Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:50:52 (2985073): wrapper (7.7.26015): starting
11:50:52 (2985073): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 11:50:52] Arguments: --nthreads 3
[2026-03-13 11:50:52] Threads: 3
[2026-03-13 11:50:52] Checking for CVMFS
[2026-03-13 11:50:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 11:50:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 11:50:53] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 11:50:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 11:50:53] 2.9.2.0 3056 15820 88044 157236 3 50 24997229 36864001 0 130560 0 6655888 99.983 596976 13079 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 11:50:53] CVMFS is ok
[2026-03-13 11:50:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 11:50:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 11:50:53] Further information can be found at the LHC@home message board.
[2026-03-13 11:50:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 11:50:53] Checking for apptainer binary...
[2026-03-13 11:50:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 11:50:53] Running /usr/bin/apptainer --version
[2026-03-13 11:50:53] apptainer version 1.4.1-1.1
[2026-03-13 11:50:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 11:50:53] cosA127a
[2026-03-13 11:50:53] apptainer works
[2026-03-13 11:50:53] Set ATHENA_PROC_NUMBER=3
[2026-03-13 11:50:53] Set ATHENA_CORE_NUMBER=3
[2026-03-13 11:50:53] Starting ATLAS job with PandaID=7037283073
[2026-03-13 11:50:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 12:59:18]  *** The last 200 lines of the pilot log: ***
[2026-03-13 12:59:18] 2026-03-13 11:58:46,842 | WARNING  | process 2993559 can no longer be monitored (due to stat problems) - aborting
[2026-03-13 12:59:18] 2026-03-13 11:58:46,883 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 12:59:18] 2026-03-13 11:58:46,935 | INFO     | number of running child processes to parent process 2993559: 1
[2026-03-13 12:59:18] 2026-03-13 11:58:46,935 | INFO     | maximum number of monitored processes: 6
[2026-03-13 12:59:18] 2026-03-13 11:58:46,935 | INFO     | aborting job monitoring since job object (job id=7037283073) has expired
[2026-03-13 12:59:18] 2026-03-13 11:58:47,603 | INFO     | --- collectZombieJob: --- 10, [2993559]
[2026-03-13 12:59:18] 2026-03-13 11:58:47,603 | INFO     | zombie collector waiting for pid 2993559
[2026-03-13 12:59:18] 2026-03-13 11:58:47,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 12:59:18] 2026-03-13 11:58:47,603 | INFO     | collected zombie processes
[2026-03-13 12:59:18] 2026-03-13 11:58:47,603 | INFO     | will attempt to kill all subprocesses of pid=2993559
[2026-03-13 12:59:18] 2026-03-13 11:58:47,661 | INFO     | process IDs to be killed: [2993559] (in reverse order)
[2026-03-13 12:59:18] 2026-03-13 11:58:47,690 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 12:59:18] 2026-03-13 11:58:47,690 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 12:59:18] 2026-03-13 11:58:47,692 | INFO     | did not find any defunct processes belonging to 2993559
[2026-03-13 12:59:18] 2026-03-13 11:58:47,694 | INFO     | did not find any defunct processes belonging to 2993559
[2026-03-13 12:59:18] 2026-03-13 11:58:47,694 | INFO     | ready for new job
[2026-03-13 12:59:18] 2026-03-13 11:58:47,694 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 12:59:18] 2026-03-13 11:58:47,695 | INFO     | **************************************
[2026-03-13 12:59:18] 2026-03-13 11:58:47,695 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 12:59:18] 2026-03-13 11:58:47,695 | INFO     | **************************************
[2026-03-13 12:59:18] 2026-03-13 11:58:47,695 | INFO     | 
[2026-03-13 12:59:18] 2026-03-13 11:58:47,695 | INFO     | architecture information:
[2026-03-13 12:59:18] 2026-03-13 11:58:47,695 | INFO     | executing command: cat /etc/os-release
[2026-03-13 12:59:18] 2026-03-13 11:58:47,704 | INFO     | cat /etc/os-release:
[2026-03-13 12:59:18] NAME="CentOS Linux"
[2026-03-13 12:59:18] VERSION="7 (Core)"
[2026-03-13 12:59:18] ID="centos"
[2026-03-13 12:59:18] ID_LIKE="rhel fedora"
[2026-03-13 12:59:18] VERSION_ID="7"
[2026-03-13 12:59:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 12:59:18] ANSI_COLOR="0;31"
[2026-03-13 12:59:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 12:59:18] HOME_URL="https://www.centos.org/"
[2026-03-13 12:59:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 12:59:18] 
[2026-03-13 12:59:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 12:59:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 12:59:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 12:59:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 12:59:18] 
