Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:01:41 (796148): wrapper (7.7.26015): starting
18:01:41 (796148): wrapper: running run_atlas (--nthreads 5)
[2026-03-12 18:01:41] Arguments: --nthreads 5
[2026-03-12 18:01:41] Threads: 5
[2026-03-12 18:01:41] Checking for CVMFS
[2026-03-12 18:01:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 18:01:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 18:01:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 18:01:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 18:01:41] 2.11.0.0 919232 21987 106208 157215 1 188 3817853 4096000 6410 130560 35 51009228 99.997 789288 429 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-12 18:01:41] CVMFS is ok
[2026-03-12 18:01:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 18:01:41] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-12 18:01:41] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-12 18:01:41] Further information can be found at the LHC@home message board.
[2026-03-12 18:01:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 18:01:41] Checking for apptainer binary...
[2026-03-12 18:01:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 18:01:41] Running /usr/bin/apptainer --version
[2026-03-12 18:01:41] apptainer version 1.4.5
[2026-03-12 18:01:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 18:01:41] x32-linux4
[2026-03-12 18:01:41] apptainer works
[2026-03-12 18:01:41] Set ATHENA_PROC_NUMBER=5
[2026-03-12 18:01:41] Set ATHENA_CORE_NUMBER=5
[2026-03-12 18:01:41] Starting ATLAS job with PandaID=7037282943
[2026-03-12 18:01:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 19:40:23]  *** The last 200 lines of the pilot log: ***
[2026-03-12 19:40:23]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-12 19:40:23]  is_altstaged=None
[2026-03-12 19:40:23]  is_tar=False
[2026-03-12 19:40:23]  lfn=log.48937832._000170.job.log.tgz.1
[2026-03-12 19:40:23]  mtime=0
[2026-03-12 19:40:23]  protocol_id=None
[2026-03-12 19:40:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 19:40:23]  replicas=None
[2026-03-12 19:40:23]  scope=mc23_13p6TeV
[2026-03-12 19:40:23]  status=None
[2026-03-12 19:40:23]  status_code=0
[2026-03-12 19:40:23]  storage_token=
[2026-03-12 19:40:23]  surl=/var/lib/boinc-client/slots/7/PanDA_Pilot-7037282943/log.48937832._000170.job.log.tgz.1
[2026-03-12 19:40:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/8a/log.48937832._000170.job.log.tgz.1
[2026-03-12 19:40:23]  workdir=None
[2026-03-12 19:40:23] ]
[2026-03-12 19:40:23] 2026-03-12 23:39:48,970 | INFO     | transferring file log.48937832._000170.job.log.tgz.1 from /var/lib/boinc-client/slots/7/PanDA_Pilot-7037282943/log.48937832._000170.job.log.tgz.1 to /var/lib/boinc
[2026-03-12 19:40:23] 2026-03-12 23:39:48,970 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/7/PanDA_Pilot-7037282943/log.48937832._000170.job.log.tgz.1 /var/lib/boinc-client/slots/7/log.489378
[2026-03-12 19:40:23] 2026-03-12 23:39:49,000 | INFO     | adding to output.list: log.48937832._000170.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/8a/log.48937832._000170.job.log.tg
[2026-03-12 19:40:23] 2026-03-12 23:39:49,001 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 19:40:23] 2026-03-12 23:39:49,001 | INFO     | summary of transferred files:
[2026-03-12 19:40:23] 2026-03-12 23:39:49,001 | INFO     |  -- lfn=log.48937832._000170.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 19:40:23] 2026-03-12 23:39:49,001 | INFO     | stage-out finished correctly
[2026-03-12 19:40:23] 2026-03-12 23:39:49,931 | INFO     | time since job start (5873s) is within the limit (349056.0s)
