Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:34:01 (1339189): wrapper (7.7.26015): starting
13:34:01 (1339189): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 13:34:01] Arguments: --nthreads 4
[2026-03-14 13:34:01] Threads: 4
[2026-03-14 13:34:01] Checking for CVMFS
[2026-03-14 13:34:01] No cvmfs_config command found, will try listing directly
[2026-03-14 13:34:01] CVMFS is ok
[2026-03-14 13:34:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 13:34:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 13:34:01] Further information can be found at the LHC@home message board.
[2026-03-14 13:34:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 13:34:01] Checking for apptainer binary...
[2026-03-14 13:34:01] which: no apptainer in ((null))
[2026-03-14 13:34:01] apptainer is not installed, using version from CVMFS
[2026-03-14 13:34:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 13:34:01] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2026-03-14 13:34:01] apptainer works
[2026-03-14 13:34:01] Set ATHENA_PROC_NUMBER=4
[2026-03-14 13:34:01] Set ATHENA_CORE_NUMBER=4
[2026-03-14 13:34:01] Starting ATLAS job with PandaID=7051153801
[2026-03-14 13:34:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 17:35:52]  *** The last 200 lines of the pilot log: ***
[2026-03-14 17:35:52] 2026-03-14 16:34:43,559 | INFO     | mean y: 2340385.6277056276
[2026-03-14 17:35:52] 2026-03-14 16:34:43,559 | INFO     | intersect: 5352385362.097994
[2026-03-14 17:35:52] 2026-03-14 16:34:43,560 | INFO     | chi2: 1.399356933354202
[2026-03-14 17:35:52] 2026-03-14 16:34:43,560 | INFO     | current chi2=1.399356933354202 (change=0.061572703516853816 %)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,560 | INFO     | right removable region: 230
[2026-03-14 17:35:52] 2026-03-14 16:34:43,561 | INFO     | sum of square deviations: 3822136780.0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,562 | INFO     | sum of deviations: -35637260851.00001
[2026-03-14 17:35:52] 2026-03-14 16:34:43,563 | INFO     | mean x: 1773499008.0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,563 | INFO     | mean y: 2354360.9956709957
[2026-03-14 17:35:52] 2026-03-14 16:34:43,563 | INFO     | intersect: 16538300195.745663
[2026-03-14 17:35:52] 2026-03-14 16:34:43,563 | INFO     | chi2: 0.17994827985941964
[2026-03-14 17:35:52] 2026-03-14 16:34:43,563 | INFO     | current chi2=0.17994827985941964 (change=87.14856256098186 %)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,564 | INFO     | sum of square deviations: 3579276412.5
[2026-03-14 17:35:52] 2026-03-14 16:34:43,566 | INFO     | sum of deviations: -24636413674.00002
[2026-03-14 17:35:52] 2026-03-14 16:34:43,566 | INFO     | mean x: 1773499160.5
[2026-03-14 17:35:52] 2026-03-14 16:34:43,566 | INFO     | mean y: 2347439.6991150444
[2026-03-14 17:35:52] 2026-03-14 16:34:43,566 | INFO     | intersect: 12209468078.938026
[2026-03-14 17:35:52] 2026-03-14 16:34:43,566 | INFO     | chi2: 0.12041421346758878
[2026-03-14 17:35:52] 2026-03-14 16:34:43,566 | INFO     | current chi2=0.12041421346758878 (change=33.08398748703819 %)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,567 | INFO     | sum of square deviations: 3346927870.0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,569 | INFO     | sum of deviations: -13212232779.99999
[2026-03-14 17:35:52] 2026-03-14 16:34:43,569 | INFO     | mean x: 1773499313.0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,569 | INFO     | mean y: 2339948.8009049776