[2026-03-13 12:59:18] 2026-03-13 11:58:47,704 | INFO     | **************************************
[2026-03-13 12:59:18] 2026-03-13 11:58:48,208 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 12:59:18] 2026-03-13 11:58:48,221 | INFO     | sufficient remaining disk space (330895982592 B)
[2026-03-13 12:59:18] 2026-03-13 11:58:48,221 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 12:59:18] 2026-03-13 11:58:48,221 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 12:59:18] 2026-03-13 11:58:48,221 | INFO     | update_server=False
[2026-03-13 12:59:18] 2026-03-13 11:58:48,221 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 12:59:18] 2026-03-13 11:58:48,221 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 12:59:18] 2026-03-13 11:58:48,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 12:59:18] 2026-03-13 11:58:48,222 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 12:59:18] 2026-03-13 11:58:48,222 | INFO     | aborting loop
[2026-03-13 12:59:18] 2026-03-13 11:58:48,697 | INFO     | all data control threads have been joined
[2026-03-13 12:59:18] 2026-03-13 11:58:49,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 12:59:18] 2026-03-13 11:58:49,219 | INFO     | all payload control threads have been joined
[2026-03-13 12:59:18] 2026-03-13 11:58:49,227 | INFO     | [job] queue monitor thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:49,227 | INFO     | [job] retrieve thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:49,228 | INFO     | [job] job monitor thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:49,597 | INFO     | all job control threads have been joined
[2026-03-13 12:59:18] 2026-03-13 11:58:49,597 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:49,703 | INFO     | [data] control thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:49,825 | INFO     | [payload] validate_post thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:49,935 | INFO     | [job] validate thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:50,085 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:50,090 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:50,225 | INFO     | [payload] control thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:50,278 | INFO     | [data] copytool_in thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:50,368 | INFO     | [payload] failed_post thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:50,602 | INFO     | [job] control thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:51,061 | INFO     | [data] copytool_out thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:52,229 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:58:52,292 | INFO     | job.realtimelogging is not enabled
[2026-03-13 12:59:18] 2026-03-13 11:58:53,296 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 12:59:18] 2026-03-13 11:59:07,536 | INFO     | [monitor] cgroup control has ended
[2026-03-13 12:59:18] 2026-03-13 11:59:07,993 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140284895876928)>', '<ExcThread(monitor, started 140284411234048)>']
[2026-03-13 12:59:18] 2026-03-13 11:59:13,018 | INFO     | all workflow threads have been joined
[2026-03-13 12:59:18] 2026-03-13 11:59:13,019 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 12:59:18] 2026-03-13 11:59:13,020 | INFO     | traces error code: 0
[2026-03-13 12:59:18] 2026-03-13 11:59:13,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 12:59:18] 2026-03-13 11:59:18,299 | INFO     | PID=2989121 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 12:59:18] 2026-03-13 11:59:18,300 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 12:59:18] 2026-03-13 11:59:18,300 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 12:59:18] 2026-03-13 11:59:18,300 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 12:59:18] 2026-03-13 11:59:18,300 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 12:59:18] 2026-03-13 11:59:18,300 | INFO     | [monitor] control thread has ended
[2026-03-13 12:59:18] 2026-03-13 11:59:18,347 [wrapper] ==== pilot stdout END ====
[2026-03-13 12:59:18] 2026-03-13 11:59:18,350 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 12:59:18] 2026-03-13 11:59:18,352 [wrapper] pilotpid: 2989121
[2026-03-13 12:59:18] 2026-03-13 11:59:18,355 [wrapper] Pilot exit status: 0
[2026-03-13 12:59:18] 2026-03-13 11:59:18,362 [wrapper] pandaids: 7037283073
[2026-03-13 12:59:18] 2026-03-13 11:59:18,381 [wrapper] cleanup supervisor_pilot 3001032 2989122
[2026-03-13 12:59:18] 2026-03-13 11:59:18,383 [wrapper] Test setup, not cleaning
