Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:04:23 (697673): wrapper (7.7.26015): starting
09:04:23 (697673): wrapper: running run_atlas (--nthreads 4)
[2026-03-16 09:04:23] Arguments: --nthreads 4
[2026-03-16 09:04:23] Threads: 4
[2026-03-16 09:04:23] Checking for CVMFS
[2026-03-16 09:04:23] No cvmfs_config command found, will try listing directly
[2026-03-16 09:04:23] CVMFS is ok
[2026-03-16 09:04:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-16 09:04:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-16 09:04:23] Further information can be found at the LHC@home message board.
[2026-03-16 09:04:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-16 09:04:23] Checking for apptainer binary...
[2026-03-16 09:04:23] which: no apptainer in ((null))
[2026-03-16 09:04:23] apptainer is not installed, using version from CVMFS
[2026-03-16 09:04:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-16 09:04:23] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-03-16 09:04:23] apptainer works
[2026-03-16 09:04:23] Set ATHENA_PROC_NUMBER=4
[2026-03-16 09:04:23] Set ATHENA_CORE_NUMBER=4
[2026-03-16 09:04:23] Starting ATLAS job with PandaID=7042433441
[2026-03-16 09:04:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-16 11:37:05]  *** The last 200 lines of the pilot log: ***
[2026-03-16 11:37:05] 2026-03-16 10:36:02,827 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1358220/.job.ad'
[2026-03-16 11:37:05] 2026-03-16 10:36:02,828 | INFO     | total number of processed events: 400 (read)
[2026-03-16 11:37:05] 2026-03-16 10:36:02,856 | INFO     | using path: /var/lib/boinc/var/slot72/slots/0/PanDA_Pilot-7042433441/memory_monitor_summary.json (trf name=prmon)
[2026-03-16 11:37:05] 2026-03-16 10:36:02,857 | INFO     | extracted standard info from prmon json
[2026-03-16 11:37:05] 2026-03-16 10:36:02,857 | INFO     | extracted standard memory fields from prmon json
[2026-03-16 11:37:05] 2026-03-16 10:36:02,857 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-16 11:37:05] 2026-03-16 10:36:02,858 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-16 11:37:05] 2026-03-16 10:36:02,858 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-16 11:37:05] 2026-03-16 10:36:02,862 | INFO     | fitting pss+swap vs Time
[2026-03-16 11:37:05] 2026-03-16 10:36:02,862 | INFO     | sum of square deviations: 1025693650.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,863 | INFO     | sum of deviations: 12176973720.000002
[2026-03-16 11:37:05] 2026-03-16 10:36:02,863 | INFO     | mean x: 1773652827.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,863 | INFO     | mean y: 2275465.8187919464
[2026-03-16 11:37:05] 2026-03-16 10:36:02,863 | INFO     | intersect: -21054424907.419075
[2026-03-16 11:37:05] 2026-03-16 10:36:02,864 | INFO     | chi2: 2.149740040821586
[2026-03-16 11:37:05] 2026-03-16 10:36:02,864 | INFO     | sum of square deviations: 925859220.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,865 | INFO     | sum of deviations: 20786183344.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,865 | INFO     | mean x: 1773652674.5
[2026-03-16 11:37:05] 2026-03-16 10:36:02,865 | INFO     | mean y: 2288230.4305555555
[2026-03-16 11:37:05] 2026-03-16 10:36:02,865 | INFO     | intersect: -39817447734.107285
[2026-03-16 11:37:05] 2026-03-16 10:36:02,865 | INFO     | chi2: 1.3453155769723484
[2026-03-16 11:37:05] 2026-03-16 10:36:02,866 | INFO     | current chi2=1.3453155769723484 (change=37.41961579418707 %)
