Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:34:53 (2789241): wrapper (7.7.26015): starting
06:34:53 (2789241): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 06:34:53] Arguments: --nthreads 4
[2026-03-14 06:34:53] Threads: 4
[2026-03-14 06:34:53] Checking for CVMFS
[2026-03-14 06:34:53] No cvmfs_config command found, will try listing directly
[2026-03-14 06:34:53] CVMFS is ok
[2026-03-14 06:34:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 06:34:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 06:34:53] Further information can be found at the LHC@home message board.
[2026-03-14 06:34:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 06:34:53] Checking for apptainer binary...
[2026-03-14 06:34:53] which: no apptainer in ((null))
[2026-03-14 06:34:53] apptainer is not installed, using version from CVMFS
[2026-03-14 06:34:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 06:34:53] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot116/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-14 06:34:53] apptainer works
[2026-03-14 06:34:53] Set ATHENA_PROC_NUMBER=4
[2026-03-14 06:34:53] Set ATHENA_CORE_NUMBER=4
[2026-03-14 06:34:53] Starting ATLAS job with PandaID=7051127975
[2026-03-14 06:34:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot116/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 08:19:34]  *** The last 200 lines of the pilot log: ***
[2026-03-14 08:19:34]  lfn=log.48838605._004753.job.log.tgz.1
[2026-03-14 08:19:34]  mtime=0
[2026-03-14 08:19:34]  protocol_id=None
[2026-03-14 08:19:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-14 08:19:34]  replicas=None
[2026-03-14 08:19:34]  scope=mc23_13p6TeV
[2026-03-14 08:19:34]  status=None
[2026-03-14 08:19:34]  status_code=0
[2026-03-14 08:19:34]  storage_token=
[2026-03-14 08:19:34]  surl=/var/lib/boinc/var/slot116/slots/1/PanDA_Pilot-7051127975/log.48838605._004753.job.log.tgz.1
[2026-03-14 08:19:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/ac/log.48838605._004753.job.log.tgz.1
[2026-03-14 08:19:34]  workdir=None
[2026-03-14 08:19:34] ]
[2026-03-14 08:19:34] 2026-03-14 07:16:04,638 | INFO     | transferring file log.48838605._004753.job.log.tgz.1 from /var/lib/boinc/var/slot116/slots/1/PanDA_Pilot-7051127975/log.48838605._004753.job.log.tgz.1 to /var/lib/
[2026-03-14 08:19:34] 2026-03-14 07:16:04,639 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot116/slots/1/PanDA_Pilot-7051127975/log.48838605._004753.job.log.tgz.1 /var/lib/boinc/var/slot116/slots/1/
[2026-03-14 08:19:34] 2026-03-14 07:16:04,655 | INFO     | adding to output.list: log.48838605._004753.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/ac/log.48838605._004753.job.log.tg
[2026-03-14 08:19:34] 2026-03-14 07:16:04,655 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 08:19:34] 2026-03-14 07:16:04,655 | INFO     | summary of transferred files:
[2026-03-14 08:19:34] 2026-03-14 07:16:04,655 | INFO     |  -- lfn=log.48838605._004753.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 08:19:34] 2026-03-14 07:16:04,656 | INFO     | stage-out finished correctly
[2026-03-14 08:19:34] 2026-03-14 07:16:04,707 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 08:19:34] 2026-03-14 07:16:04,732 | INFO     | time since job start (6057s) is within the limit (345600.0s)
[2026-03-14 08:19:34] 2026-03-14 07:16:06,249 | INFO     | job 7051127975 has state=finished
[2026-03-14 08:19:34] 2026-03-14 07:16:06,254 | INFO     | preparing for final server update for job 7051127975 in state='finished'
[2026-03-14 08:19:34] 2026-03-14 07:16:06,255 | INFO     | reading metadata from: /var/lib/boinc/var/slot116/slots/1/PanDA_Pilot-7051127975/jobReport.json
[2026-03-14 08:19:34] 2026-03-14 07:16:06,257 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot116/slots/1/workernode_map.json
[2026-03-14 08:19:34] 2026-03-14 07:16:06,257 | INFO     | this job has now completed (state=finished)
[2026-03-14 08:19:34] 2026-03-14 07:16:06,257 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 08:19:34] 2026-03-14 07:16:06,257 | INFO     | log transfer has been attempted: DONE
[2026-03-14 08:19:34] 2026-03-14 07:16:06,257 | INFO     | job 7051127975 has finished - writing final server update
[2026-03-14 08:19:34] 2026-03-14 07:16:06,258 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1508225/.job.ad'