[2026-03-14 17:35:52] 2026-03-14 16:34:43,569 | INFO     | intersect: 7003353017.698044
[2026-03-14 17:35:52] 2026-03-14 16:34:43,569 | INFO     | chi2: 0.04224664848766723
[2026-03-14 17:35:52] 2026-03-14 16:34:43,569 | INFO     | current chi2=0.04224664848766723 (change=64.91556331176925 %)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,570 | INFO     | sum of square deviations: 3124858590.0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,571 | INFO     | sum of deviations: -8328793996.500004
[2026-03-14 17:35:52] 2026-03-14 16:34:43,571 | INFO     | mean x: 1773499465.5
[2026-03-14 17:35:52] 2026-03-14 16:34:43,572 | INFO     | mean y: 2336616.300925926
[2026-03-14 17:35:52] 2026-03-14 16:34:43,572 | INFO     | intersect: 4729306261.686501
[2026-03-14 17:35:52] 2026-03-14 16:34:43,572 | INFO     | chi2: 0.022702732819831702
[2026-03-14 17:35:52] 2026-03-14 16:34:43,572 | INFO     | current chi2=0.022702732819831702 (change=46.261458287136904 %)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,573 | INFO     | sum of square deviations: 2912836010.0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,574 | INFO     | sum of deviations: -5814764854.0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,575 | INFO     | mean x: 1773499618.0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,575 | INFO     | mean y: 2334807.8246445497
[2026-03-14 17:35:52] 2026-03-14 16:34:43,575 | INFO     | intersect: 3542693143.112056
[2026-03-14 17:35:52] 2026-03-14 16:34:43,575 | INFO     | chi2: 0.019290469756752797
[2026-03-14 17:35:52] 2026-03-14 16:34:43,575 | INFO     | current chi2=0.019290469756752797 (change=15.030186410413831 %)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,575 | INFO     | left removable region: 50
[2026-03-14 17:35:52] 2026-03-14 16:34:43,576 | INFO     | sum of square deviations: 1808350185.0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,577 | INFO     | sum of deviations: 1375789425.0000002
[2026-03-14 17:35:52] 2026-03-14 16:34:43,577 | INFO     | mean x: 1773500197.5
[2026-03-14 17:35:52] 2026-03-14 16:34:43,577 | INFO     | mean y: 2328924.7555555557
[2026-03-14 17:35:52] 2026-03-14 16:34:43,577 | INFO     | intersect: -1346946695.1962912
[2026-03-14 17:35:52] 2026-03-14 16:34:43,578 | INFO     | chi2: 0.000335066116198675
[2026-03-14 17:35:52] 2026-03-14 16:34:43,578 | INFO     | current memory leak: 0.76 B/s (using 180 data points, chi2=0.00)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,578 | INFO     | could have reported an average CPU frequency of 2506 MHz (11 samples)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,579 | INFO     | ..............................
[2026-03-14 17:35:52] 2026-03-14 16:34:43,579 | INFO     | . Timing measurements:
[2026-03-14 17:35:52] 2026-03-14 16:34:43,579 | INFO     | . get job = 0 s
[2026-03-14 17:35:52] 2026-03-14 16:34:43,579 | INFO     | . initial setup = 7 s
[2026-03-14 17:35:52] 2026-03-14 16:34:43,579 | INFO     | . payload setup = 7 s
[2026-03-14 17:35:52] 2026-03-14 16:34:43,580 | INFO     | . stage-in = 0 s
[2026-03-14 17:35:52] 2026-03-14 16:34:43,580 | INFO     | . payload execution = 14396 s
[2026-03-14 17:35:52] 2026-03-14 16:34:43,580 | INFO     | . stage-out = 1 s
[2026-03-14 17:35:52] 2026-03-14 16:34:43,580 | INFO     | . log creation = 0 s
[2026-03-14 17:35:52] 2026-03-14 16:34:43,580 | INFO     | ..............................