[2026-03-16 11:37:05] 2026-03-16 10:36:02,866 | INFO     | sum of square deviations: 832722590.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,867 | INFO     | sum of deviations: 19924800514.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,867 | INFO     | mean x: 1773652522.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,867 | INFO     | mean y: 2286819.496402878
[2026-03-16 11:37:05] 2026-03-16 10:36:02,867 | INFO     | intersect: -42436423390.11013
[2026-03-16 11:37:05] 2026-03-16 10:36:02,867 | INFO     | chi2: 1.3464091362714008
[2026-03-16 11:37:05] 2026-03-16 10:36:02,867 | INFO     | current chi2=1.3464091362714008 (change=-0.08128645187573656 %)
[2026-03-16 11:37:05] 2026-03-16 10:36:02,867 | INFO     | right removable region: 138
[2026-03-16 11:37:05] 2026-03-16 10:36:02,868 | INFO     | sum of square deviations: 925859220.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,868 | INFO     | sum of deviations: -6583485664.5
[2026-03-16 11:37:05] 2026-03-16 10:36:02,869 | INFO     | mean x: 1773652979.5
[2026-03-16 11:37:05] 2026-03-16 10:36:02,869 | INFO     | mean y: 2303631.7708333335
[2026-03-16 11:37:05] 2026-03-16 10:36:02,869 | INFO     | intersect: 12614176702.85821
[2026-03-16 11:37:05] 2026-03-16 10:36:02,869 | INFO     | chi2: 0.8337576428683806
[2026-03-16 11:37:05] 2026-03-16 10:36:02,869 | INFO     | current chi2=0.8337576428683806 (change=61.21588531468504 %)
[2026-03-16 11:37:05] 2026-03-16 10:36:02,869 | INFO     | sum of square deviations: 832722590.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,870 | INFO     | sum of deviations: -7100764475.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,870 | INFO     | mean x: 1773653132.0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,870 | INFO     | mean y: 2304462.4100719425
[2026-03-16 11:37:05] 2026-03-16 10:36:02,870 | INFO     | intersect: 15126540674.950056
[2026-03-16 11:37:05] 2026-03-16 10:36:02,871 | INFO     | chi2: 0.8314143795873261
[2026-03-16 11:37:05] 2026-03-16 10:36:02,871 | INFO     | current chi2=0.8314143795873261 (change=0.2810484918606511 %)
[2026-03-16 11:37:05] 2026-03-16 10:36:02,871 | INFO     | left removable region: 20
[2026-03-16 11:37:05] 2026-03-16 10:36:02,871 | INFO     | sum of square deviations: 509440249.5
[2026-03-16 11:37:05] 2026-03-16 10:36:02,872 | INFO     | sum of deviations: 714638058.0000001
[2026-03-16 11:37:05] 2026-03-16 10:36:02,872 | INFO     | mean x: 1773653101.5
[2026-03-16 11:37:05] 2026-03-16 10:36:02,872 | INFO     | mean y: 2320252.2881355933
[2026-03-16 11:37:05] 2026-03-16 10:36:02,872 | INFO     | intersect: -2485743871.55302
[2026-03-16 11:37:05] 2026-03-16 10:36:02,872 | INFO     | chi2: 6.1557646520053e-05
[2026-03-16 11:37:05] 2026-03-16 10:36:02,873 | INFO     | current memory leak: 1.40 B/s (using 118 data points, chi2=0.00)
[2026-03-16 11:37:05] 2026-03-16 10:36:02,873 | INFO     | could have reported an average CPU frequency of 2732 MHz (9 samples)
[2026-03-16 11:37:05] 2026-03-16 10:36:02,873 | INFO     | ..............................
[2026-03-16 11:37:05] 2026-03-16 10:36:02,873 | INFO     | . Timing measurements:
[2026-03-16 11:37:05] 2026-03-16 10:36:02,873 | INFO     | . get job = 0 s
[2026-03-16 11:37:05] 2026-03-16 10:36:02,874 | INFO     | . initial setup = 8 s
[2026-03-16 11:37:05] 2026-03-16 10:36:02,874 | INFO     | . payload setup = 9 s
[2026-03-16 11:37:05] 2026-03-16 10:36:02,874 | INFO     | . stage-in = 0 s
[2026-03-16 11:37:05] 2026-03-16 10:36:02,874 | INFO     | . payload execution = 9052 s
[2026-03-16 11:37:05] 2026-03-16 10:36:02,874 | INFO     | . stage-out = 0 s
[2026-03-16 11:37:05] 2026-03-16 10:36:02,874 | INFO     | . log creation = 0 s
[2026-03-16 11:37:05] 2026-03-16 10:36:02,874 | INFO     | ..............................