[2026-03-12 19:40:23] 2026-03-12 23:39:50,515 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 19:40:23] 2026-03-12 23:39:50,906 | INFO     | monitor loop #437: job 0:7037282943 is in state 'finished'
[2026-03-12 19:40:23] 2026-03-12 23:39:50,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,059 | INFO     | job 7037282943 has state=finished
[2026-03-12 19:40:23] 2026-03-12 23:39:51,059 | INFO     | preparing for final server update for job 7037282943 in state='finished'
[2026-03-12 19:40:23] 2026-03-12 23:39:51,242 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,242 | INFO     | reading metadata from: /var/lib/boinc-client/slots/7/PanDA_Pilot-7037282943/jobReport.json
[2026-03-12 19:40:23] 2026-03-12 23:39:51,244 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/7/workernode_map.json
[2026-03-12 19:40:23] 2026-03-12 23:39:51,247 | INFO     | this job has now completed (state=finished)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,247 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,247 | INFO     | log transfer has been attempted: DONE
[2026-03-12 19:40:23] 2026-03-12 23:39:51,247 | INFO     | job 7037282943 has finished - writing final server update
[2026-03-12 19:40:23] 2026-03-12 23:39:51,247 | INFO     | total number of processed events: 400 (read)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,256 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-7037282943/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,256 | INFO     | extracted standard info from prmon json
[2026-03-12 19:40:23] 2026-03-12 23:39:51,256 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 19:40:23] 2026-03-12 23:39:51,256 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 19:40:23] 2026-03-12 23:39:51,257 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 19:40:23] 2026-03-12 23:39:51,257 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 19:40:23] 2026-03-12 23:39:51,261 | INFO     | fitting pss+swap vs Time
[2026-03-12 19:40:23] 2026-03-12 23:39:51,261 | INFO     | sum of square deviations: 218571540.0
[2026-03-12 19:40:23] 2026-03-12 23:39:51,262 | INFO     | sum of deviations: -1945008668.0
[2026-03-12 19:40:23] 2026-03-12 23:39:51,262 | INFO     | mean x: 1773355929.0
[2026-03-12 19:40:23] 2026-03-12 23:39:51,262 | INFO     | mean y: 2384913.7078651683
[2026-03-12 19:40:23] 2026-03-12 23:39:51,262 | INFO     | intersect: 15782996851.356256
[2026-03-12 19:40:23] 2026-03-12 23:39:51,262 | INFO     | chi2: 0.012646586020556778
[2026-03-12 19:40:23] 2026-03-12 23:39:51,262 | INFO     | current memory leak: -8.90 B/s (using 89 data points, chi2=0.01)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,262 | INFO     | could have reported an average CPU frequency of 3838 MHz (7 samples)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,262 | INFO     | ..............................
[2026-03-12 19:40:23] 2026-03-12 23:39:51,262 | INFO     | . Timing measurements:
[2026-03-12 19:40:23] 2026-03-12 23:39:51,262 | INFO     | . get job = 0 s
[2026-03-12 19:40:23] 2026-03-12 23:39:51,263 | INFO     | . initial setup = 6 s
[2026-03-12 19:40:23] 2026-03-12 23:39:51,263 | INFO     | . payload setup = 6 s
[2026-03-12 19:40:23] 2026-03-12 23:39:51,263 | INFO     | . stage-in = 0 s
[2026-03-12 19:40:23] 2026-03-12 23:39:51,263 | INFO     | . payload execution = 5849 s
[2026-03-12 19:40:23] 2026-03-12 23:39:51,263 | INFO     | . stage-out = 0 s
[2026-03-12 19:40:23] 2026-03-12 23:39:51,263 | INFO     | . log creation = 0 s
[2026-03-12 19:40:23] 2026-03-12 23:39:51,263 | INFO     | ..............................