[2026-03-14 17:35:52] 2026-03-14 16:34:43,701 | INFO     | 
[2026-03-14 17:35:52] 2026-03-14 16:34:43,701 | INFO     | job summary report
[2026-03-14 17:35:52] 2026-03-14 16:34:43,701 | INFO     | --------------------------------------------------
[2026-03-14 17:35:52] 2026-03-14 16:34:43,701 | INFO     | PanDA job id: 7051153801
[2026-03-14 17:35:52] 2026-03-14 16:34:43,701 | INFO     | task id: 48967085
[2026-03-14 17:35:52] 2026-03-14 16:34:43,701 | INFO     | errors: (none)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,702 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 17:35:52] 2026-03-14 16:34:43,702 | INFO     | pilot state: finished 
[2026-03-14 17:35:52] 2026-03-14 16:34:43,702 | INFO     | transexitcode: 0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,702 | INFO     | exeerrorcode: 0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,702 | INFO     | exeerrordiag: 
[2026-03-14 17:35:52] 2026-03-14 16:34:43,702 | INFO     | exitcode: 0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,702 | INFO     | exitmsg: OK
[2026-03-14 17:35:52] 2026-03-14 16:34:43,702 | INFO     | cpuconsumptiontime: 54165 s
[2026-03-14 17:35:52] 2026-03-14 16:34:43,702 | INFO     | nevents: 400
[2026-03-14 17:35:52] 2026-03-14 16:34:43,702 | INFO     | neventsw: 0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,703 | INFO     | pid: 1348239
[2026-03-14 17:35:52] 2026-03-14 16:34:43,703 | INFO     | pgrp: 1348239
[2026-03-14 17:35:52] 2026-03-14 16:34:43,703 | INFO     | corecount: 4
[2026-03-14 17:35:52] 2026-03-14 16:34:43,703 | INFO     | event service: False
[2026-03-14 17:35:52] 2026-03-14 16:34:43,703 | INFO     | sizes: {0: 2279152, 1: 2280281, 12: 2280281, 14407: 2311261, 14408: 2311260, 14409: 2320520, 14411: 2320658}
[2026-03-14 17:35:52] 2026-03-14 16:34:43,703 | INFO     | --------------------------------------------------
[2026-03-14 17:35:52] 2026-03-14 16:34:43,703 | INFO     | 
[2026-03-14 17:35:52] 2026-03-14 16:34:43,703 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/0
[2026-03-14 17:35:52] 2026-03-14 16:34:43,737 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,738 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,738 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,738 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,738 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,738 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,738 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,738 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,738 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,738 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,738 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,739 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,739 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,739 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,739 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,739 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,739 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,739 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,739 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,739 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 17:35:52] 2026-03-14 16:34:43,740 | INFO     | job 7051153801 has completed (purged errors)
[2026-03-14 17:35:52] 2026-03-14 16:34:43,740 | INFO     | overall cleanup function is called
[2026-03-14 17:35:52] 2026-03-14 16:34:44,072 | INFO     | number of running child processes to parent process 1348239: 1
[2026-03-14 17:35:52] 2026-03-14 16:34:44,072 | INFO     | maximum number of monitored processes: 6
[2026-03-14 17:35:52] 2026-03-14 16:34:44,072 | INFO     | aborting job monitoring since job object (job id=7051153801) has expired
[2026-03-14 17:35:52] 2026-03-14 16:34:44,755 | INFO     | --- collectZombieJob: --- 10, [1348239]
[2026-03-14 17:35:52] 2026-03-14 16:34:44,755 | INFO     | zombie collector waiting for pid 1348239
[2026-03-14 17:35:52] 2026-03-14 16:34:44,755 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 17:35:52] 2026-03-14 16:34:44,755 | INFO     | collected zombie processes
[2026-03-14 17:35:52] 2026-03-14 16:34:44,755 | INFO     | will attempt to kill all subprocesses of pid=1348239
[2026-03-14 17:35:52] 2026-03-14 16:34:45,443 | INFO     | process IDs to be killed: [1348239] (in reverse order)
[2026-03-14 17:35:52] 2026-03-14 16:34:45,612 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 17:35:52] 2026-03-14 16:34:45,613 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 17:35:52] 2026-03-14 16:34:45,632 | INFO     | did not find any defunct processes belonging to 1348239
[2026-03-14 17:35:52] 2026-03-14 16:34:45,646 | INFO     | did not find any defunct processes belonging to 1348239
[2026-03-14 17:35:52] 2026-03-14 16:34:45,646 | INFO     | ready for new job
[2026-03-14 17:35:52] 2026-03-14 16:34:45,646 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 17:35:52] 2026-03-14 16:34:45,649 | INFO     | **************************************
[2026-03-14 17:35:52] 2026-03-14 16:34:45,649 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 17:35:52] 2026-03-14 16:34:45,649 | INFO     | **************************************
[2026-03-14 17:35:52] 2026-03-14 16:34:45,649 | INFO     | 