[2026-03-16 11:37:05] 2026-03-16 10:36:02,966 | INFO     | 
[2026-03-16 11:37:05] 2026-03-16 10:36:02,967 | INFO     | job summary report
[2026-03-16 11:37:05] 2026-03-16 10:36:02,967 | INFO     | --------------------------------------------------
[2026-03-16 11:37:05] 2026-03-16 10:36:02,967 | INFO     | PanDA job id: 7042433441
[2026-03-16 11:37:05] 2026-03-16 10:36:02,967 | INFO     | task id: 48955006
[2026-03-16 11:37:05] 2026-03-16 10:36:02,967 | INFO     | errors: (none)
[2026-03-16 11:37:05] 2026-03-16 10:36:02,967 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-16 11:37:05] 2026-03-16 10:36:02,967 | INFO     | pilot state: finished 
[2026-03-16 11:37:05] 2026-03-16 10:36:02,967 | INFO     | transexitcode: 0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | exeerrorcode: 0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | exeerrordiag: 
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | exitcode: 0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | exitmsg: OK
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | cpuconsumptiontime: 34174 s
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | nevents: 400
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | neventsw: 0
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | pid: 718458
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | pgrp: 718458
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | corecount: 4
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | event service: False
[2026-03-16 11:37:05] 2026-03-16 10:36:02,968 | INFO     | sizes: {0: 2279808, 1: 2280269, 11: 2280269, 9066: 2308808, 9067: 2318086}
[2026-03-16 11:37:05] 2026-03-16 10:36:02,969 | INFO     | --------------------------------------------------
[2026-03-16 11:37:05] 2026-03-16 10:36:02,969 | INFO     | 
[2026-03-16 11:37:05] 2026-03-16 10:36:02,969 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot72/slots/0
[2026-03-16 11:37:05] 2026-03-16 10:36:03,012 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,013 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,013 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,013 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,013 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,014 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,014 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,014 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,014 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,014 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,014 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,014 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,014 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,014 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,014 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,015 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,015 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,015 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-16 11:37:05] 2026-03-16 10:36:03,015 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,015 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-16 11:37:05] 2026-03-16 10:36:03,015 | INFO     | job 7042433441 has completed (purged errors)
[2026-03-16 11:37:05] 2026-03-16 10:36:03,016 | INFO     | overall cleanup function is called
[2026-03-16 11:37:05] 2026-03-16 10:36:04,004 | INFO     | PID=705133 has CPU usage=24.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-16 11:37:05] 2026-03-16 10:36:04,004 | INFO     | .. there are 24 such processes running
[2026-03-16 11:37:05] 2026-03-16 10:36:04,025 | INFO     | --- collectZombieJob: --- 10, [718458]
[2026-03-16 11:37:05] 2026-03-16 10:36:04,025 | INFO     | zombie collector waiting for pid 718458
[2026-03-16 11:37:05] 2026-03-16 10:36:04,026 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-16 11:37:05] 2026-03-16 10:36:04,026 | INFO     | collected zombie processes
[2026-03-16 11:37:05] 2026-03-16 10:36:04,026 | INFO     | will attempt to kill all subprocesses of pid=718458
[2026-03-16 11:37:05] 2026-03-16 10:36:04,842 | INFO     | process IDs to be killed: [718458] (in reverse order)
[2026-03-16 11:37:05] 2026-03-16 10:36:05,177 | WARNING  | found no corresponding commands to process id(s)
[2026-03-16 11:37:05] 2026-03-16 10:36:05,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-16 11:37:05] 2026-03-16 10:36:05,207 | INFO     | did not find any defunct processes belonging to 718458
[2026-03-16 11:37:05] 2026-03-16 10:36:05,233 | INFO     | did not find any defunct processes belonging to 718458
[2026-03-16 11:37:05] 2026-03-16 10:36:05,234 | INFO     | ready for new job
[2026-03-16 11:37:05] 2026-03-16 10:36:05,234 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-16 11:37:05] 2026-03-16 10:36:05,236 | INFO     | **************************************
[2026-03-16 11:37:05] 2026-03-16 10:36:05,237 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-16 11:37:05] 2026-03-16 10:36:05,237 | INFO     | **************************************
[2026-03-16 11:37:05] 2026-03-16 10:36:05,237 | INFO     | 
[2026-03-16 11:37:05] 2026-03-16 10:36:05,245 | INFO     | architecture information:
[2026-03-16 11:37:05] 2026-03-16 10:36:05,245 | INFO     | executing command: cat /etc/os-release
[2026-03-16 11:37:05] 2026-03-16 10:36:05,265 | INFO     | cat /etc/os-release:
[2026-03-16 11:37:05] NAME="CentOS Linux"
[2026-03-16 11:37:05] VERSION="7 (Core)"
[2026-03-16 11:37:05] ID="centos"
[2026-03-16 11:37:05] ID_LIKE="rhel fedora"
[2026-03-16 11:37:05] VERSION_ID="7"
[2026-03-16 11:37:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-16 11:37:05] ANSI_COLOR="0;31"
[2026-03-16 11:37:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-16 11:37:05] HOME_URL="https://www.centos.org/"
[2026-03-16 11:37:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-16 11:37:05] 
[2026-03-16 11:37:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-16 11:37:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-16 11:37:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-16 11:37:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-16 11:37:05] 
[2026-03-16 11:37:05] 2026-03-16 10:36:05,265 | INFO     | **************************************
[2026-03-16 11:37:05] 2026-03-16 10:36:05,768 | INFO     | executing command: df -mP /var/lib/boinc/var/slot72/slots/0
[2026-03-16 11:37:05] 2026-03-16 10:36:05,794 | INFO     | sufficient remaining disk space (128634060800 B)
[2026-03-16 11:37:05] 2026-03-16 10:36:05,794 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-16 11:37:05] 2026-03-16 10:36:05,794 | INFO     | current server update state: UPDATING_FINAL
[2026-03-16 11:37:05] 2026-03-16 10:36:05,794 | INFO     | update_server=False
[2026-03-16 11:37:05] 2026-03-16 10:36:05,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-16 11:37:05] 2026-03-16 10:36:05,795 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-16 11:37:05] 2026-03-16 10:36:06,072 | INFO     | all payload control threads have been joined
[2026-03-16 11:37:05] 2026-03-16 10:36:06,165 | INFO     | all data control threads have been joined
[2026-03-16 11:37:05] 2026-03-16 10:36:06,560 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-16 11:37:05] 2026-03-16 10:36:06,560 | INFO     | aborting loop
[2026-03-16 11:37:05] 2026-03-16 10:36:06,800 | INFO     | [job] retrieve thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:06,898 | INFO     | [payload] failed_post thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,077 | INFO     | [payload] control thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,150 | INFO     | [payload] execute_payloads thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,170 | INFO     | [data] control thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,322 | INFO     | all job control threads have been joined
[2026-03-16 11:37:05] 2026-03-16 10:36:07,493 | INFO     | [job] validate thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,517 | INFO     | [job] create_data_payload thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,523 | INFO     | [payload] validate_post thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,565 | INFO     | [job] job monitor thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,675 | INFO     | [payload] validate_pre thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,698 | INFO     | [data] copytool_in thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,753 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,800 | INFO     | [data] copytool_out thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:07,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-16 11:37:05] 2026-03-16 10:36:08,327 | INFO     | [job] control thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:08,826 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-16 11:37:05] 2026-03-16 10:36:08,982 | INFO     | [job] queue monitor thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:12,833 | INFO     | [data] queue_monitor thread has finished
[2026-03-16 11:37:05] 2026-03-16 10:36:37,029 | INFO     | PID=705133 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-16 11:37:05] 2026-03-16 10:36:37,029 | INFO     | .. there are 24 such processes running
[2026-03-16 11:37:05] 2026-03-16 10:36:37,029 | INFO     | found 0 job(s) in 20 queues
[2026-03-16 11:37:05] 2026-03-16 10:36:37,029 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-16 11:37:05] 2026-03-16 10:36:37,029 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-16 11:37:05] 2026-03-16 10:36:59,416 | INFO     | [monitor] cgroup control has ended
[2026-03-16 11:37:05] 2026-03-16 10:37:00,346 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22528311498560)>', '<ExcThread(monitor, started 22528069474048)>']
[2026-03-16 11:37:05] 2026-03-16 10:37:01,145 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-16 11:37:05] 2026-03-16 10:37:01,145 | INFO     | [monitor] control thread has ended
[2026-03-16 11:37:05] 2026-03-16 10:37:05,371 | INFO     | all workflow threads have been joined
[2026-03-16 11:37:05] 2026-03-16 10:37:05,371 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-16 11:37:05] 2026-03-16 10:37:05,371 | INFO     | traces error code: 0
[2026-03-16 11:37:05] 2026-03-16 10:37:05,372 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-16 11:37:05] 2026-03-16 10:37:05,546 [wrapper] ==== pilot stdout END ====