[2026-03-14 08:19:34] 2026-03-14 07:16:06,258 | INFO     | total number of processed events: 400 (read)
[2026-03-14 08:19:34] 2026-03-14 07:16:06,284 | INFO     | using path: /var/lib/boinc/var/slot116/slots/1/PanDA_Pilot-7051127975/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 08:19:34] 2026-03-14 07:16:06,284 | INFO     | extracted standard info from prmon json
[2026-03-14 08:19:34] 2026-03-14 07:16:06,284 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 08:19:34] 2026-03-14 07:16:06,284 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 08:19:34] 2026-03-14 07:16:06,284 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 08:19:34] 2026-03-14 07:16:06,285 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 08:19:34] 2026-03-14 07:16:06,286 | INFO     | fitting pss+swap vs Time
[2026-03-14 08:19:34] 2026-03-14 07:16:06,286 | INFO     | sum of square deviations: 241429643.0
[2026-03-14 08:19:34] 2026-03-14 07:16:06,286 | INFO     | sum of deviations: -184447377.5
[2026-03-14 08:19:34] 2026-03-14 07:16:06,286 | INFO     | mean x: 1773469608.5
[2026-03-14 08:19:34] 2026-03-14 07:16:06,286 | INFO     | mean y: 2356900.25
[2026-03-14 08:19:34] 2026-03-14 07:16:06,286 | INFO     | intersect: 1357251909.4091558
[2026-03-14 08:19:34] 2026-03-14 07:16:06,286 | INFO     | chi2: 0.0004096293418535067
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | current memory leak: -0.76 B/s (using 92 data points, chi2=0.00)
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | could have reported an average CPU frequency of 3576 MHz (7 samples)
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | ..............................
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | . Timing measurements:
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | . get job = 0 s
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | . initial setup = 5 s
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | . payload setup = 5 s
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | . stage-in = 0 s
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | . payload execution = 6036 s
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | . stage-out = 0 s
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | . log creation = 0 s
[2026-03-14 08:19:34] 2026-03-14 07:16:06,287 | INFO     | ..............................
[2026-03-14 08:19:34] 2026-03-14 07:16:06,411 | INFO     | PID=2793806 has CPU usage=10.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-14 08:19:34] 2026-03-14 07:16:06,412 | INFO     | .. there are 47 such processes running
[2026-03-14 08:19:34] 2026-03-14 07:16:06,590 | INFO     | 
[2026-03-14 08:19:34] 2026-03-14 07:16:06,590 | INFO     | job summary report
[2026-03-14 08:19:34] 2026-03-14 07:16:06,590 | INFO     | --------------------------------------------------
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | PanDA job id: 7051127975
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | task id: 48838605
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | errors: (none)
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | pilot state: finished 
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | transexitcode: 0
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | exeerrorcode: 0
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | exeerrordiag: 
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | exitcode: 0
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | exitmsg: OK
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | cpuconsumptiontime: 22960 s
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | nevents: 400
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | neventsw: 0
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | pid: 2799983
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | pgrp: 2799983
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | corecount: 4
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | event service: False
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | sizes: {0: 2279763, 1: 2280167, 11: 2280167, 6045: 2307034, 6046: 2316111, 6048: 2316249}
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | --------------------------------------------------
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | 
