Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
16:29:41 (233444): wrapper (7.7.26015): starting
16:29:41 (233444): wrapper: running run_atlas (--nthreads 12)
[2026-03-12 16:29:41] Arguments: --nthreads 12
[2026-03-12 16:29:41] Threads: 12
[2026-03-12 16:29:41] Checking for CVMFS
[2026-03-12 16:29:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 16:29:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 16:29:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 16:29:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 16:29:42] 2.12.7.0 4877 214 57524 157214 2 188 4170588 4194304 2742 130560 0 537026 99.998 6919 1384 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-03-12 16:29:42] CVMFS is ok
[2026-03-12 16:29:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 16:29:42] Checking for apptainer binary...
[2026-03-12 16:29:42] apptainer is not installed, using version from CVMFS
[2026-03-12 16:29:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 16:29:42] Trebeth
[2026-03-12 16:29:42] apptainer works
[2026-03-12 16:29:42] Set ATHENA_PROC_NUMBER=12
[2026-03-12 16:29:42] Set ATHENA_CORE_NUMBER=12
[2026-03-12 16:29:42] Starting ATLAS job with PandaID=7037167593
[2026-03-12 16:29:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 17:23:05]  *** The last 200 lines of the pilot log: ***
[2026-03-12 17:23:05]  filesize=356286
[2026-03-12 17:23:05]  filetype=log
[2026-03-12 17:23:05]  guid=fd3122d0-fc42-4875-81fa-77445b5ce770
[2026-03-12 17:23:05]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-12 17:23:05]  is_altstaged=None
[2026-03-12 17:23:05]  is_tar=False
[2026-03-12 17:23:05]  lfn=log.48936143._000156.job.log.tgz.1
[2026-03-12 17:23:05]  mtime=0
[2026-03-12 17:23:05]  protocol_id=None
[2026-03-12 17:23:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 17:23:05]  replicas=None
[2026-03-12 17:23:05]  scope=mc23_13p6TeV
[2026-03-12 17:23:05]  status=None
[2026-03-12 17:23:05]  status_code=0
[2026-03-12 17:23:05]  storage_token=
[2026-03-12 17:23:05]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-7037167593/log.48936143._000156.job.log.tgz.1
[2026-03-12 17:23:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/1d/log.48936143._000156.job.log.tgz.1
[2026-03-12 17:23:05]  workdir=None
[2026-03-12 17:23:05] ]
[2026-03-12 17:23:05] 2026-03-12 21:22:17,425 | INFO     | transferring file log.48936143._000156.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-7037167593/log.48936143._000156.job.log.tgz.1 to /var/lib/boinc
[2026-03-12 17:23:05] 2026-03-12 21:22:17,425 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-7037167593/log.48936143._000156.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.489361
[2026-03-12 17:23:05] 2026-03-12 21:22:17,440 | INFO     | adding to output.list: log.48936143._000156.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/1d/log.48936143._000156.job.log.tg
[2026-03-12 17:23:05] 2026-03-12 21:22:17,441 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 17:23:05] 2026-03-12 21:22:17,441 | INFO     | summary of transferred files:
[2026-03-12 17:23:05] 2026-03-12 21:22:17,441 | INFO     |  -- lfn=log.48936143._000156.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 17:23:05] 2026-03-12 21:22:17,441 | INFO     | stage-out finished correctly
[2026-03-12 17:23:05] 2026-03-12 21:22:18,586 | INFO     | time since job start (3144s) is within the limit (349056.0s)
[2026-03-12 17:23:05] 2026-03-12 21:22:19,258 | INFO     | monitor loop #238: job 0:7037167593 is in state 'finished'
[2026-03-12 17:23:05] 2026-03-12 21:22:19,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 17:23:05] 2026-03-12 21:22:19,724 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 17:23:05] 2026-03-12 21:22:20,592 | INFO     | time since job start (3146s) is within the limit (349056.0s)
[2026-03-12 17:23:05] 2026-03-12 21:22:20,972 | INFO     | job 7037167593 has state=finished
[2026-03-12 17:23:05] 2026-03-12 21:22:20,972 | INFO     | preparing for final server update for job 7037167593 in state='finished'
[2026-03-12 17:23:05] 2026-03-12 21:22:20,972 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-7037167593/jobReport.json
[2026-03-12 17:23:05] 2026-03-12 21:22:20,975 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-03-12 17:23:05] 2026-03-12 21:22:20,975 | INFO     | this job has now completed (state=finished)
[2026-03-12 17:23:05] 2026-03-12 21:22:20,975 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 17:23:05] 2026-03-12 21:22:20,975 | INFO     | log transfer has been attempted: DONE
[2026-03-12 17:23:05] 2026-03-12 21:22:20,975 | INFO     | job 7037167593 has finished - writing final server update
[2026-03-12 17:23:05] 2026-03-12 21:22:20,976 | INFO     | total number of processed events: 400 (read)
[2026-03-12 17:23:05] 2026-03-12 21:22:21,003 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-7037167593/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 17:23:05] 2026-03-12 21:22:21,004 | INFO     | extracted standard info from prmon json
[2026-03-12 17:23:05] 2026-03-12 21:22:21,004 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 17:23:05] 2026-03-12 21:22:21,004 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 17:23:05] 2026-03-12 21:22:21,004 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 17:23:05] 2026-03-12 21:22:21,004 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 17:23:05] 2026-03-12 21:22:21,006 | INFO     | fitting pss+swap vs Time
[2026-03-12 17:23:05] 2026-03-12 21:22:21,006 | INFO     | sum of square deviations: 28242390.0
[2026-03-12 17:23:05] 2026-03-12 21:22:21,006 | INFO     | sum of deviations: 1823610982.0
[2026-03-12 17:23:05] 2026-03-12 21:22:21,006 | INFO     | mean x: 1773349061.0
[2026-03-12 17:23:05] 2026-03-12 21:22:21,006 | INFO     | mean y: 2794908.4
[2026-03-12 17:23:05] 2026-03-12 21:22:21,007 | INFO     | intersect: -114502345150.88634
[2026-03-12 17:23:05] 2026-03-12 21:22:21,007 | INFO     | chi2: 0.11993327978975807
[2026-03-12 17:23:05] 2026-03-12 21:22:21,007 | INFO     | current memory leak: 64.57 B/s (using 45 data points, chi2=0.12)
[2026-03-12 17:23:05] 2026-03-12 21:22:21,007 | INFO     | could have reported an average CPU frequency of 1951 MHz (5 samples)
[2026-03-12 17:23:05] 2026-03-12 21:22:21,007 | INFO     | ..............................
[2026-03-12 17:23:05] 2026-03-12 21:22:21,007 | INFO     | . Timing measurements:
[2026-03-12 17:23:05] 2026-03-12 21:22:21,008 | INFO     | . get job = 0 s
[2026-03-12 17:23:05] 2026-03-12 21:22:21,008 | INFO     | . initial setup = 5 s
[2026-03-12 17:23:05] 2026-03-12 21:22:21,008 | INFO     | . payload setup = 4 s
[2026-03-12 17:23:05] 2026-03-12 21:22:21,008 | INFO     | . stage-in = 0 s
[2026-03-12 17:23:05] 2026-03-12 21:22:21,008 | INFO     | . payload execution = 3121 s
[2026-03-12 17:23:05] 2026-03-12 21:22:21,008 | INFO     | . stage-out = 0 s
[2026-03-12 17:23:05] 2026-03-12 21:22:21,008 | INFO     | . log creation = 0 s
[2026-03-12 17:23:05] 2026-03-12 21:22:21,008 | INFO     | ..............................