[2026-03-16 11:37:05] 2026-03-16 10:37:05,550 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-16 11:37:05] 2026-03-16 10:37:05,554 [wrapper] pilotpid: 705133
[2026-03-16 11:37:05] 2026-03-16 10:37:05,558 [wrapper] Pilot exit status: 0
[2026-03-16 11:37:05] 2026-03-16 10:37:05,574 [wrapper] pandaids: 7042433441
[2026-03-16 11:37:05] 2026-03-16 10:37:05,781 [wrapper] cleanup supervisor_pilot 1080145 705134
[2026-03-16 11:37:05] 2026-03-16 10:37:05,786 [wrapper] Test setup, not cleaning
[2026-03-16 11:37:05] 2026-03-16 10:37:05,790 [wrapper] apfmon messages muted
[2026-03-16 11:37:05] 2026-03-16 10:37:05,795 [wrapper] ==== wrapper stdout END ====
[2026-03-16 11:37:05] 2026-03-16 10:37:05,799 [wrapper] ==== wrapper stderr END ====
[2026-03-16 11:37:05]  *** Error codes and diagnostics ***
[2026-03-16 11:37:05]     "exeErrorCode": 0,
[2026-03-16 11:37:05]     "exeErrorDiag": "",
[2026-03-16 11:37:05]     "pilotErrorCode": 0,
[2026-03-16 11:37:05]     "pilotErrorDiag": "",
[2026-03-16 11:37:05]  *** Listing of results directory ***
[2026-03-16 11:37:05] total 608480
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc      5111 Mar 10 12:12 queuedata.json
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc    584627 Mar 10 12:12 pilot3.tar.gz
[2026-03-16 11:37:05] -rwx------. 1 boinc boinc     36322 Mar 10 12:12 runpilot2-wrapper.sh
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc       100 Mar 16 09:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-16 11:37:05] -rwxr-xr-x. 1 boinc boinc      7986 Mar 16 09:04 run_atlas
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc       105 Mar 16 09:04 job.xml
[2026-03-16 11:37:05] -rw-r--r--. 2 boinc boinc 436771893 Mar 16 09:04 EVNT.46701403._000840.pool.root.1
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc      6622 Mar 16 09:04 init_data.xml
[2026-03-16 11:37:05] -rw-r--r--. 2 boinc boinc     15845 Mar 16 09:04 start_atlas.sh
[2026-03-16 11:37:05] drwxrwx--x. 2 boinc boinc      4096 Mar 16 09:04 shared
[2026-03-16 11:37:05] -rw-r--r--. 2 boinc boinc    597956 Mar 16 09:04 input.tar.gz
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc         0 Mar 16 09:04 boinc_lockfile
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc      2564 Mar 16 09:04 pandaJob.out
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc   1006471 Mar 16 09:04 agis_schedconf.cvmfs.json
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc   1511579 Mar 16 09:04 agis_ddmendpoints.agis.ALL.json
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc       443 Mar 16 09:04 workernode_map.json
[2026-03-16 11:37:05] drwx------. 5 boinc boinc      4096 Mar 16 09:04 pilot3
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc 179196421 Mar 16 11:35 HITS.48955006._042146.pool.root.1
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc       530 Mar 16 11:35 boinc_task_state.xml
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc        95 Mar 16 11:35 pilot_heartbeat.json
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc      1026 Mar 16 11:35 memory_monitor_summary.json
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc    320014 Mar 16 11:36 log.48955006._042146.job.log.tgz.1
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc      6350 Mar 16 11:36 heartbeat.json
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc      8192 Mar 16 11:36 boinc_mmap_file
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc        27 Mar 16 11:36 wrapper_checkpoint.txt
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc      4829 Mar 16 11:37 pilotlog.txt
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc   1265411 Mar 16 11:37 log.48955006._042146.job.log.1
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc       357 Mar 16 11:37 output.list
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc       620 Mar 16 11:37 runtime_log
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc   1607680 Mar 16 11:37 result.tar.gz
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc      9204 Mar 16 11:37 runtime_log.err
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc       663 Mar 16 11:37 CmlLDmZBAK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm4qfLDmIz16To.diag
[2026-03-16 11:37:05] -rw-r--r--. 1 boinc boinc     20945 Mar 16 11:37 stderr.txt
[2026-03-16 11:37:05] HITS file was successfully produced:
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc 179196421 Mar 16 11:35 shared/HITS.pool.root.1
[2026-03-16 11:37:05]  *** Contents of shared directory: ***
[2026-03-16 11:37:05] total 603716
[2026-03-16 11:37:05] -rw-r--r--. 2 boinc boinc 436771893 Mar 16 09:04 ATLAS.root_0
[2026-03-16 11:37:05] -rw-r--r--. 2 boinc boinc     15845 Mar 16 09:04 start_atlas.sh
[2026-03-16 11:37:05] -rw-r--r--. 2 boinc boinc    597956 Mar 16 09:04 input.tar.gz
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc 179196421 Mar 16 11:35 HITS.pool.root.1
[2026-03-16 11:37:05] -rw-------. 1 boinc boinc   1607680 Mar 16 11:37 result.tar.gz
11:37:07 (697673): run_atlas exited; CPU time 34732.543656
11:37:07 (697673): called boinc_finish(0)

</stderr_txt>
]]>

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