] 2026-03-12 13:04:33,377 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 09:05:06] 2026-03-12 13:04:33,377 | INFO     | pilot state: finished 
[2026-03-12 09:05:06] 2026-03-12 13:04:33,377 | INFO     | transexitcode: 0
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | exeerrorcode: 0
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | exeerrordiag: 
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | exitcode: 0
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | exitmsg: OK
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | cpuconsumptiontime: 14687 s
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | nevents: 400
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | neventsw: 0
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | pid: 1792532
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | pgrp: 1792532
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | corecount: 4
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | event service: False
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | sizes: {0: 2280220, 11: 2280220, 3869: 2306102, 3870: 2315128, 3872: 2315378}
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | --------------------------------------------------
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | 
[2026-03-12 09:05:06] 2026-03-12 13:04:33,378 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/4
[2026-03-12 09:05:06] 2026-03-12 13:04:33,391 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,391 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,391 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,391 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | job 7037294032 has completed (purged errors)
[2026-03-12 09:05:06] 2026-03-12 13:04:33,392 | INFO     | overall cleanup function is called
[2026-03-12 09:05:06] 2026-03-12 13:04:34,399 | INFO     | --- collectZombieJob: --- 10, [1792532]
[2026-03-12 09:05:06] 2026-03-12 13:04:34,399 | INFO     | zombie collector waiting for pid 1792532
[2026-03-12 09:05:06] 2026-03-12 13:04:34,399 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 09:05:06] 2026-03-12 13:04:34,399 | INFO     | collected zombie processes
[2026-03-12 09:05:06] 2026-03-12 13:04:34,399 | INFO     | will attempt to kill all subprocesses of pid=1792532
[2026-03-12 09:05:06] 2026-03-12 13:04:34,492 | INFO     | process IDs to be killed: [1792532] (in reverse order)
[2026-03-12 09:05:06] 2026-03-12 13:04:34,527 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 09:05:06] 2026-03-12 13:04:34,527 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 09:05:06] 2026-03-12 13:04:34,531 | INFO     | did not find any defunct processes belonging to 1792532
[2026-03-12 09:05:06] 2026-03-12 13:04:34,533 | INFO     | did not find any defunct processes belonging to 1792532
[2026-03-12 09:05:06] 2026-03-12 13:04:34,533 | INFO     | ready for new job
[2026-03-12 09:05:06] 2026-03-12 13:04:34,533 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 09:05:06] 2026-03-12 13:04:34,534 | INFO     | **************************************
[2026-03-12 09:05:06] 2026-03-12 13:04:34,534 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 09:05:06] 2026-03-12 13:04:34,534 | INFO     | **************************************
[2026-03-12 09:05:06] 2026-03-12 13:04:34,534 | INFO     | 
[2026-03-12 09:05:06] 2026-03-12 13:04:34,535 | INFO     | architecture information:
[2026-03-12 09:05:06] 2026-03-12 13:04:34,535 | INFO     | executing command: cat /etc/os-release
[2026-03-12 09:05:06] 2026-03-12 13:04:34,545 | INFO     | cat /etc/os-release:
[2026-03-12 09:05:06] NAME="CentOS Linux"
[2026-03-12 09:05:06] VERSION="7 (Core)"
[2026-03-12 09:05:06] ID="centos"
[2026-03-12 09:05:06] ID_LIKE="rhel fedora"
[2026-03-12 09:05:06] VERSION_ID="7"
[2026-03-12 09:05:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 09:05:06] ANSI_COLOR="0;31"
[2026-03-12 09:05:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 09:05:06] HOME_URL="https://www.centos.org/"
[2026-03-12 09:05:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 09:05:06] 
[2026-03-12 09:05:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 09:05:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 09:05:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 09:05:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 09:05:06] 
[2026-03-12 09:05:06] 2026-03-12 13:04:34,545 | INFO     | **************************************
[2026-03-12 09:05:06] 2026-03-12 13:04:35,048 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/4
[2026-03-12 09:05:06] 2026-03-12 13:04:35,059 | INFO     | sufficient remaining disk space (419447177216 B)
[2026-03-12 09:05:06] 2026-03-12 13:04:35,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 09:05:06] 2026-03-12 13:04:35,060 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 09:05:06] 2026-03-12 13:04:35,060 | INFO     | update_server=False
[2026-03-12 09:05:06] 2026-03-12 13:04:35,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 09:05:06] 2026-03-12 13:04:35,060 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 09:05:06] 2026-03-12 13:04:35,060 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 09:05:06] 2026-03-12 13:04:35,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 09:05:06] 2026-03-12 13:04:35,061 | INFO     | aborting loop
[2026-03-12 09:05:06] 2026-03-12 13:04:35,822 | INFO     | all data control threads have been joined
[2026-03-12 09:05:06] 2026-03-12 13:04:36,065 | INFO     | [job] retrieve thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:36,066 | INFO     | [job] job monitor thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:36,066 | INFO     | [job] queue monitor thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:36,226 | INFO     | all payload control threads have been joined
[2026-03-12 09:05:06] 2026-03-12 13:04:36,228 | INFO     | [data] copytool_in thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:36,235 | INFO     | [payload] validate_post thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:36,306 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 09:05:06] 2026-03-12 13:04:36,572 | INFO     | all job control threads have been joined
[2026-03-12 09:05:06] 2026-03-12 13:04:36,828 | INFO     | [data] control thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:37,229 | INFO     | [payload] control thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:37,240 | INFO     | [payload] failed_post thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:37,397 | INFO     | [job] validate thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:37,402 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:37,471 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:37,477 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:37,577 | INFO     | [job] control thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:38,311 | INFO     | [data] copytool_out thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:39,067 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:45,894 | INFO     | job.realtimelogging is not enabled
[2026-03-12 09:05:06] 2026-03-12 13:04:46,899 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 09:05:06] 2026-03-12 13:04:55,330 | INFO     | [monitor] cgroup control has ended
[2026-03-12 09:05:06] 2026-03-12 13:04:55,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130488899323712)>', '<ExcThread(monitor, started 130488270313216)>']
[2026-03-12 09:05:06] 2026-03-12 13:05:00,812 | INFO     | all workflow threads have been joined
[2026-03-12 09:05:06] 2026-03-12 13:05:00,812 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 09:05:06] 2026-03-12 13:05:00,812 | INFO     | traces error code: 0
[2026-03-12 09:05:06] 2026-03-12 13:05:00,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 09:05:06] 2026-03-12 13:05:06,146 | INFO     | PID=1787927 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 09:05:06] 2026-03-12 13:05:06,147 | INFO     | .. there are 4 such processes running
[2026-03-12 09:05:06] 2026-03-12 13:05:06,147 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 09:05:06] 2026-03-12 13:05:06,147 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 09:05:06] 2026-03-12 13:05:06,147 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 09:05:06] 2026-03-12 13:05:06,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 09:05:06] 2026-03-12 13:05:06,147 | INFO     | [monitor] control thread has ended
[2026-03-12 09:05:06] 2026-03-12 13:05:06,230 [wrapper] ==== pilot stdout END ====
[2026-03-12 09:05:06] 2026-03-12 13:05:06,232 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 09:05:06] 2026-03-12 13:05:06,233 [wrapper] pilotpid: 1787927
[2026-03-12 09:05:06] 2026-03-12 13:05:06,234 [wrapper] Pilot exit status: 0
[2026-03-12 09:05:06] 2026-03-12 13:05:06,240 [wrapper] pandaids: 7037294032
[2026-03-12 09:05:06] 2026-03-12 13:05:06,252 [wrapper] cleanup supervisor_pilot 1817630 1787928
[2026-03-12 09:05:06] 2026-03-12 13:05:06,254 [wrapper] Test setup, not cleaning
[2026-03-12 09:05:06] 2026-03-12 13:05:06,255 [wrapper] apfmon messages muted
[2026-03-12 09:05:06] 2026-03-12 13:05:06,256 [wrapper] ==== wrapper stdout END ====