[2026-03-14 08:19:34] 2026-03-14 07:16:06,591 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot116/slots/1
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 08:19:34] 2026-03-14 07:16:06,614 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,615 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 08:19:34] 2026-03-14 07:16:06,615 | INFO     | job 7051127975 has completed (purged errors)
[2026-03-14 08:19:34] 2026-03-14 07:16:06,615 | INFO     | overall cleanup function is called
[2026-03-14 08:19:34] 2026-03-14 07:16:07,622 | INFO     | --- collectZombieJob: --- 10, [2799983]
[2026-03-14 08:19:34] 2026-03-14 07:16:07,622 | INFO     | zombie collector waiting for pid 2799983
[2026-03-14 08:19:34] 2026-03-14 07:16:07,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 08:19:34] 2026-03-14 07:16:07,622 | INFO     | collected zombie processes
[2026-03-14 08:19:34] 2026-03-14 07:16:07,622 | INFO     | will attempt to kill all subprocesses of pid=2799983
[2026-03-14 08:19:34] 2026-03-14 07:16:07,949 | WARNING  | process 2799983 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 08:19:34] 2026-03-14 07:16:08,808 | INFO     | using path: /var/lib/boinc/var/slot116/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 08:19:34] 2026-03-14 07:16:08,916 | INFO     | process IDs to be killed: [2799983] (in reverse order)
[2026-03-14 08:19:34] 2026-03-14 07:16:09,155 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 08:19:34] 2026-03-14 07:16:09,156 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 08:19:34] 2026-03-14 07:16:09,220 | INFO     | did not find any defunct processes belonging to 2799983
[2026-03-14 08:19:34] 2026-03-14 07:16:09,285 | INFO     | did not find any defunct processes belonging to 2799983
[2026-03-14 08:19:34] 2026-03-14 07:16:09,286 | INFO     | ready for new job
[2026-03-14 08:19:34] 2026-03-14 07:16:09,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 08:19:34] 2026-03-14 07:16:09,287 | INFO     | **************************************
[2026-03-14 08:19:34] 2026-03-14 07:16:09,287 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 08:19:34] 2026-03-14 07:16:09,287 | INFO     | **************************************
[2026-03-14 08:19:34] 2026-03-14 07:16:09,287 | INFO     | 
[2026-03-14 08:19:34] 2026-03-14 07:16:09,295 | INFO     | architecture information:
[2026-03-14 08:19:34] 2026-03-14 07:16:09,296 | INFO     | executing command: cat /etc/os-release
[2026-03-14 08:19:34] 2026-03-14 07:16:09,313 | INFO     | cat /etc/os-release:
[2026-03-14 08:19:34] NAME="CentOS Linux"
[2026-03-14 08:19:34] VERSION="7 (Core)"
[2026-03-14 08:19:34] ID="centos"
[2026-03-14 08:19:34] ID_LIKE="rhel fedora"
[2026-03-14 08:19:34] VERSION_ID="7"
[2026-03-14 08:19:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 08:19:34] ANSI_COLOR="0;31"
[2026-03-14 08:19:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 08:19:34] HOME_URL="https://www.centos.org/"
[2026-03-14 08:19:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 08:19:34] 
[2026-03-14 08:19:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 08:19:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 08:19:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 08:19:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 08:19:34] 
[2026-03-14 08:19:34] 2026-03-14 07:16:09,313 | INFO     | **************************************
[2026-03-14 08:19:34] 2026-03-14 07:16:09,477 | INFO     | number of running child processes to parent process 2799983: 1
[2026-03-14 08:19:34] 2026-03-14 07:16:09,478 | INFO     | maximum number of monitored processes: 6
[2026-03-14 08:19:34] 2026-03-14 07:16:09,478 | INFO     | aborting job monitoring since job object (job id=7051127975) has expired
[2026-03-14 08:19:34] 2026-03-14 07:16:09,817 | INFO     | executing command: df -mP /var/lib/boinc/var/slot116/slots/1
[2026-03-14 08:19:34] 2026-03-14 07:16:09,837 | INFO     | sufficient remaining disk space (20132659200 B)
[2026-03-14 08:19:34] 2026-03-14 07:16:09,837 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 08:19:34] 2026-03-14 07:16:09,837 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 08:19:34] 2026-03-14 07:16:09,837 | INFO     | update_server=False
[2026-03-14 08:19:34] 2026-03-14 07:16:09,837 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 08:19:34] 2026-03-14 07:16:09,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 08:19:34] 2026-03-14 07:16:09,838 | INFO     | will abort loop
[2026-03-14 08:19:34] 2026-03-14 07:16:10,226 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 08:19:34] 2026-03-14 07:16:10,272 | INFO     | all data control threads have been joined
[2026-03-14 08:19:34] 2026-03-14 07:16:10,707 | INFO     | all job control threads have been joined
[2026-03-14 08:19:34] 2026-03-14 07:16:10,770 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 08:19:34] 2026-03-14 07:16:10,843 | INFO     | [job] job monitor thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:10,844 | INFO     | [job] retrieve thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:11,278 | INFO     | [data] control thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:11,306 | INFO     | all payload control threads have been joined
[2026-03-14 08:19:34] 2026-03-14 07:16:11,334 | INFO     | [job] validate thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:11,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 08:19:34] 2026-03-14 07:16:11,377 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:11,519 | INFO     | [payload] validate_post thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:11,534 | INFO     | [payload] failed_post thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:11,569 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:11,709 | INFO     | [data] copytool_in thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:11,712 | INFO     | [job] control thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:12,053 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:12,232 | INFO     | [data] copytool_out thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:12,311 | INFO     | [payload] control thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:12,370 | INFO     | [job] queue monitor thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:14,775 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:17,103 | INFO     | [monitor] cgroup control has ended
[2026-03-14 08:19:34] 2026-03-14 07:16:20,504 | INFO     | job.realtimelogging is not enabled
[2026-03-14 08:19:34] 2026-03-14 07:16:21,510 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 08:19:34] 2026-03-14 07:16:22,721 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22880205842240)>', '<ExcThread(monitor, started 22879894763264)>']
[2026-03-14 08:19:34] 2026-03-14 07:16:27,747 | INFO     | all workflow threads have been joined
[2026-03-14 08:19:34] 2026-03-14 07:16:27,747 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 08:19:34] 2026-03-14 07:16:27,747 | INFO     | traces error code: 0
[2026-03-14 08:19:34] 2026-03-14 07:16:27,748 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 08:19:34] 2026-03-14 07:16:39,080 | INFO     | PID=2793806 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 08:19:34] 2026-03-14 07:16:39,080 | INFO     | .. there are 46 such processes running
[2026-03-14 08:19:34] 2026-03-14 07:16:39,081 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 08:19:34] 2026-03-14 07:16:39,081 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 08:19:34] 2026-03-14 07:16:39,081 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 08:19:34] 2026-03-14 07:16:39,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 08:19:34] 2026-03-14 07:16:39,081 | INFO     | [monitor] control thread has ended
[2026-03-14 08:19:34] 2026-03-14 07:16:39,288 [wrapper] ==== pilot stdout END ====
[2026-03-14 08:19:34] 2026-03-14 07:16:39,291 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 08:19:34] 2026-03-14 07:16:39,293 [wrapper] pilotpid: 2793806
[2026-03-14 08:19:34] 2026-03-14 07:16:39,299 [wrapper] Pilot exit status: 0
[2026-03-14 08:19:34] 2026-03-14 07:16:39,306 [wrapper] pandaids: 7051127975
[2026-03-14 08:19:34] 2026-03-14 07:16:39,437 [wrapper] cleanup supervisor_pilot 3534086 2793807
[2026-03-14 08:19:34] 2026-03-14 07:16:39,439 [wrapper] Test setup, not cleaning
[2026-03-14 08:19:34] 2026-03-14 07:16:39,441 [wrapper] apfmon messages muted
[2026-03-14 08:19:34] 2026-03-14 07:16:39,442 [wrapper] ==== wrapper stdout END ====
[2026-03-14 08:19:34] 2026-03-14 07:16:39,443 [wrapper] ==== wrapper stderr END ====
[2026-03-14 08:19:34]  *** Error codes and diagnostics ***
[2026-03-14 08:19:34]     "exeErrorCode": 0,
[2026-03-14 08:19:34]     "exeErrorDiag": "",
[2026-03-14 08:19:34]     "pilotErrorCode": 0,
[2026-03-14 08:19:34]     "pilotErrorDiag": "",
[2026-03-14 08:19:34]  *** Listing of results directory ***
[2026-03-14 08:19:34] total 494692
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc      5111 Mar 12 05:15 queuedata.json
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc    585013 Mar 12 05:15 pilot3.tar.gz
[2026-03-14 08:19:34] -rwx------. 1 boinc boinc     36322 Mar 12 05:16 runpilot2-wrapper.sh
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc       100 Mar 14 06:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 08:19:34] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 06:34 run_atlas
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc       105 Mar 14 06:34 job.xml
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc      6709 Mar 14 06:34 init_data.xml
[2026-03-14 08:19:34] -rw-r--r--. 2 boinc boinc 281204701 Mar 14 06:34 EVNT.48343768._000006.pool.root.1
[2026-03-14 08:19:34] -rw-r--r--. 2 boinc boinc     15845 Mar 14 06:34 start_atlas.sh
[2026-03-14 08:19:34] drwxrwx--x. 2 boinc boinc      4096 Mar 14 06:34 shared
[2026-03-14 08:19:34] -rw-r--r--. 2 boinc boinc    597529 Mar 14 06:34 input.tar.gz
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc         0 Mar 14 06:34 boinc_lockfile
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc      2558 Mar 14 06:34 pandaJob.out
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc   1004571 Mar 14 06:35 agis_schedconf.cvmfs.json
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc   1511579 Mar 14 06:35 agis_ddmendpoints.agis.ALL.json
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc       444 Mar 14 06:35 workernode_map.json
[2026-03-14 08:19:34] drwx------. 5 boinc boinc      4096 Mar 14 06:35 pilot3
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc 219124477 Mar 14 08:15 HITS.48838605._004753.pool.root.1
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc        95 Mar 14 08:15 pilot_heartbeat.json
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc       529 Mar 14 08:15 boinc_task_state.xml
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc      1029 Mar 14 08:16 memory_monitor_summary.json
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc    282338 Mar 14 08:16 log.48838605._004753.job.log.tgz.1
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc      6351 Mar 14 08:16 heartbeat.json
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc       823 Mar 14 08:16 pilotlog.txt
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc    870273 Mar 14 08:16 log.48838605._004753.job.log.1
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc       357 Mar 14 08:16 output.list
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc       620 Mar 14 08:16 runtime_log
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc   1167360 Mar 14 08:16 result.tar.gz
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc      9221 Mar 14 08:16 runtime_log.err
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc       663 Mar 14 08:16 KYfNDmTemK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmMvlLDmrlUHYo.diag
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc        27 Mar 14 08:19 wrapper_checkpoint.txt
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc      8192 Mar 14 08:19 boinc_mmap_file
[2026-03-14 08:19:34] -rw-r--r--. 1 boinc boinc     21593 Mar 14 08:19 stderr.txt
[2026-03-14 08:19:34] HITS file was successfully produced:
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc 219124477 Mar 14 08:15 shared/HITS.pool.root.1
[2026-03-14 08:19:34]  *** Contents of shared directory: ***
[2026-03-14 08:19:34] total 490356
[2026-03-14 08:19:34] -rw-r--r--. 2 boinc boinc 281204701 Mar 14 06:34 ATLAS.root_0
[2026-03-14 08:19:34] -rw-r--r--. 2 boinc boinc     15845 Mar 14 06:34 start_atlas.sh
[2026-03-14 08:19:34] -rw-r--r--. 2 boinc boinc    597529 Mar 14 06:34 input.tar.gz
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc 219124477 Mar 14 08:15 HITS.pool.root.1
[2026-03-14 08:19:34] -rw-------. 1 boinc boinc   1167360 Mar 14 08:16 result.tar.gz
08:19:35 (2789241): run_atlas exited; CPU time 23250.047167
08:19:35 (2789241): called boinc_finish(0)

</stderr_txt>
]]>

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