[2026-03-14 17:35:52] 2026-03-14 16:34:45,653 | INFO     | architecture information:
[2026-03-14 17:35:52] 2026-03-14 16:34:45,653 | INFO     | executing command: cat /etc/os-release
[2026-03-14 17:35:52] 2026-03-14 16:34:45,671 | INFO     | cat /etc/os-release:
[2026-03-14 17:35:52] NAME="CentOS Linux"
[2026-03-14 17:35:52] VERSION="7 (Core)"
[2026-03-14 17:35:52] ID="centos"
[2026-03-14 17:35:52] ID_LIKE="rhel fedora"
[2026-03-14 17:35:52] VERSION_ID="7"
[2026-03-14 17:35:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 17:35:52] ANSI_COLOR="0;31"
[2026-03-14 17:35:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 17:35:52] HOME_URL="https://www.centos.org/"
[2026-03-14 17:35:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 17:35:52] 
[2026-03-14 17:35:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 17:35:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 17:35:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 17:35:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 17:35:52] 
[2026-03-14 17:35:52] 2026-03-14 16:34:45,671 | INFO     | **************************************
[2026-03-14 17:35:52] 2026-03-14 16:34:46,174 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/0
[2026-03-14 17:35:52] 2026-03-14 16:34:46,193 | INFO     | sufficient remaining disk space (20610809856 B)
[2026-03-14 17:35:52] 2026-03-14 16:34:46,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 17:35:52] 2026-03-14 16:34:46,194 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 17:35:52] 2026-03-14 16:34:46,194 | INFO     | update_server=False
[2026-03-14 17:35:52] 2026-03-14 16:34:46,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 17:35:52] 2026-03-14 16:34:46,428 | INFO     | all data control threads have been joined
[2026-03-14 17:35:52] 2026-03-14 16:34:46,575 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-14 17:35:52] 2026-03-14 16:34:46,575 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-14 17:35:52] 2026-03-14 16:34:46,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 17:35:52] 2026-03-14 16:34:46,575 | INFO     | will abort loop
[2026-03-14 17:35:52] 2026-03-14 16:34:46,668 | INFO     | all job control threads have been joined
[2026-03-14 17:35:52] 2026-03-14 16:34:47,069 | INFO     | all payload control threads have been joined
[2026-03-14 17:35:52] 2026-03-14 16:34:47,199 | INFO     | [job] retrieve thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:47,361 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 17:35:52] 2026-03-14 16:34:47,433 | INFO     | [data] control thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:47,551 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:47,580 | INFO     | [job] job monitor thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:47,673 | INFO     | [job] control thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:47,824 | INFO     | [job] validate thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:47,919 | INFO     | [data] copytool_in thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:47,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 17:35:52] 2026-03-14 16:34:48,074 | INFO     | [payload] control thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:48,092 | INFO     | [payload] failed_post thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:48,100 | INFO     | [payload] validate_post thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:48,197 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:48,199 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:48,710 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 17:35:52] 2026-03-14 16:34:49,366 | INFO     | [data] copytool_out thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:49,715 | INFO     | [job] queue monitor thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:51,939 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:34:56,893 | INFO     | job.realtimelogging is not enabled
[2026-03-14 17:35:52] 2026-03-14 16:34:57,898 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 17:35:52] 2026-03-14 16:35:16,174 | INFO     | PID=1343352 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 17:35:52] 2026-03-14 16:35:16,175 | INFO     | .. there are 13 such processes running
[2026-03-14 17:35:52] 2026-03-14 16:35:16,175 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 17:35:52] 2026-03-14 16:35:16,176 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 17:35:52] 2026-03-14 16:35:16,176 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 17:35:52] 2026-03-14 16:35:45,317 | INFO     | [monitor] cgroup control has ended
[2026-03-14 17:35:52] 2026-03-14 16:35:47,109 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22699547543360)>', '<ExcThread(monitor, started 22699310331648)>']
[2026-03-14 17:35:52] 2026-03-14 16:35:47,332 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 17:35:52] 2026-03-14 16:35:47,332 | INFO     | [monitor] control thread has ended
[2026-03-14 17:35:52] 2026-03-14 16:35:52,134 | INFO     | all workflow threads have been joined
[2026-03-14 17:35:52] 2026-03-14 16:35:52,134 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 17:35:52] 2026-03-14 16:35:52,134 | INFO     | traces error code: 0
