Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:22:12 (55339): wrapper (7.7.26015): starting
19:22:12 (55339): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 19:22:12] Arguments: --nthreads 4
[2026-03-14 19:22:12] Threads: 4
[2026-03-14 19:22:12] Checking for CVMFS
[2026-03-14 19:22:12] No cvmfs_config command found, will try listing directly
[2026-03-14 19:22:12] CVMFS is ok
[2026-03-14 19:22:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 19:22:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 19:22:12] Further information can be found at the LHC@home message board.
[2026-03-14 19:22:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 19:22:12] Checking for apptainer binary...
[2026-03-14 19:22:12] which: no apptainer in ((null))
[2026-03-14 19:22:12] apptainer is not installed, using version from CVMFS
[2026-03-14 19:22:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 19:22:12] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot200/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-14 19:22:12] apptainer works
[2026-03-14 19:22:12] Set ATHENA_PROC_NUMBER=4
[2026-03-14 19:22:12] Set ATHENA_CORE_NUMBER=4
[2026-03-14 19:22:12] Starting ATLAS job with PandaID=7043207442
[2026-03-14 19:22:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot200/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 20:44:38]  *** The last 200 lines of the pilot log: ***
[2026-03-14 20:44:38] ]
[2026-03-14 20:44:38] 2026-03-14 19:43:41,753 | INFO     | transferring file log.48955006._045066.job.log.tgz.1 from /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7043207442/log.48955006._045066.job.log.tgz.1 to /var/lib/
[2026-03-14 20:44:38] 2026-03-14 19:43:41,753 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7043207442/log.48955006._045066.job.log.tgz.1 /var/lib/boinc/var/slot200/slots/0/
[2026-03-14 20:44:38] 2026-03-14 19:43:41,770 | INFO     | adding to output.list: log.48955006._045066.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/28/log.48955006._045066.job.log.tg
[2026-03-14 20:44:38] 2026-03-14 19:43:41,771 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 20:44:38] 2026-03-14 19:43:41,771 | INFO     | summary of transferred files:
[2026-03-14 20:44:38] 2026-03-14 19:43:41,771 | INFO     |  -- lfn=log.48955006._045066.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 20:44:38] 2026-03-14 19:43:41,771 | INFO     | stage-out finished correctly
[2026-03-14 20:44:38] 2026-03-14 19:43:41,826 | WARNING  | process 65956 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 20:44:38] 2026-03-14 19:43:41,827 | INFO     | using path: /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7043207442/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 20:44:38] 2026-03-14 19:43:41,827 | INFO     | using path: /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7043207442/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 20:44:38] 2026-03-14 19:43:41,828 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-14 20:44:38] 2026-03-14 19:43:41,828 | WARNING  | maxPSS not found in memory monitor output
[2026-03-14 20:44:38] 2026-03-14 19:43:41,828 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2597670 B
[2026-03-14 20:44:38] 2026-03-14 19:43:41,828 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15377 B
[2026-03-14 20:44:38] 2026-03-14 19:43:41,828 | INFO     | executing command: df -mP /var/lib/boinc/var/slot200/slots/0
[2026-03-14 20:44:38] 2026-03-14 19:43:41,842 | INFO     | sufficient remaining disk space (20200816640 B)
[2026-03-14 20:44:38] 2026-03-14 19:43:41,842 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-14 20:44:38] 2026-03-14 19:43:41,842 | INFO     | size of work directory /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7043207442: 2897715 B (within 5033164800 B limit)
[2026-03-14 20:44:38] 2026-03-14 19:43:41,843 | INFO     | pfn file=/var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7043207442/HITS.48955006._045066.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-14 20:44:38] 2026-03-14 19:43:41,843 | INFO     | total size of present files: 0 B (workdir size: 2897715 B)
[2026-03-14 20:44:38] 2026-03-14 19:43:41,843 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7043207442/HITS.48955006._045066.pool.root.1 since it does not exist