[2026-03-12 09:05:06] 2026-03-12 13:05:06,257 [wrapper] ==== wrapper stderr END ====
[2026-03-12 09:05:06]  *** Error codes and diagnostics ***
[2026-03-12 09:05:06]     "exeErrorCode": 0,
[2026-03-12 09:05:06]     "exeErrorDiag": "",
[2026-03-12 09:05:06]     "pilotErrorCode": 0,
[2026-03-12 09:05:06]     "pilotErrorDiag": "",
[2026-03-12 09:05:06]  *** Listing of results directory ***
[2026-03-12 09:05:06] total 332028
[2026-03-12 09:05:06] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  4 02:36 queuedata.json
[2026-03-12 09:05:06] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  4 02:36 pilot3.tar.gz
[2026-03-12 09:05:06] -rwx------ 1 whitlerd whitlerd     36322 Mar  4 02:36 runpilot2-wrapper.sh
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar 12 07:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 09:05:06] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar 12 07:59 run_atlas
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar 12 07:59 job.xml
[2026-03-12 09:05:06] -rw-r--r-- 2 whitlerd whitlerd 189075792 Mar 12 07:59 EVNT.48700872._000064.pool.root.1
[2026-03-12 09:05:06] drwxrwx--x 2 whitlerd whitlerd      4096 Mar 12 07:59 shared
[2026-03-12 09:05:06] -rw-r--r-- 2 whitlerd whitlerd    597957 Mar 12 07:59 input.tar.gz
[2026-03-12 09:05:06] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 12 07:59 start_atlas.sh
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 12 07:59 boinc_setup_complete
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd      9182 Mar 12 07:59 init_data.xml
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 12 07:59 boinc_lockfile
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd      2550 Mar 12 07:59 pandaJob.out
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd   1006241 Mar 12 07:59 agis_schedconf.cvmfs.json
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd   1511578 Mar 12 07:59 agis_ddmendpoints.agis.ALL.json
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd       415 Mar 12 07:59 workernode_map.json
[2026-03-12 09:05:06] drwx------ 5 whitlerd whitlerd      4096 Mar 12 07:59 pilot3
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd 145280262 Mar 12 09:04 HITS.48700874._001643.pool.root.1
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd        95 Mar 12 09:04 pilot_heartbeat.json
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd      1018 Mar 12 09:04 memory_monitor_summary.json
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd    251159 Mar 12 09:04 log.48700874._001643.job.log.tgz.1
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd      6280 Mar 12 09:04 heartbeat.json
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd       529 Mar 12 09:04 boinc_task_state.xml
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar 12 09:05 boinc_mmap_file
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd        27 Mar 12 09:05 wrapper_checkpoint.txt
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd       822 Mar 12 09:05 pilotlog.txt
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd    597988 Mar 12 09:05 log.48700874._001643.job.log.1
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd       357 Mar 12 09:05 output.list
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar 12 09:05 runtime_log
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd    870400 Mar 12 09:05 result.tar.gz
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd      9019 Mar 12 09:05 runtime_log.err
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd       648 Mar 12 09:05 r4QKDm0xvH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmncJLDmR4DPdm.diag
[2026-03-12 09:05:06] -rw-rw-r-- 1 whitlerd whitlerd     21577 Mar 12 09:05 stderr.txt
[2026-03-12 09:05:06] HITS file was successfully produced:
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd 145280262 Mar 12 09:04 shared/HITS.pool.root.1
[2026-03-12 09:05:06]  *** Contents of shared directory: ***
[2026-03-12 09:05:06] total 327984
[2026-03-12 09:05:06] -rw-r--r-- 2 whitlerd whitlerd 189075792 Mar 12 07:59 ATLAS.root_0
[2026-03-12 09:05:06] -rw-r--r-- 2 whitlerd whitlerd    597957 Mar 12 07:59 input.tar.gz
[2026-03-12 09:05:06] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 12 07:59 start_atlas.sh
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd 145280262 Mar 12 09:04 HITS.pool.root.1
[2026-03-12 09:05:06] -rw------- 1 whitlerd whitlerd    870400 Mar 12 09:05 result.tar.gz
09:05:07 (1783726): run_atlas exited; CPU time 14729.355444
09:05:07 (1783726): called boinc_finish(0)

</stderr_txt>
]]>

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