[2026-03-14 17:35:52] 2026-03-14 16:35:52,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 17:35:52] 2026-03-14 16:35:52,287 [wrapper] ==== pilot stdout END ====
[2026-03-14 17:35:52] 2026-03-14 16:35:52,291 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 17:35:52] 2026-03-14 16:35:52,294 [wrapper] pilotpid: 1343352
[2026-03-14 17:35:52] 2026-03-14 16:35:52,297 [wrapper] Pilot exit status: 0
[2026-03-14 17:35:52] 2026-03-14 16:35:52,346 [wrapper] pandaids: 7051153801
[2026-03-14 17:35:52] 2026-03-14 16:35:52,436 [wrapper] cleanup supervisor_pilot 1657387 1343353
[2026-03-14 17:35:52] 2026-03-14 16:35:52,440 [wrapper] Test setup, not cleaning
[2026-03-14 17:35:52] 2026-03-14 16:35:52,444 [wrapper] apfmon messages muted
[2026-03-14 17:35:52] 2026-03-14 16:35:52,447 [wrapper] ==== wrapper stdout END ====
[2026-03-14 17:35:52] 2026-03-14 16:35:52,450 [wrapper] ==== wrapper stderr END ====
[2026-03-14 17:35:52]  *** Error codes and diagnostics ***
[2026-03-14 17:35:52]     "exeErrorCode": 0,
[2026-03-14 17:35:52]     "exeErrorDiag": "",
[2026-03-14 17:35:52]     "pilotErrorCode": 0,
[2026-03-14 17:35:52]     "pilotErrorDiag": "",
[2026-03-14 17:35:52]  *** Listing of results directory ***
[2026-03-14 17:35:52] total 406260
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc    585013 Mar 12 05:15 pilot3.tar.gz
[2026-03-14 17:35:52] -rwx------. 1 boinc boinc     36322 Mar 12 05:18 runpilot2-wrapper.sh
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc      5111 Mar 12 05:19 queuedata.json
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc       100 Mar 14 13:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 17:35:52] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 13:33 run_atlas
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc       105 Mar 14 13:33 job.xml
[2026-03-14 17:35:52] -rw-r--r--. 2 boinc boinc 211942762 Mar 14 13:34 EVNT.48967083._000559.pool.root.1
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc      6563 Mar 14 13:34 init_data.xml
[2026-03-14 17:35:52] -rw-r--r--. 2 boinc boinc     15845 Mar 14 13:34 start_atlas.sh
[2026-03-14 17:35:52] drwxrwx--x. 2 boinc boinc      4096 Mar 14 13:34 shared
[2026-03-14 17:35:52] -rw-r--r--. 2 boinc boinc    597526 Mar 14 13:34 input.tar.gz
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc         0 Mar 14 13:34 boinc_lockfile
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc      2563 Mar 14 13:34 pandaJob.out
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc   1004579 Mar 14 13:34 agis_schedconf.cvmfs.json
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc       452 Mar 14 13:34 workernode_map.json
[2026-03-14 17:35:52] drwx------. 5 boinc boinc      4096 Mar 14 13:34 pilot3
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc 195249513 Mar 14 17:34 HITS.48967085._014241.pool.root.1
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc       529 Mar 14 17:34 boinc_task_state.xml
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc      1033 Mar 14 17:34 memory_monitor_summary.json
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc   1511579 Mar 14 17:34 agis_ddmendpoints.agis.ALL.json
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc    415267 Mar 14 17:34 log.48967085._014241.job.log.tgz.1
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc      6401 Mar 14 17:34 heartbeat.json
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc        95 Mar 14 17:35 pilot_heartbeat.json
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc      8192 Mar 14 17:35 boinc_mmap_file
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc        27 Mar 14 17:35 wrapper_checkpoint.txt
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc      5087 Mar 14 17:35 pilotlog.txt
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc   2023432 Mar 14 17:35 log.48967085._014241.job.log.1
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc       357 Mar 14 17:35 output.list
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc       620 Mar 14 17:35 runtime_log
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc   2457600 Mar 14 17:35 result.tar.gz
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc      9205 Mar 14 17:35 runtime_log.err
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc       665 Mar 14 17:35 I8tKDmPgmK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmN2lLDmIvjnwn.diag
[2026-03-14 17:35:52] -rw-r--r--. 1 boinc boinc     20833 Mar 14 17:35 stderr.txt
[2026-03-14 17:35:52] HITS file was successfully produced:
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc 195249513 Mar 14 17:34 shared/HITS.pool.root.1
[2026-03-14 17:35:52]  *** Contents of shared directory: ***
[2026-03-14 17:35:52] total 400660
[2026-03-14 17:35:52] -rw-r--r--. 2 boinc boinc 211942762 Mar 14 13:34 ATLAS.root_0
[2026-03-14 17:35:52] -rw-r--r--. 2 boinc boinc     15845 Mar 14 13:34 start_atlas.sh
[2026-03-14 17:35:52] -rw-r--r--. 2 boinc boinc    597526 Mar 14 13:34 input.tar.gz
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc 195249513 Mar 14 17:34 HITS.pool.root.1
[2026-03-14 17:35:52] -rw-------. 1 boinc boinc   2457600 Mar 14 17:35 result.tar.gz
17:35:54 (1339189): run_atlas exited; CPU time 54830.318289
17:35:54 (1339189): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN