Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:15:00 (959768): wrapper (7.7.26015): starting
06:15:00 (959768): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 06:15:00] Arguments: --nthreads 8
[2026-03-12 06:15:00] Threads: 8
[2026-03-12 06:15:00] Checking for CVMFS
[2026-03-12 06:15:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 06:15:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 06:15:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 06:15:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 06:15:02] 2.13.3.0 17216 182421 860428 157195 3 464 16612741 32935936 52501 16776704 0 2460118882 99.660 2233074383 48046 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-12 06:15:02] CVMFS is ok
[2026-03-12 06:15:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 06:15:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 06:15:02] Further information can be found at the LHC@home message board.
[2026-03-12 06:15:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 06:15:02] Checking for apptainer binary...
[2026-03-12 06:15:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 06:15:02] Running /usr/bin/apptainer --version
[2026-03-12 06:15:02] apptainer version 1.4.5-2.el9
[2026-03-12 06:15:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 06:15:03] c7-9-14.aglt2.org
[2026-03-12 06:15:03] apptainer works
[2026-03-12 06:15:03] Set ATHENA_PROC_NUMBER=8
[2026-03-12 06:15:03] Set ATHENA_CORE_NUMBER=8
[2026-03-12 06:15:03] Starting ATLAS job with PandaID=7037167619
[2026-03-12 06:15:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 07:52:18]  *** The last 200 lines of the pilot log: ***
[2026-03-12 07:52:18]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-12 07:52:18]  is_altstaged=None
[2026-03-12 07:52:18]  is_tar=False
[2026-03-12 07:52:18]  lfn=log.48936143._000182.job.log.tgz.1
[2026-03-12 07:52:18]  mtime=0
[2026-03-12 07:52:18]  protocol_id=None
[2026-03-12 07:52:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 07:52:18]  replicas=None
[2026-03-12 07:52:18]  scope=mc23_13p6TeV
[2026-03-12 07:52:18]  status=None
[2026-03-12 07:52:18]  status_code=0
[2026-03-12 07:52:18]  storage_token=
[2026-03-12 07:52:18]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-7037167619/log.48936143._000182.job.log.tgz.1
[2026-03-12 07:52:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/a7/log.48936143._000182.job.log.tgz.1
[2026-03-12 07:52:18]  workdir=None
[2026-03-12 07:52:18] ]
[2026-03-12 07:52:18] 2026-03-12 11:51:41,352 | INFO     | transferring file log.48936143._000182.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-7037167619/log.48936143._000182.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-12 07:52:18] 2026-03-12 11:51:41,353 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-7037167619/log.48936143._000182.job.log.tgz.1 /tmp/boinchome/slots/2/log.48936143._000182.job
[2026-03-12 07:52:18] 2026-03-12 11:51:41,673 | INFO     | adding to output.list: log.48936143._000182.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/a7/log.48936143._000182.job.log.tg
[2026-03-12 07:52:18] 2026-03-12 11:51:41,673 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 07:52:18] 2026-03-12 11:51:41,673 | INFO     | summary of transferred files:
[2026-03-12 07:52:18] 2026-03-12 11:51:41,673 | INFO     |  -- lfn=log.48936143._000182.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 07:52:18] 2026-03-12 11:51:41,673 | INFO     | stage-out finished correctly
[2026-03-12 07:52:18] 2026-03-12 11:51:41,797 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 07:52:18] 2026-03-12 11:51:43,246 | INFO     | time since job start (5753s) is within the limit (349056.0s)
[2026-03-12 07:52:18] 2026-03-12 11:51:43,501 | INFO     | job 7037167619 has state=finished
[2026-03-12 07:52:18] 2026-03-12 11:51:43,502 | INFO     | preparing for final server update for job 7037167619 in state='finished'
[2026-03-12 07:52:18] 2026-03-12 11:51:43,503 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7037167619/jobReport.json
[2026-03-12 07:52:18] 2026-03-12 11:51:43,504 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-03-12 07:52:18] 2026-03-12 11:51:43,504 | INFO     | this job has now completed (state=finished)
[2026-03-12 07:52:18] 2026-03-12 11:51:43,504 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 07:52:18] 2026-03-12 11:51:43,504 | INFO     | log transfer has been attempted: DONE
[2026-03-12 07:52:18] 2026-03-12 11:51:43,504 | INFO     | job 7037167619 has finished - writing final server update
[2026-03-12 07:52:18] 2026-03-12 11:51:43,504 | INFO     | total number of processed events: 400 (read)
[2026-03-12 07:52:18] 2026-03-12 11:51:43,523 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7037167619/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 07:52:18] 2026-03-12 11:51:43,523 | INFO     | extracted standard info from prmon json
[2026-03-12 07:52:18] 2026-03-12 11:51:43,523 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 07:52:18] 2026-03-12 11:51:43,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 07:52:18] 2026-03-12 11:51:43,523 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 07:52:18] 2026-03-12 11:51:43,523 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 07:52:18] 2026-03-12 11:51:43,524 | INFO     | fitting pss+swap vs Time
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | sum of square deviations: 204163828.0
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | sum of deviations: -39280705.99999991
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | mean x: 1773313527.0
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | mean y: 2564740.2413793104
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | intersect: 343746662.5352242
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | chi2: 0.0011902802640615985
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | current memory leak: -0.19 B/s (using 87 data points, chi2=0.00)
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | could have reported an average CPU frequency of 3800 MHz (7 samples)
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | ..............................
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | . Timing measurements:
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | . get job = 0 s
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | . initial setup = 15 s
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | . payload setup = 17 s
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | . stage-in = 0 s
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | . payload execution = 5715 s
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | . stage-out = 2 s
[2026-03-12 07:52:18] 2026-03-12 11:51:43,525 | INFO     | . log creation = 0 s
[2026-03-12 07:52:18] 2026-03-12 11:51:43,526 | INFO     | ..............................
[2026-03-12 07:52:18] 2026-03-12 11:51:43,582 | INFO     | 
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | job summary report
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | --------------------------------------------------
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | PanDA job id: 7037167619
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | task id: 48936143
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | errors: (none)
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | pilot state: finished 
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | transexitcode: 0
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | exeerrorcode: 0
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | exeerrordiag: 
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | exitcode: 0
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | exitmsg: OK
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | cpuconsumptiontime: 20179 s
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | nevents: 400
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | neventsw: 0
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | pid: 999139
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | pgrp: 999139
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | corecount: 8
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | event service: False
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | sizes: {0: 2280007, 1: 2280241, 11: 2280241, 5737: 2306936, 5740: 2315990, 5742: 2316128}
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | --------------------------------------------------
[2026-03-12 07:52:18] 2026-03-12 11:51:43,583 | INFO     | 
[2026-03-12 07:52:18] 2026-03-12 11:51:43,584 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-03-12 07:52:18] 2026-03-12 11:51:43,682 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,682 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,682 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | job 7037167619 has completed (purged errors)
[2026-03-12 07:52:18] 2026-03-12 11:51:43,683 | INFO     | overall cleanup function is called
[2026-03-12 07:52:18] 2026-03-12 11:51:43,946 | WARNING  | process 999139 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 07:52:18] 2026-03-12 11:51:44,315 | INFO     | using path: /tmp/boinchome/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 07:52:18] 2026-03-12 11:51:44,695 | INFO     | --- collectZombieJob: --- 10, [999139]
[2026-03-12 07:52:18] 2026-03-12 11:51:44,695 | INFO     | zombie collector waiting for pid 999139
[2026-03-12 07:52:18] 2026-03-12 11:51:44,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 07:52:18] 2026-03-12 11:51:44,695 | INFO     | collected zombie processes
[2026-03-12 07:52:18] 2026-03-12 11:51:44,695 | INFO     | will attempt to kill all subprocesses of pid=999139
[2026-03-12 07:52:18] 2026-03-12 11:51:45,163 | INFO     | number of running child processes to parent process 999139: 1
[2026-03-12 07:52:18] 2026-03-12 11:51:45,163 | INFO     | maximum number of monitored processes: 6
[2026-03-12 07:52:18] 2026-03-12 11:51:45,164 | INFO     | aborting job monitoring since job object (job id=7037167619) has expired
[2026-03-12 07:52:18] 2026-03-12 11:51:45,520 | INFO     | process IDs to be killed: [999139] (in reverse order)
[2026-03-12 07:52:18] 2026-03-12 11:51:45,762 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 07:52:18] 2026-03-12 11:51:45,763 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 07:52:18] 2026-03-12 11:51:45,786 | INFO     | did not find any defunct processes belonging to 999139
[2026-03-12 07:52:18] 2026-03-12 11:51:45,806 | INFO     | did not find any defunct processes belonging to 999139
[2026-03-12 07:52:18] 2026-03-12 11:51:45,806 | INFO     | ready for new job
[2026-03-12 07:52:18] 2026-03-12 11:51:45,806 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 07:52:18] 2026-03-12 11:51:45,807 | INFO     | **************************************
[2026-03-12 07:52:18] 2026-03-12 11:51:45,807 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 07:52:18] 2026-03-12 11:51:45,807 | INFO     | **************************************
[2026-03-12 07:52:18] 2026-03-12 11:51:45,807 | INFO     | 
[2026-03-12 07:52:18] 2026-03-12 11:51:45,811 | INFO     | architecture information:
[2026-03-12 07:52:18] 2026-03-12 11:51:45,811 | INFO     | executing command: cat /etc/os-release
[2026-03-12 07:52:18] 2026-03-12 11:51:45,897 | INFO     | cat /etc/os-release:
[2026-03-12 07:52:18] NAME="CentOS Linux"
[2026-03-12 07:52:18] VERSION="7 (Core)"
[2026-03-12 07:52:18] ID="centos"
[2026-03-12 07:52:18] ID_LIKE="rhel fedora"
[2026-03-12 07:52:18] VERSION_ID="7"
[2026-03-12 07:52:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 07:52:18] ANSI_COLOR="0;31"
[2026-03-12 07:52:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 07:52:18] HOME_URL="https://www.centos.org/"
[2026-03-12 07:52:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 07:52:18] 
[2026-03-12 07:52:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 07:52:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 07:52:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 07:52:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 07:52:18] 
[2026-03-12 07:52:18] 2026-03-12 11:51:45,898 | INFO     | **************************************
[2026-03-12 07:52:18] 2026-03-12 11:51:46,401 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-12 07:52:18] 2026-03-12 11:51:46,447 | INFO     | sufficient remaining disk space (70636273664 B)
[2026-03-12 07:52:18] 2026-03-12 11:51:46,448 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 07:52:18] 2026-03-12 11:51:46,449 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 07:52:18] 2026-03-12 11:51:46,449 | INFO     | update_server=False
[2026-03-12 07:52:18] 2026-03-12 11:51:46,449 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 07:52:18] 2026-03-12 11:51:46,450 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 07:52:18] 2026-03-12 11:51:46,450 | INFO     | aborting loop
[2026-03-12 07:52:18] 2026-03-12 11:51:46,574 | INFO     | all payload control threads have been joined
[2026-03-12 07:52:18] 2026-03-12 11:51:46,791 | INFO     | all data control threads have been joined
[2026-03-12 07:52:18] 2026-03-12 11:51:47,318 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 07:52:18] 2026-03-12 11:51:47,455 | INFO     | [job] retrieve thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:47,456 | INFO     | [job] job monitor thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:47,582 | INFO     | [payload] control thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:47,741 | INFO     | [data] copytool_in thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:47,787 | INFO     | all job control threads have been joined
[2026-03-12 07:52:18] 2026-03-12 11:51:47,797 | INFO     | [data] control thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:47,830 | INFO     | [payload] validate_post thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:47,904 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:47,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 07:52:18] 2026-03-12 11:51:48,143 | INFO     | [payload] failed_post thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:48,277 | INFO     | [job] validate thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:48,585 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:48,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 07:52:18] 2026-03-12 11:51:48,768 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:48,793 | INFO     | [job] control thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:49,325 | INFO     | [data] copytool_out thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:49,605 | INFO     | [job] queue monitor thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:51,939 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:51:56,975 | INFO     | job.realtimelogging is not enabled
[2026-03-12 07:52:18] 2026-03-12 11:51:57,981 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 07:52:18] 2026-03-12 11:52:00,397 | INFO     | [monitor] cgroup control has ended
[2026-03-12 07:52:18] 2026-03-12 11:52:02,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139778134869824)>', '<ExcThread(monitor, started 139777781241600)>']
[2026-03-12 07:52:18] 2026-03-12 11:52:07,121 | INFO     | all workflow threads have been joined
[2026-03-12 07:52:18] 2026-03-12 11:52:07,121 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 07:52:18] 2026-03-12 11:52:07,122 | INFO     | traces error code: 0
[2026-03-12 07:52:18] 2026-03-12 11:52:07,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 07:52:18] 2026-03-12 11:52:17,665 | INFO     | PID=971013 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 07:52:18] 2026-03-12 11:52:17,666 | INFO     | .. there are 39 such processes running
[2026-03-12 07:52:18] 2026-03-12 11:52:17,666 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 07:52:18] 2026-03-12 11:52:17,666 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 07:52:18] 2026-03-12 11:52:17,666 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 07:52:18] 2026-03-12 11:52:17,666 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 07:52:18] 2026-03-12 11:52:17,666 | INFO     | [monitor] control thread has ended
[2026-03-12 07:52:18] 2026-03-12 11:52:17,790 [wrapper] ==== pilot stdout END ====
[2026-03-12 07:52:18] 2026-03-12 11:52:17,822 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 07:52:18] 2026-03-12 11:52:17,841 [wrapper] pilotpid: 971013
[2026-03-12 07:52:18] 2026-03-12 11:52:17,857 [wrapper] Pilot exit status: 0
[2026-03-12 07:52:18] 2026-03-12 11:52:18,010 [wrapper] pandaids: 7037167619
[2026-03-12 07:52:18] 2026-03-12 11:52:18,299 [wrapper] cleanup supervisor_pilot 1969946 971014
[2026-03-12 07:52:18] 2026-03-12 11:52:18,303 [wrapper] Test setup, not cleaning
[2026-03-12 07:52:18] 2026-03-12 11:52:18,355 [wrapper] apfmon messages muted
[2026-03-12 07:52:18] 2026-03-12 11:52:18,399 [wrapper] ==== wrapper stdout END ====
[2026-03-12 07:52:18] 2026-03-12 11:52:18,462 [wrapper] ==== wrapper stderr END ====
[2026-03-12 07:52:18]  *** Error codes and diagnostics ***
[2026-03-12 07:52:18]     "exeErrorCode": 0,
[2026-03-12 07:52:18]     "exeErrorDiag": "",
[2026-03-12 07:52:18]     "pilotErrorCode": 0,
[2026-03-12 07:52:18]     "pilotErrorDiag": "",
[2026-03-12 07:52:18]  *** Listing of results directory ***
[2026-03-12 07:52:18] total 439812
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas    584627 Mar  3 23:50 pilot3.tar.gz
[2026-03-12 07:52:18] -rwx------. 1 boincer umatlas     36322 Mar  3 23:53 runpilot2-wrapper.sh
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas      5111 Mar  3 23:53 queuedata.json
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas       100 Mar 12 06:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 07:52:18] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 12 06:14 run_atlas
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas       105 Mar 12 06:14 job.xml
[2026-03-12 07:52:18] -rw-r--r--. 2 boincer umatlas 259614512 Mar 12 06:15 EVNT.48564694._000017.pool.root.1
[2026-03-12 07:52:18] -rw-r--r--. 2 boincer umatlas     15845 Mar 12 06:15 start_atlas.sh
[2026-03-12 07:52:18] drwxrwx--x. 2 boincer umatlas      4096 Mar 12 06:15 shared
[2026-03-12 07:52:18] -rw-r--r--. 2 boincer umatlas    597942 Mar 12 06:15 input.tar.gz
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas         0 Mar 12 06:15 boinc_lockfile
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas      2550 Mar 12 06:15 pandaJob.out
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas        57 Mar 12 06:15 setup.sh.local
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas   1006243 Mar 12 06:15 agis_schedconf.cvmfs.json
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas   1511578 Mar 12 06:15 agis_ddmendpoints.agis.ALL.json
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas       430 Mar 12 06:15 workernode_map.json
[2026-03-12 07:52:18] drwx------. 5 boincer umatlas      4096 Mar 12 06:15 pilot3
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas      7170 Mar 12 07:46 init_data.xml
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas 184581480 Mar 12 07:50 HITS.48936143._000182.pool.root.1
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas       529 Mar 12 07:51 boinc_task_state.xml
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas        95 Mar 12 07:51 pilot_heartbeat.json
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas      1030 Mar 12 07:51 memory_monitor_summary.json
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas    334763 Mar 12 07:51 log.48936143._000182.job.log.tgz.1
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas      6318 Mar 12 07:51 heartbeat.json
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas        27 Mar 12 07:52 wrapper_checkpoint.txt
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas       822 Mar 12 07:52 pilotlog.txt
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas    782168 Mar 12 07:52 log.48936143._000182.job.log.1
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas      8192 Mar 12 07:52 boinc_mmap_file
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas       357 Mar 12 07:52 output.list
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas       620 Mar 12 07:52 runtime_log
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas   1136640 Mar 12 07:52 result.tar.gz
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas      9336 Mar 12 07:52 runtime_log.err
[2026-03-12 07:52:18] -rw-------. 1 boincer umatlas       651 Mar 12 07:52 MiHNDmdPtH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm4PJLDmnSSUnn.diag
[2026-03-12 07:52:18] -rw-r--r--. 1 boincer umatlas     21414 Mar 12 07:52 stderr.txt
[2026-03-12 07:52:19] HITS file was successfully produced:
[2026-03-12 07:52:19] -rw-------. 1 boincer umatlas 184581480 Mar 12 07:50 shared/HITS.pool.root.1
[2026-03-12 07:52:19]  *** Contents of shared directory: ***
[2026-03-12 07:52:19] total 435508
[2026-03-12 07:52:19] -rw-r--r--. 2 boincer umatlas 259614512 Mar 12 06:15 ATLAS.root_0
[2026-03-12 07:52:19] -rw-r--r--. 2 boincer umatlas     15845 Mar 12 06:15 start_atlas.sh
[2026-03-12 07:52:19] -rw-r--r--. 2 boincer umatlas    597942 Mar 12 06:15 input.tar.gz
[2026-03-12 07:52:19] -rw-------. 1 boincer umatlas 184581480 Mar 12 07:50 HITS.pool.root.1
[2026-03-12 07:52:19] -rw-------. 1 boincer umatlas   1136640 Mar 12 07:52 result.tar.gz
07:52:20 (959768): run_atlas exited; CPU time 20324.293872
07:52:20 (959768): called boinc_finish(0)

</stderr_txt>
]]>

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