[2026-03-14 20:44:38] 2026-03-14 19:43:42,320 | INFO     | number of running child processes to parent process 65956: 1
[2026-03-14 20:44:38] 2026-03-14 19:43:42,320 | INFO     | maximum number of monitored processes: 6
[2026-03-14 20:44:38] 2026-03-14 19:43:42,757 | INFO     | time since job start (4877s) is within the limit (345600.0s)
[2026-03-14 20:44:38] 2026-03-14 19:43:43,102 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 20:44:38] 2026-03-14 19:43:44,764 | INFO     | time since job start (4879s) is within the limit (345600.0s)
[2026-03-14 20:44:38] 2026-03-14 19:43:44,823 | INFO     | monitor loop #352: job 0:7043207442 is in state 'finished'
[2026-03-14 20:44:38] 2026-03-14 19:43:44,823 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-14 20:44:38] 2026-03-14 19:43:45,894 | INFO     | job 7043207442 has state=finished
[2026-03-14 20:44:38] 2026-03-14 19:43:45,895 | INFO     | preparing for final server update for job 7043207442 in state='finished'
[2026-03-14 20:44:38] 2026-03-14 19:43:45,895 | INFO     | reading metadata from: /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7043207442/jobReport.json
[2026-03-14 20:44:38] 2026-03-14 19:43:45,896 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot200/slots/0/workernode_map.json
[2026-03-14 20:44:38] 2026-03-14 19:43:45,896 | INFO     | this job has now completed (state=finished)
[2026-03-14 20:44:38] 2026-03-14 19:43:45,896 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 20:44:38] 2026-03-14 19:43:45,896 | INFO     | log transfer has been attempted: DONE
[2026-03-14 20:44:38] 2026-03-14 19:43:45,896 | INFO     | job 7043207442 has finished - writing final server update
[2026-03-14 20:44:38] 2026-03-14 19:43:45,897 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_674457/.job.ad'
[2026-03-14 20:44:38] 2026-03-14 19:43:45,897 | INFO     | total number of processed events: 400 (read)
[2026-03-14 20:44:38] 2026-03-14 19:43:45,914 | INFO     | using path: /var/lib/boinc/var/slot200/slots/0/PanDA_Pilot-7043207442/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 20:44:38] 2026-03-14 19:43:45,915 | INFO     | extracted standard info from prmon json
[2026-03-14 20:44:38] 2026-03-14 19:43:45,915 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 20:44:38] 2026-03-14 19:43:45,915 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 20:44:38] 2026-03-14 19:43:45,915 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 20:44:38] 2026-03-14 19:43:45,915 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 20:44:38] 2026-03-14 19:43:45,916 | INFO     | fitting pss+swap vs Time
[2026-03-14 20:44:38] 2026-03-14 19:43:45,916 | INFO     | sum of square deviations: 120605052.0
[2026-03-14 20:44:38] 2026-03-14 19:43:45,916 | INFO     | sum of deviations: -944391447.0
[2026-03-14 20:44:38] 2026-03-14 19:43:45,917 | INFO     | mean x: 1773515067.0
[2026-03-14 20:44:38] 2026-03-14 19:43:45,917 | INFO     | mean y: 2336299.2328767125
[2026-03-14 20:44:38] 2026-03-14 19:43:45,917 | INFO     | intersect: 13889751731.883507
[2026-03-14 20:44:38] 2026-03-14 19:43:45,917 | INFO     | chi2: 0.0006785288216720795
[2026-03-14 20:44:38] 2026-03-14 19:43:45,917 | INFO     | current memory leak: -7.83 B/s (using 73 data points, chi2=0.00)
[2026-03-14 20:44:38] 2026-03-14 19:43:45,917 | INFO     | could have reported an average CPU frequency of 3586 MHz (6 samples)
[2026-03-14 20:44:38] 2026-03-14 19:43:45,917 | INFO     | ..............................
[2026-03-14 20:44:38] 2026-03-14 19:43:45,917 | INFO     | . Timing measurements:
[2026-03-14 20:44:38] 2026-03-14 19:43:45,918 | INFO     | . get job = 0 s
[2026-03-14 20:44:38] 2026-03-14 19:43:45,918 | INFO     | . initial setup = 5 s
[2026-03-14 20:44:38] 2026-03-14 19:43:45,918 | INFO     | . payload setup = 5 s
[2026-03-14 20:44:38] 2026-03-14 19:43:45,918 | INFO     | . stage-in = 0 s
[2026-03-14 20:44:38] 2026-03-14 19:43:45,918 | INFO     | . payload execution = 4856 s
[2026-03-14 20:44:38] 2026-03-14 19:43:45,918 | INFO     | . stage-out = 0 s
[2026-03-14 20:44:38] 2026-03-14 19:43:45,918 | INFO     | . log creation = 0 s
[2026-03-14 20:44:38] 2026-03-14 19:43:45,918 | INFO     | ..............................