[2026-03-13 12:59:18] 2026-03-13 11:59:18,385 [wrapper] apfmon messages muted
[2026-03-13 12:59:18] 2026-03-13 11:59:18,388 [wrapper] ==== wrapper stdout END ====
[2026-03-13 12:59:18] 2026-03-13 11:59:18,390 [wrapper] ==== wrapper stderr END ====
[2026-03-13 12:59:18]  *** Error codes and diagnostics ***
[2026-03-13 12:59:18]     "exeErrorCode": 0,
[2026-03-13 12:59:18]     "exeErrorDiag": "",
[2026-03-13 12:59:18]     "pilotErrorCode": 0,
[2026-03-13 12:59:18]     "pilotErrorDiag": "",
[2026-03-13 12:59:18]  *** Listing of results directory ***
[2026-03-13 12:59:18] total 290832
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc    584627 Mar  4 07:10 pilot3.tar.gz
[2026-03-13 12:59:18] -rwx------ 1 boinc boinc     36322 Mar  4 07:13 runpilot2-wrapper.sh
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc      5111 Mar  4 07:14 queuedata.json
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc       100 Mar 13 11:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 12:59:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 11:50 run_atlas
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc       105 Mar 13 11:50 job.xml
[2026-03-13 12:59:18] -rw-r--r-- 2 boinc boinc 115895660 Mar 13 11:50 EVNT.48564794._000009.pool.root.1
[2026-03-13 12:59:18] -rw-r--r-- 2 boinc boinc    597950 Mar 13 11:50 input.tar.gz
[2026-03-13 12:59:18] -rw-r--r-- 2 boinc boinc     15845 Mar 13 11:50 start_atlas.sh
[2026-03-13 12:59:18] drwxrwx--x 2 boinc boinc      4096 Mar 13 11:50 shared
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc         0 Mar 13 11:50 boinc_setup_complete
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc      6440 Mar 13 11:50 init_data.xml
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc         0 Mar 13 11:50 boinc_lockfile
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc      2544 Mar 13 11:50 pandaJob.out
[2026-03-13 12:59:18] -rw------- 1 boinc boinc   1006495 Mar 13 11:50 agis_schedconf.cvmfs.json
[2026-03-13 12:59:18] -rw------- 1 boinc boinc   1511578 Mar 13 11:50 agis_ddmendpoints.agis.ALL.json
[2026-03-13 12:59:18] -rw------- 1 boinc boinc       419 Mar 13 11:51 workernode_map.json
[2026-03-13 12:59:18] drwx------ 5 boinc boinc      4096 Mar 13 11:51 pilot3
[2026-03-13 12:59:18] -rw------- 1 boinc boinc        95 Mar 13 12:58 pilot_heartbeat.json
[2026-03-13 12:59:18] -rw------- 1 boinc boinc 176317832 Mar 13 12:58 HITS.48937832._000207.pool.root.1
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc       529 Mar 13 12:58 boinc_task_state.xml
[2026-03-13 12:59:18] -rw------- 1 boinc boinc      1020 Mar 13 12:58 memory_monitor_summary.json
[2026-03-13 12:59:18] -rw------- 1 boinc boinc    234139 Mar 13 12:58 log.48937832._000207.job.log.tgz.1
[2026-03-13 12:59:18] -rw------- 1 boinc boinc      6301 Mar 13 12:58 heartbeat.json
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc      8192 Mar 13 12:58 boinc_mmap_file
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc        27 Mar 13 12:58 wrapper_checkpoint.txt
[2026-03-13 12:59:18] -rw------- 1 boinc boinc       747 Mar 13 12:59 pilotlog.txt
[2026-03-13 12:59:18] -rw------- 1 boinc boinc    605877 Mar 13 12:59 log.48937832._000207.job.log.1
[2026-03-13 12:59:18] -rw------- 1 boinc boinc       357 Mar 13 12:59 output.list
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc       620 Mar 13 12:59 runtime_log
[2026-03-13 12:59:18] -rw------- 1 boinc boinc    860160 Mar 13 12:59 result.tar.gz
[2026-03-13 12:59:18] -rw------- 1 boinc boinc       659 Mar 13 12:59 gafKDmmfuH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmCfHLDmS7wd4m.diag
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc      8906 Mar 13 12:59 runtime_log.err
[2026-03-13 12:59:18] -rw-r--r-- 1 boinc boinc     11337 Mar 13 12:59 stderr.txt
[2026-03-13 12:59:18] HITS file was successfully produced:
[2026-03-13 12:59:18] -rw------- 1 boinc boinc 176317832 Mar 13 12:58 shared/HITS.pool.root.1
[2026-03-13 12:59:18]  *** Contents of shared directory: ***
[2026-03-13 12:59:18] total 286812
[2026-03-13 12:59:18] -rw-r--r-- 2 boinc boinc 115895660 Mar 13 11:50 ATLAS.root_0
[2026-03-13 12:59:18] -rw-r--r-- 2 boinc boinc    597950 Mar 13 11:50 input.tar.gz
[2026-03-13 12:59:18] -rw-r--r-- 2 boinc boinc     15845 Mar 13 11:50 start_atlas.sh
[2026-03-13 12:59:18] -rw------- 1 boinc boinc 176317832 Mar 13 12:58 HITS.pool.root.1
[2026-03-13 12:59:18] -rw------- 1 boinc boinc    860160 Mar 13 12:59 result.tar.gz
12:59:19 (2985073): run_atlas exited; CPU time 11509.283781
12:59:19 (2985073): called boinc_finish(0)

</stderr_txt>
]]>

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