[2026-03-12 19:40:23] 2026-03-12 23:39:51,347 | INFO     | 
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | job summary report
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | --------------------------------------------------
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | PanDA job id: 7037282943
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | task id: 48937832
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | errors: (none)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | pilot state: finished 
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | transexitcode: 0
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | exeerrorcode: 0
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | exeerrordiag: 
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | exitcode: 0
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | exitmsg: OK
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | cpuconsumptiontime: 23353 s
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | nevents: 400
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | neventsw: 0
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | pid: 804566
[2026-03-12 19:40:23] 2026-03-12 23:39:51,348 | INFO     | pgrp: 804566
[2026-03-12 19:40:23] 2026-03-12 23:39:51,349 | INFO     | corecount: 5
[2026-03-12 19:40:23] 2026-03-12 23:39:51,349 | INFO     | event service: False
[2026-03-12 19:40:23] 2026-03-12 23:39:51,349 | INFO     | sizes: {0: 2279805, 1: 2280266, 11: 2280266, 5859: 2307043, 5861: 2316055, 5863: 2316111, 5864: 2316433}
[2026-03-12 19:40:23] 2026-03-12 23:39:51,349 | INFO     | --------------------------------------------------
[2026-03-12 19:40:23] 2026-03-12 23:39:51,349 | INFO     | 
[2026-03-12 19:40:23] 2026-03-12 23:39:51,349 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2026-03-12 19:40:23] 2026-03-12 23:39:51,376 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,377 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,378 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,378 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,378 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,378 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 19:40:23] 2026-03-12 23:39:51,378 | INFO     | job 7037282943 has completed (purged errors)
[2026-03-12 19:40:23] 2026-03-12 23:39:51,378 | INFO     | overall cleanup function is called
[2026-03-12 19:40:23] 2026-03-12 23:39:52,389 | INFO     | --- collectZombieJob: --- 10, [804566]
[2026-03-12 19:40:23] 2026-03-12 23:39:52,389 | INFO     | zombie collector waiting for pid 804566
[2026-03-12 19:40:23] 2026-03-12 23:39:52,389 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 19:40:23] 2026-03-12 23:39:52,389 | INFO     | collected zombie processes
[2026-03-12 19:40:23] 2026-03-12 23:39:52,389 | INFO     | will attempt to kill all subprocesses of pid=804566
[2026-03-12 19:40:23] 2026-03-12 23:39:52,698 | INFO     | process IDs to be killed: [804566] (in reverse order)
[2026-03-12 19:40:23] 2026-03-12 23:39:52,813 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 19:40:23] 2026-03-12 23:39:52,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 19:40:23] 2026-03-12 23:39:52,820 | INFO     | did not find any defunct processes belonging to 804566
[2026-03-12 19:40:23] 2026-03-12 23:39:52,831 | INFO     | did not find any defunct processes belonging to 804566
[2026-03-12 19:40:23] 2026-03-12 23:39:52,831 | INFO     | ready for new job
[2026-03-12 19:40:23] 2026-03-12 23:39:52,831 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 19:40:23] 2026-03-12 23:39:52,832 | INFO     | **************************************
[2026-03-12 19:40:23] 2026-03-12 23:39:52,833 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 19:40:23] 2026-03-12 23:39:52,833 | INFO     | **************************************
[2026-03-12 19:40:23] 2026-03-12 23:39:52,833 | INFO     | 
[2026-03-12 19:40:23] 2026-03-12 23:39:52,834 | INFO     | architecture information:
[2026-03-12 19:40:23] 2026-03-12 23:39:52,838 | INFO     | executing command: cat /etc/os-release
[2026-03-12 19:40:23] 2026-03-12 23:39:52,863 | INFO     | cat /etc/os-release:
[2026-03-12 19:40:23] NAME="CentOS Linux"
[2026-03-12 19:40:23] VERSION="7 (Core)"
[2026-03-12 19:40:23] ID="centos"
[2026-03-12 19:40:23] ID_LIKE="rhel fedora"
[2026-03-12 19:40:23] VERSION_ID="7"
[2026-03-12 19:40:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 19:40:23] ANSI_COLOR="0;31"
[2026-03-12 19:40:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 19:40:23] HOME_URL="https://www.centos.org/"
[2026-03-12 19:40:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 19:40:23] 
[2026-03-12 19:40:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 19:40:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 19:40:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 19:40:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 19:40:23] 
[2026-03-12 19:40:23] 2026-03-12 23:39:52,863 | INFO     | **************************************
[2026-03-12 19:40:23] 2026-03-12 23:39:53,366 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2026-03-12 19:40:23] 2026-03-12 23:39:53,386 | INFO     | sufficient remaining disk space (134053101568 B)
[2026-03-12 19:40:23] 2026-03-12 23:39:53,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 19:40:23] 2026-03-12 23:39:53,386 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 19:40:23] 2026-03-12 23:39:53,386 | INFO     | update_server=False
[2026-03-12 19:40:23] 2026-03-12 23:39:53,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 19:40:23] 2026-03-12 23:39:53,409 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 19:40:23] 2026-03-12 23:39:53,409 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 19:40:23] 2026-03-12 23:39:53,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 19:40:23] 2026-03-12 23:39:53,409 | INFO     | will abort loop
[2026-03-12 19:40:23] 2026-03-12 23:39:53,509 | INFO     | all payload control threads have been joined
[2026-03-12 19:40:23] 2026-03-12 23:39:53,767 | INFO     | all data control threads have been joined
[2026-03-12 19:40:23] 2026-03-12 23:39:54,395 | INFO     | [job] retrieve thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:54,414 | INFO     | [job] job monitor thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:54,514 | INFO     | [payload] control thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:54,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 19:40:23] 2026-03-12 23:39:54,639 | INFO     | [job] validate thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:54,772 | INFO     | [data] control thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:54,822 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:54,857 | INFO     | [payload] failed_post thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:54,996 | INFO     | all job control threads have been joined
[2026-03-12 19:40:23] 2026-03-12 23:39:55,026 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:55,356 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:55,393 | INFO     | [data] copytool_in thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:55,888 | INFO     | [payload] validate_post thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:56,001 | INFO     | [job] control thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:56,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 19:40:23] 2026-03-12 23:39:56,627 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 19:40:23] 2026-03-12 23:39:56,630 | INFO     | [data] copytool_out thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:39:57,369 | INFO     | [job] queue monitor thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:40:00,632 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:40:04,376 | INFO     | job.realtimelogging is not enabled
[2026-03-12 19:40:23] 2026-03-12 23:40:05,381 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 19:40:23] 2026-03-12 23:40:05,769 | INFO     | [monitor] cgroup control has ended
[2026-03-12 19:40:23] 2026-03-12 23:40:06,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140643145246528)>', '<ExcThread(monitor, started 140642638350080)>']
[2026-03-12 19:40:23] 2026-03-12 23:40:11,883 | INFO     | all workflow threads have been joined
[2026-03-12 19:40:23] 2026-03-12 23:40:11,883 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 19:40:23] 2026-03-12 23:40:11,883 | INFO     | traces error code: 0
[2026-03-12 19:40:23] 2026-03-12 23:40:11,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 19:40:23] 2026-03-12 23:40:23,278 | INFO     | PID=799992 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 19:40:23] 2026-03-12 23:40:23,278 | INFO     | .. there are 8 such processes running
[2026-03-12 19:40:23] 2026-03-12 23:40:23,279 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 19:40:23] 2026-03-12 23:40:23,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 19:40:23] 2026-03-12 23:40:23,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 19:40:23] 2026-03-12 23:40:23,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 19:40:23] 2026-03-12 23:40:23,279 | INFO     | [monitor] control thread has ended
[2026-03-12 19:40:23] 2026-03-12 23:40:23,406 [wrapper] ==== pilot stdout END ====
[2026-03-12 19:40:23] 2026-03-12 23:40:23,409 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 19:40:23] 2026-03-12 23:40:23,418 [wrapper] pilotpid: 799992
[2026-03-12 19:40:23] 2026-03-12 23:40:23,423 [wrapper] Pilot exit status: 0
[2026-03-12 19:40:23] 2026-03-12 23:40:23,441 [wrapper] pandaids: 7037282943
[2026-03-12 19:40:23] 2026-03-12 23:40:23,513 [wrapper] cleanup supervisor_pilot  877993 799993
[2026-03-12 19:40:23] 2026-03-12 23:40:23,520 [wrapper] Test setup, not cleaning
[2026-03-12 19:40:23] 2026-03-12 23:40:23,526 [wrapper] apfmon messages muted
[2026-03-12 19:40:23] 2026-03-12 23:40:23,532 [wrapper] ==== wrapper stdout END ====
[2026-03-12 19:40:23] 2026-03-12 23:40:23,537 [wrapper] ==== wrapper stderr END ====
[2026-03-12 19:40:23]  *** Error codes and diagnostics ***
[2026-03-12 19:40:23]     "exeErrorCode": 0,
[2026-03-12 19:40:23]     "exeErrorDiag": "",
[2026-03-12 19:40:23]     "pilotErrorCode": 0,
[2026-03-12 19:40:23]     "pilotErrorDiag": "",
[2026-03-12 19:40:23]  *** Listing of results directory ***
[2026-03-12 19:40:23] total 437620
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc    584627 Mar  4 01:10 pilot3.tar.gz
[2026-03-12 19:40:23] -rwx------ 1 boinc boinc     36322 Mar  4 01:13 runpilot2-wrapper.sh
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc      5111 Mar  4 01:14 queuedata.json
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc       100 Mar 12 18:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 19:40:23] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 18:01 run_atlas
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc       105 Mar 12 18:01 job.xml
[2026-03-12 19:40:23] -rw-r--r-- 2 boinc boinc 262856308 Mar 12 18:01 EVNT.48564794._000007.pool.root.1
[2026-03-12 19:40:23] -rw-r--r-- 2 boinc boinc     15845 Mar 12 18:01 start_atlas.sh
[2026-03-12 19:40:23] drwxrwx--x 2 boinc boinc      4096 Mar 12 18:01 shared
[2026-03-12 19:40:23] -rw-r--r-- 2 boinc boinc    597946 Mar 12 18:01 input.tar.gz
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc      9742 Mar 12 18:01 init_data.xml
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc         0 Mar 12 18:01 boinc_setup_complete
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc         0 Mar 12 18:01 boinc_lockfile
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc      2544 Mar 12 18:01 pandaJob.out
[2026-03-12 19:40:23] -rw------- 1 boinc boinc   1006514 Mar 12 18:01 agis_schedconf.cvmfs.json
[2026-03-12 19:40:23] -rw------- 1 boinc boinc   1511578 Mar 12 18:01 agis_ddmendpoints.agis.ALL.json
[2026-03-12 19:40:23] -rw------- 1 boinc boinc       414 Mar 12 18:01 workernode_map.json
[2026-03-12 19:40:23] drwx------ 5 boinc boinc      4096 Mar 12 18:01 pilot3
[2026-03-12 19:40:23] -rw------- 1 boinc boinc 178993731 Mar 12 19:39 HITS.48937832._000170.pool.root.1
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc       529 Mar 12 19:39 boinc_task_state.xml
[2026-03-12 19:40:23] -rw------- 1 boinc boinc        95 Mar 12 19:39 pilot_heartbeat.json
[2026-03-12 19:40:23] -rw------- 1 boinc boinc      1023 Mar 12 19:39 memory_monitor_summary.json
[2026-03-12 19:40:23] -rw------- 1 boinc boinc    307340 Mar 12 19:39 log.48937832._000170.job.log.tgz.1
[2026-03-12 19:40:23] -rw------- 1 boinc boinc      6279 Mar 12 19:39 heartbeat.json
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc      8192 Mar 12 19:40 boinc_mmap_file
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc        27 Mar 12 19:40 wrapper_checkpoint.txt
[2026-03-12 19:40:23] -rw------- 1 boinc boinc       821 Mar 12 19:40 pilotlog.txt
[2026-03-12 19:40:23] -rw------- 1 boinc boinc    858353 Mar 12 19:40 log.48937832._000170.job.log.1
[2026-03-12 19:40:23] -rw------- 1 boinc boinc       357 Mar 12 19:40 output.list
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc       620 Mar 12 19:40 runtime_log
[2026-03-12 19:40:23] -rw------- 1 boinc boinc   1187840 Mar 12 19:40 result.tar.gz
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc      8891 Mar 12 19:40 runtime_log.err
[2026-03-12 19:40:23] -rw------- 1 boinc boinc       644 Mar 12 19:40 mMcNDmlfuH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmdeHLDm6hsqin.diag
[2026-03-12 19:40:23] -rw-r--r-- 1 boinc boinc     21495 Mar 12 19:40 stderr.txt
[2026-03-12 19:40:23] HITS file was successfully produced:
[2026-03-12 19:40:23] -rw------- 1 boinc boinc 178993731 Mar 12 19:39 shared/HITS.pool.root.1
[2026-03-12 19:40:23]  *** Contents of shared directory: ***
[2026-03-12 19:40:23] total 433264
[2026-03-12 19:40:23] -rw-r--r-- 2 boinc boinc 262856308 Mar 12 18:01 ATLAS.root_0
[2026-03-12 19:40:23] -rw-r--r-- 2 boinc boinc     15845 Mar 12 18:01 start_atlas.sh
[2026-03-12 19:40:23] -rw-r--r-- 2 boinc boinc    597946 Mar 12 18:01 input.tar.gz
[2026-03-12 19:40:23] -rw------- 1 boinc boinc 178993731 Mar 12 19:39 HITS.pool.root.1
[2026-03-12 19:40:23] -rw------- 1 boinc boinc   1187840 Mar 12 19:40 result.tar.gz
19:40:24 (796148): run_atlas exited; CPU time 23440.650392
19:40:24 (796148): called boinc_finish(0)

</stderr_txt>
]]>

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