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | 
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | job summary report
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | --------------------------------------------------
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | PanDA job id: 7043207442
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | task id: 48955006
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | errors: (none)
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | pilot state: finished 
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | transexitcode: 0
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | exeerrorcode: 0
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | exeerrordiag: 
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | exitcode: 0
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | exitmsg: OK
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | cpuconsumptiontime: 18570 s
[2026-03-14 20:44:38] 2026-03-14 19:43:45,965 | INFO     | nevents: 400
[2026-03-14 20:44:38] 2026-03-14 19:43:45,966 | INFO     | neventsw: 0
[2026-03-14 20:44:38] 2026-03-14 19:43:45,966 | INFO     | pid: 65956
[2026-03-14 20:44:38] 2026-03-14 19:43:45,966 | INFO     | pgrp: 65956
[2026-03-14 20:44:38] 2026-03-14 19:43:45,966 | INFO     | corecount: 4
[2026-03-14 20:44:38] 2026-03-14 19:43:45,966 | INFO     | event service: False
[2026-03-14 20:44:38] 2026-03-14 19:43:45,966 | INFO     | sizes: {0: 2280242, 11: 2280242, 4865: 2306526, 4866: 2315548, 4867: 2315632, 4870: 2315826}
[2026-03-14 20:44:38] 2026-03-14 19:43:45,966 | INFO     | --------------------------------------------------
[2026-03-14 20:44:38] 2026-03-14 19:43:45,966 | INFO     | 
[2026-03-14 20:44:38] 2026-03-14 19:43:45,966 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot200/slots/0
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,983 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 20:44:38] 2026-03-14 19:43:45,984 | INFO     | job 7043207442 has completed (purged errors)
[2026-03-14 20:44:38] 2026-03-14 19:43:45,984 | INFO     | overall cleanup function is called
[2026-03-14 20:44:38] 2026-03-14 19:43:46,991 | INFO     | --- collectZombieJob: --- 10, [65956]
[2026-03-14 20:44:38] 2026-03-14 19:43:46,991 | INFO     | zombie collector waiting for pid 65956
[2026-03-14 20:44:38] 2026-03-14 19:43:46,991 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 20:44:38] 2026-03-14 19:43:46,991 | INFO     | collected zombie processes
[2026-03-14 20:44:38] 2026-03-14 19:43:46,991 | INFO     | will attempt to kill all subprocesses of pid=65956
[2026-03-14 20:44:38] 2026-03-14 19:43:47,446 | INFO     | process IDs to be killed: [65956] (in reverse order)
[2026-03-14 20:44:38] 2026-03-14 19:43:47,669 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 20:44:38] 2026-03-14 19:43:47,669 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 20:44:38] 2026-03-14 19:43:47,698 | INFO     | did not find any defunct processes belonging to 65956
[2026-03-14 20:44:38] 2026-03-14 19:43:47,726 | INFO     | did not find any defunct processes belonging to 65956
[2026-03-14 20:44:38] 2026-03-14 19:43:47,726 | INFO     | ready for new job
[2026-03-14 20:44:38] 2026-03-14 19:43:47,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 20:44:38] 2026-03-14 19:43:47,728 | INFO     | **************************************
[2026-03-14 20:44:38] 2026-03-14 19:43:47,728 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 20:44:38] 2026-03-14 19:43:47,728 | INFO     | **************************************
[2026-03-14 20:44:38] 2026-03-14 19:43:47,728 | INFO     | 
[2026-03-14 20:44:38] 2026-03-14 19:43:47,733 | INFO     | architecture information:
[2026-03-14 20:44:38] 2026-03-14 19:43:47,733 | INFO     | executing command: cat /etc/os-release
[2026-03-14 20:44:38] 2026-03-14 19:43:47,746 | INFO     | cat /etc/os-release:
[2026-03-14 20:44:38] NAME="CentOS Linux"
[2026-03-14 20:44:38] VERSION="7 (Core)"
[2026-03-14 20:44:38] ID="centos"
[2026-03-14 20:44:38] ID_LIKE="rhel fedora"
[2026-03-14 20:44:38] VERSION_ID="7"
[2026-03-14 20:44:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 20:44:38] ANSI_COLOR="0;31"
[2026-03-14 20:44:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 20:44:38] HOME_URL="https://www.centos.org/"
[2026-03-14 20:44:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 20:44:38] 
[2026-03-14 20:44:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 20:44:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 20:44:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 20:44:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 20:44:38] 
