Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:16:20 (2116875): wrapper (7.7.26015): starting
00:16:20 (2116875): wrapper: running run_atlas (--nthreads 2)
[2026-03-13 00:16:20] Arguments: --nthreads 2
[2026-03-13 00:16:20] Threads: 2
[2026-03-13 00:16:20] Checking for CVMFS
[2026-03-13 00:16:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 00:16:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 00:16:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 00:16:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 00:16:20] 2.9.2.0 35068 21963 64140 157220 0 49 30353119 36864000 0 130560 0 6063970 99.976 824621 12698 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 00:16:20] CVMFS is ok
[2026-03-13 00:16:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 00:16:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 00:16:20] Further information can be found at the LHC@home message board.
[2026-03-13 00:16:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 00:16:20] Checking for apptainer binary...
[2026-03-13 00:16:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 00:16:20] Running /usr/bin/apptainer --version
[2026-03-13 00:16:20] apptainer version 1.4.1-1.1
[2026-03-13 00:16:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 00:16:20] legendA269
[2026-03-13 00:16:20] apptainer works
[2026-03-13 00:16:20] Set ATHENA_PROC_NUMBER=2
[2026-03-13 00:16:20] Set ATHENA_CORE_NUMBER=2
[2026-03-13 00:16:20] Starting ATLAS job with PandaID=7050533040
[2026-03-13 00:16:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 02:51:02]  *** The last 200 lines of the pilot log: ***
[2026-03-13 02:51:02] 2026-03-13 01:50:30,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 02:51:02] 2026-03-13 01:50:30,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 02:51:02] 2026-03-13 01:50:30,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 02:51:02] 2026-03-13 01:50:30,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 02:51:02] 2026-03-13 01:50:30,882 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 02:51:02] 2026-03-13 01:50:30,882 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 02:51:02] 2026-03-13 01:50:30,882 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 02:51:02] 2026-03-13 01:50:30,882 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 02:51:02] 2026-03-13 01:50:30,882 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 02:51:02] 2026-03-13 01:50:30,882 | INFO     | job 7050533040 has completed (purged errors)
[2026-03-13 02:51:02] 2026-03-13 01:50:30,882 | INFO     | overall cleanup function is called
[2026-03-13 02:51:02] 2026-03-13 01:50:31,352 | WARNING  | process 2125312 can no longer be monitored (due to stat problems) - aborting
[2026-03-13 02:51:02] 2026-03-13 01:50:31,375 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 02:51:02] 2026-03-13 01:50:31,402 | INFO     | number of running child processes to parent process 2125312: 1
[2026-03-13 02:51:02] 2026-03-13 01:50:31,402 | INFO     | maximum number of monitored processes: 6
[2026-03-13 02:51:02] 2026-03-13 01:50:31,402 | INFO     | aborting job monitoring since job object (job id=7050533040) has expired
[2026-03-13 02:51:02] 2026-03-13 01:50:31,888 | INFO     | --- collectZombieJob: --- 10, [2125312]
[2026-03-13 02:51:02] 2026-03-13 01:50:31,889 | INFO     | zombie collector waiting for pid 2125312
[2026-03-13 02:51:02] 2026-03-13 01:50:31,889 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 02:51:02] 2026-03-13 01:50:31,889 | INFO     | collected zombie processes
[2026-03-13 02:51:02] 2026-03-13 01:50:31,889 | INFO     | will attempt to kill all subprocesses of pid=2125312
[2026-03-13 02:51:02] 2026-03-13 01:50:31,921 | INFO     | process IDs to be killed: [2125312] (in reverse order)
[2026-03-13 02:51:02] 2026-03-13 01:50:31,942 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 02:51:02] 2026-03-13 01:50:31,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 02:51:02] 2026-03-13 01:50:31,943 | INFO     | did not find any defunct processes belonging to 2125312
[2026-03-13 02:51:02] 2026-03-13 01:50:31,944 | INFO     | did not find any defunct processes belonging to 2125312
[2026-03-13 02:51:02] 2026-03-13 01:50:31,944 | INFO     | ready for new job
[2026-03-13 02:51:02] 2026-03-13 01:50:31,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 02:51:02] 2026-03-13 01:50:31,944 | INFO     | **************************************
[2026-03-13 02:51:02] 2026-03-13 01:50:31,944 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 02:51:02] 2026-03-13 01:50:31,944 | INFO     | **************************************
[2026-03-13 02:51:02] 2026-03-13 01:50:31,944 | INFO     | 
[2026-03-13 02:51:02] 2026-03-13 01:50:31,945 | INFO     | architecture information:
[2026-03-13 02:51:02] 2026-03-13 01:50:31,945 | INFO     | executing command: cat /etc/os-release
[2026-03-13 02:51:02] 2026-03-13 01:50:31,953 | INFO     | cat /etc/os-release:
[2026-03-13 02:51:02] NAME="CentOS Linux"
[2026-03-13 02:51:02] VERSION="7 (Core)"
[2026-03-13 02:51:02] ID="centos"
[2026-03-13 02:51:02] ID_LIKE="rhel fedora"
[2026-03-13 02:51:02] VERSION_ID="7"
[2026-03-13 02:51:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 02:51:02] ANSI_COLOR="0;31"
[2026-03-13 02:51:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 02:51:02] HOME_URL="https://www.centos.org/"
[2026-03-13 02:51:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 02:51:02] 
[2026-03-13 02:51:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 02:51:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 02:51:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 02:51:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 02:51:02] 
[2026-03-13 02:51:02] 2026-03-13 01:50:31,953 | INFO     | **************************************
[2026-03-13 02:51:02] 2026-03-13 01:50:32,457 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 02:51:02] 2026-03-13 01:50:32,470 | INFO     | sufficient remaining disk space (329444753408 B)
[2026-03-13 02:51:02] 2026-03-13 01:50:32,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 02:51:02] 2026-03-13 01:50:32,470 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 02:51:02] 2026-03-13 01:50:32,470 | INFO     | update_server=False
[2026-03-13 02:51:02] 2026-03-13 01:50:32,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 02:51:02] 2026-03-13 01:50:32,470 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 02:51:02] 2026-03-13 01:50:32,470 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 02:51:02] 2026-03-13 01:50:32,470 | INFO     | aborting loop
[2026-03-13 02:51:02] 2026-03-13 01:50:32,793 | INFO     | all payload control threads have been joined
[2026-03-13 02:51:02] 2026-03-13 01:50:33,288 | INFO     | all data control threads have been joined
[2026-03-13 02:51:02] 2026-03-13 01:50:33,475 | INFO     | [job] queue monitor thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:33,476 | INFO     | [job] retrieve thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:33,476 | INFO     | [job] job monitor thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:33,584 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:33,631 | INFO     | all job control threads have been joined
[2026-03-13 02:51:02] 2026-03-13 01:50:33,726 | INFO     | [data] copytool_in thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:33,799 | INFO     | [payload] control thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:33,901 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 02:51:02] 2026-03-13 01:50:33,924 | INFO     | [payload] failed_post thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:34,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 02:51:02] 2026-03-13 01:50:34,084 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:34,294 | INFO     | [data] control thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:34,609 | INFO     | [payload] validate_post thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:34,637 | INFO     | [job] control thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:34,878 | INFO     | [job] validate thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:34,926 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:35,907 | INFO     | [data] copytool_out thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:38,007 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:43,004 | INFO     | job.realtimelogging is not enabled
[2026-03-13 02:51:02] 2026-03-13 01:50:44,010 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 02:51:02] 2026-03-13 01:50:52,005 | INFO     | [monitor] cgroup control has ended
[2026-03-13 02:51:02] 2026-03-13 01:50:53,254 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140563176367936)>', '<ExcThread(monitor, started 140562434864896)>']
[2026-03-13 02:51:02] 2026-03-13 01:50:58,280 | INFO     | all workflow threads have been joined
[2026-03-13 02:51:02] 2026-03-13 01:50:58,281 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 02:51:02] 2026-03-13 01:50:58,282 | INFO     | traces error code: 0
[2026-03-13 02:51:02] 2026-03-13 01:50:58,282 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 02:51:02] 2026-03-13 01:51:02,306 | INFO     | PID=2120903 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 02:51:02] 2026-03-13 01:51:02,306 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 02:51:02] 2026-03-13 01:51:02,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 02:51:02] 2026-03-13 01:51:02,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 02:51:02] 2026-03-13 01:51:02,306 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 02:51:02] 2026-03-13 01:51:02,306 | INFO     | [monitor] control thread has ended
[2026-03-13 02:51:02] 2026-03-13 01:51:02,345 [wrapper] ==== pilot stdout END ====
[2026-03-13 02:51:02] 2026-03-13 01:51:02,347 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 02:51:02] 2026-03-13 01:51:02,349 [wrapper] pilotpid: 2120903
[2026-03-13 02:51:02] 2026-03-13 01:51:02,352 [wrapper] Pilot exit status: 0
[2026-03-13 02:51:02] 2026-03-13 01:51:02,358 [wrapper] pandaids: 7050533040
[2026-03-13 02:51:02] 2026-03-13 01:51:02,371 [wrapper] cleanup supervisor_pilot 2131290 2120904
[2026-03-13 02:51:02] 2026-03-13 01:51:02,373 [wrapper] Test setup, not cleaning
[2026-03-13 02:51:02] 2026-03-13 01:51:02,375 [wrapper] apfmon messages muted
[2026-03-13 02:51:02] 2026-03-13 01:51:02,378 [wrapper] ==== wrapper stdout END ====
[2026-03-13 02:51:02] 2026-03-13 01:51:02,380 [wrapper] ==== wrapper stderr END ====
[2026-03-13 02:51:02]  *** Error codes and diagnostics ***
[2026-03-13 02:51:02]     "exeErrorCode": 0,
[2026-03-13 02:51:02]     "exeErrorDiag": "",
[2026-03-13 02:51:02]     "pilotErrorCode": 0,
[2026-03-13 02:51:02]     "pilotErrorDiag": "",
[2026-03-13 02:51:02]  *** Listing of results directory ***
[2026-03-13 02:51:02] total 418620
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc    585013 Mar 12 01:10 pilot3.tar.gz
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc      5111 Mar 12 01:57 queuedata.json
[2026-03-13 02:51:02] -rwx------ 1 boinc boinc     36322 Mar 12 01:57 runpilot2-wrapper.sh
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc       100 Mar 13 00:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 02:51:02] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 00:16 run_atlas
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc       105 Mar 13 00:16 job.xml
[2026-03-13 02:51:02] -rw-r--r-- 2 boinc boinc 217043570 Mar 13 00:16 EVNT.48967092._000272.pool.root.1
[2026-03-13 02:51:02] drwxrwx--x 2 boinc boinc      4096 Mar 13 00:16 shared
[2026-03-13 02:51:02] -rw-r--r-- 2 boinc boinc    597530 Mar 13 00:16 input.tar.gz
[2026-03-13 02:51:02] -rw-r--r-- 2 boinc boinc     15845 Mar 13 00:16 start_atlas.sh
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc         0 Mar 13 00:16 boinc_setup_complete
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc      6208 Mar 13 00:16 init_data.xml
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc         0 Mar 13 00:16 boinc_lockfile
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc      2597 Mar 13 00:16 pandaJob.out
[2026-03-13 02:51:02] -rw------- 1 boinc boinc   1006506 Mar 13 00:16 agis_schedconf.cvmfs.json
[2026-03-13 02:51:02] -rw------- 1 boinc boinc   1511578 Mar 13 00:16 agis_ddmendpoints.agis.ALL.json
[2026-03-13 02:51:02] -rw------- 1 boinc boinc       423 Mar 13 00:16 workernode_map.json
[2026-03-13 02:51:02] drwx------ 5 boinc boinc      4096 Mar 13 00:16 pilot3
[2026-03-13 02:51:02] -rw------- 1 boinc boinc 204441560 Mar 13 02:50 HITS.48967094._006103.pool.root.1
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc       530 Mar 13 02:50 boinc_task_state.xml
[2026-03-13 02:51:02] -rw------- 1 boinc boinc        95 Mar 13 02:50 pilot_heartbeat.json
[2026-03-13 02:51:02] -rw------- 1 boinc boinc      1015 Mar 13 02:50 memory_monitor_summary.json
[2026-03-13 02:51:02] -rw------- 1 boinc boinc    310279 Mar 13 02:50 log.48967094._006103.job.log.tgz.1
[2026-03-13 02:51:02] -rw------- 1 boinc boinc      6308 Mar 13 02:50 heartbeat.json
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc      8192 Mar 13 02:50 boinc_mmap_file
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc        27 Mar 13 02:50 wrapper_checkpoint.txt
[2026-03-13 02:51:02] -rw------- 1 boinc boinc       747 Mar 13 02:51 pilotlog.txt
[2026-03-13 02:51:02] -rw------- 1 boinc boinc   1317729 Mar 13 02:51 log.48967094._006103.job.log.1
[2026-03-13 02:51:02] -rw------- 1 boinc boinc       357 Mar 13 02:51 output.list
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc       620 Mar 13 02:51 runtime_log
[2026-03-13 02:51:02] -rw------- 1 boinc boinc   1648640 Mar 13 02:51 result.tar.gz
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc      8916 Mar 13 02:51 runtime_log.err
[2026-03-13 02:51:02] -rw------- 1 boinc boinc       661 Mar 13 02:51 QNZKDmpXjK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmCTlLDmtyXdMo.diag
[2026-03-13 02:51:02] -rw-r--r-- 1 boinc boinc     12451 Mar 13 02:51 stderr.txt
[2026-03-13 02:51:02] HITS file was successfully produced:
[2026-03-13 02:51:02] -rw------- 1 boinc boinc 204441560 Mar 13 02:50 shared/HITS.pool.root.1
[2026-03-13 02:51:02]  *** Contents of shared directory: ***
[2026-03-13 02:51:02] total 413828
[2026-03-13 02:51:02] -rw-r--r-- 2 boinc boinc 217043570 Mar 13 00:16 ATLAS.root_0
[2026-03-13 02:51:02] -rw-r--r-- 2 boinc boinc    597530 Mar 13 00:16 input.tar.gz
[2026-03-13 02:51:02] -rw-r--r-- 2 boinc boinc     15845 Mar 13 00:16 start_atlas.sh
[2026-03-13 02:51:02] -rw------- 1 boinc boinc 204441560 Mar 13 02:50 HITS.pool.root.1
[2026-03-13 02:51:02] -rw------- 1 boinc boinc   1648640 Mar 13 02:51 result.tar.gz
02:51:04 (2116875): run_atlas exited; CPU time 18031.025651
02:51:04 (2116875): called boinc_finish(0)

</stderr_txt>
]]>

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