[2026-03-14 20:44:38] 2026-03-14 19:43:47,747 | INFO     | **************************************
[2026-03-14 20:44:38] 2026-03-14 19:43:48,249 | INFO     | executing command: df -mP /var/lib/boinc/var/slot200/slots/0
[2026-03-14 20:44:38] 2026-03-14 19:43:48,263 | INFO     | sufficient remaining disk space (20188233728 B)
[2026-03-14 20:44:38] 2026-03-14 19:43:48,263 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 20:44:38] 2026-03-14 19:43:48,263 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 20:44:38] 2026-03-14 19:43:48,263 | INFO     | update_server=False
[2026-03-14 20:44:38] 2026-03-14 19:43:48,263 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 20:44:38] 2026-03-14 19:43:48,263 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 20:44:38] 2026-03-14 19:43:48,331 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 20:44:38] 2026-03-14 19:43:48,331 | INFO     | aborting loop
[2026-03-14 20:44:38] 2026-03-14 19:43:48,824 | INFO     | all data control threads have been joined
[2026-03-14 20:44:38] 2026-03-14 19:43:48,930 | INFO     | all job control threads have been joined
[2026-03-14 20:44:38] 2026-03-14 19:43:49,130 | INFO     | all payload control threads have been joined
[2026-03-14 20:44:38] 2026-03-14 19:43:49,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 20:44:38] 2026-03-14 19:43:49,268 | INFO     | [job] retrieve thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:49,307 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:49,331 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:49,336 | INFO     | [job] job monitor thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:49,377 | INFO     | [data] copytool_in thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:49,612 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:49,649 | INFO     | [payload] failed_post thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:49,829 | INFO     | [data] control thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:49,935 | INFO     | [job] control thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:50,135 | INFO     | [payload] control thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:50,213 | INFO     | [payload] validate_post thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:50,272 | INFO     | [data] copytool_out thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:50,574 | INFO     | [job] validate thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:50,975 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 20:44:38] 2026-03-14 19:43:51,980 | INFO     | [job] queue monitor thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:53,160 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:43:58,582 | INFO     | job.realtimelogging is not enabled
[2026-03-14 20:44:38] 2026-03-14 19:43:59,587 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 20:44:38] 2026-03-14 19:44:18,383 | INFO     | PID=59906 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 20:44:38] 2026-03-14 19:44:18,387 | INFO     | .. there are 48 such processes running
[2026-03-14 20:44:38] 2026-03-14 19:44:18,387 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 20:44:38] 2026-03-14 19:44:18,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 20:44:38] 2026-03-14 19:44:18,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 20:44:38] 2026-03-14 19:44:32,690 | INFO     | [monitor] cgroup control has ended
[2026-03-14 20:44:38] 2026-03-14 19:44:33,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23125085693760)>', '<ExcThread(monitor, started 23124845537024)>']
[2026-03-14 20:44:38] 2026-03-14 19:44:33,462 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 20:44:38] 2026-03-14 19:44:33,462 | INFO     | [monitor] control thread has ended
[2026-03-14 20:44:38] 2026-03-14 19:44:38,159 | INFO     | all workflow threads have been joined
[2026-03-14 20:44:38] 2026-03-14 19:44:38,159 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 20:44:38] 2026-03-14 19:44:38,159 | INFO     | traces error code: 0
[2026-03-14 20:44:38] 2026-03-14 19:44:38,159 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 20:44:38] 2026-03-14 19:44:38,386 [wrapper] ==== pilot stdout END ====
[2026-03-14 20:44:38] 2026-03-14 19:44:38,389 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 20:44:38] 2026-03-14 19:44:38,391 [wrapper] pilotpid: 59906
[2026-03-14 20:44:38] 2026-03-14 19:44:38,393 [wrapper] Pilot exit status: 0
[2026-03-14 20:44:38] 2026-03-14 19:44:38,403 [wrapper] pandaids: 7043207442
[2026-03-14 20:44:38] 2026-03-14 19:44:38,535 [wrapper] cleanup supervisor_pilot  699431 59907
[2026-03-14 20:44:38] 2026-03-14 19:44:38,538 [wrapper] Test setup, not cleaning
[2026-03-14 20:44:38] 2026-03-14 19:44:38,540 [wrapper] apfmon messages muted
[2026-03-14 20:44:38] 2026-03-14 19:44:38,542 [wrapper] ==== wrapper stdout END ====
[2026-03-14 20:44:38] 2026-03-14 19:44:38,544 [wrapper] ==== wrapper stderr END ====
[2026-03-14 20:44:38]  *** Error codes and diagnostics ***
[2026-03-14 20:44:38]     "exeErrorCode": 0,
[2026-03-14 20:44:38]     "exeErrorDiag": "",
[2026-03-14 20:44:38]     "pilotErrorCode": 0,
[2026-03-14 20:44:38]     "pilotErrorDiag": "",
[2026-03-14 20:44:38]  *** Listing of results directory ***
[2026-03-14 20:44:38] total 622960
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc    585013 Mar 12 11:21 pilot3.tar.gz
[2026-03-14 20:44:38] -rwx------. 1 boinc boinc     36322 Mar 12 11:24 runpilot2-wrapper.sh
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc      5111 Mar 12 11:26 queuedata.json
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc       100 Mar 14 19:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 20:44:38] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 19:22 run_atlas
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc       105 Mar 14 19:22 job.xml
[2026-03-14 20:44:38] -rw-r--r--. 2 boinc boinc 442451314 Mar 14 19:22 EVNT.46701403._000893.pool.root.1
[2026-03-14 20:44:38] -rw-r--r--. 2 boinc boinc     15845 Mar 14 19:22 start_atlas.sh
[2026-03-14 20:44:38] drwxrwx--x. 2 boinc boinc      4096 Mar 14 19:22 shared
[2026-03-14 20:44:38] -rw-r--r--. 2 boinc boinc    597531 Mar 14 19:22 input.tar.gz
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc      6708 Mar 14 19:22 init_data.xml
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc         0 Mar 14 19:22 boinc_lockfile
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc      2564 Mar 14 19:22 pandaJob.out
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc   1005889 Mar 14 19:22 agis_schedconf.cvmfs.json
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc   1511579 Mar 14 19:22 agis_ddmendpoints.agis.ALL.json
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc       444 Mar 14 19:22 workernode_map.json
[2026-03-14 20:44:38] drwx------. 5 boinc boinc      4096 Mar 14 19:22 pilot3
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc 189553305 Mar 14 20:43 HITS.48955006._045066.pool.root.1
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc       530 Mar 14 20:43 boinc_task_state.xml
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc      1030 Mar 14 20:43 memory_monitor_summary.json
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc    272559 Mar 14 20:43 log.48955006._045066.job.log.tgz.1
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc        95 Mar 14 20:43 pilot_heartbeat.json
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc      6351 Mar 14 20:43 heartbeat.json
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc      8192 Mar 14 20:44 boinc_mmap_file
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc        27 Mar 14 20:44 wrapper_checkpoint.txt
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc      4900 Mar 14 20:44 pilotlog.txt
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc    712309 Mar 14 20:44 log.48955006._045066.job.log.1
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc       357 Mar 14 20:44 output.list
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc       620 Mar 14 20:44 runtime_log
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc   1003520 Mar 14 20:44 result.tar.gz
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc      9221 Mar 14 20:44 runtime_log.err
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc       662 Mar 14 20:44 P2xNDmWOsK9n9Rq4apOajLDm4fhM0noT9bVooX4SDm8ujLDmjW2ytn.diag
[2026-03-14 20:44:38] -rw-r--r--. 1 boinc boinc     22568 Mar 14 20:44 stderr.txt
[2026-03-14 20:44:38] HITS file was successfully produced:
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc 189553305 Mar 14 20:43 shared/HITS.pool.root.1
[2026-03-14 20:44:38]  *** Contents of shared directory: ***
[2026-03-14 20:44:38] total 618784
[2026-03-14 20:44:38] -rw-r--r--. 2 boinc boinc 442451314 Mar 14 19:22 ATLAS.root_0
[2026-03-14 20:44:38] -rw-r--r--. 2 boinc boinc     15845 Mar 14 19:22 start_atlas.sh
[2026-03-14 20:44:38] -rw-r--r--. 2 boinc boinc    597531 Mar 14 19:22 input.tar.gz
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc 189553305 Mar 14 20:43 HITS.pool.root.1
[2026-03-14 20:44:38] -rw-------. 1 boinc boinc   1003520 Mar 14 20:44 result.tar.gz
20:44:39 (55339): run_atlas exited; CPU time 18795.362952
20:44:39 (55339): called boinc_finish(0)

</stderr_txt>
]]>

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