[2026-03-12 17:23:05] 2026-03-12 21:22:21,091 | INFO     | 
[2026-03-12 17:23:05] 2026-03-12 21:22:21,091 | INFO     | job summary report
[2026-03-12 17:23:05] 2026-03-12 21:22:21,091 | INFO     | --------------------------------------------------
[2026-03-12 17:23:05] 2026-03-12 21:22:21,091 | INFO     | PanDA job id: 7037167593
[2026-03-12 17:23:05] 2026-03-12 21:22:21,091 | INFO     | task id: 48936143
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | errors: (none)
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | pilot state: finished 
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | transexitcode: 0
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | exeerrorcode: 0
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | exeerrordiag: 
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | exitcode: 0
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | exitmsg: OK
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | cpuconsumptiontime: 32071 s
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | nevents: 400
[2026-03-12 17:23:05] 2026-03-12 21:22:21,092 | INFO     | neventsw: 0
[2026-03-12 17:23:05] 2026-03-12 21:22:21,093 | INFO     | pid: 242394
[2026-03-12 17:23:05] 2026-03-12 21:22:21,093 | INFO     | pgrp: 242394
[2026-03-12 17:23:05] 2026-03-12 21:22:21,093 | INFO     | corecount: 12
[2026-03-12 17:23:05] 2026-03-12 21:22:21,093 | INFO     | event service: False
[2026-03-12 17:23:05] 2026-03-12 21:22:21,093 | INFO     | sizes: {0: 2279787, 1: 2280248, 11: 2280248, 3129: 2305719, 3130: 2305718, 3132: 2314786, 3134: 2314970, 3135: 2315196}
[2026-03-12 17:23:05] 2026-03-12 21:22:21,093 | INFO     | --------------------------------------------------
[2026-03-12 17:23:05] 2026-03-12 21:22:21,093 | INFO     | 
[2026-03-12 17:23:05] 2026-03-12 21:22:21,093 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-03-12 17:23:05] 2026-03-12 21:22:21,112 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,112 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,112 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,112 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,113 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,113 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,113 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,113 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,113 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,113 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,113 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,113 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,113 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,113 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,114 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,114 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,114 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 17:23:05] 2026-03-12 21:22:21,114 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,114 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 17:23:05] 2026-03-12 21:22:21,114 | INFO     | job 7037167593 has completed (purged errors)
[2026-03-12 17:23:05] 2026-03-12 21:22:21,115 | INFO     | overall cleanup function is called
[2026-03-12 17:23:05] 2026-03-12 21:22:22,122 | INFO     | --- collectZombieJob: --- 10, [242394]
[2026-03-12 17:23:05] 2026-03-12 21:22:22,123 | INFO     | zombie collector waiting for pid 242394
[2026-03-12 17:23:05] 2026-03-12 21:22:22,123 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 17:23:05] 2026-03-12 21:22:22,123 | INFO     | collected zombie processes
[2026-03-12 17:23:05] 2026-03-12 21:22:22,123 | INFO     | will attempt to kill all subprocesses of pid=242394
[2026-03-12 17:23:05] 2026-03-12 21:22:22,345 | INFO     | process IDs to be killed: [242394] (in reverse order)
[2026-03-12 17:23:05] 2026-03-12 21:22:22,413 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 17:23:05] 2026-03-12 21:22:22,413 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 17:23:05] 2026-03-12 21:22:22,419 | INFO     | did not find any defunct processes belonging to 242394
[2026-03-12 17:23:05] 2026-03-12 21:22:22,423 | INFO     | did not find any defunct processes belonging to 242394
[2026-03-12 17:23:05] 2026-03-12 21:22:22,423 | INFO     | ready for new job
[2026-03-12 17:23:05] 2026-03-12 21:22:22,424 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 17:23:05] 2026-03-12 21:22:22,425 | INFO     | **************************************
[2026-03-12 17:23:05] 2026-03-12 21:22:22,425 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 17:23:05] 2026-03-12 21:22:22,425 | INFO     | **************************************
[2026-03-12 17:23:05] 2026-03-12 21:22:22,425 | INFO     | 
[2026-03-12 17:23:05] 2026-03-12 21:22:22,449 | INFO     | architecture information:
[2026-03-12 17:23:05] 2026-03-12 21:22:22,450 | INFO     | executing command: cat /etc/os-release
[2026-03-12 17:23:05] 2026-03-12 21:22:22,462 | INFO     | cat /etc/os-release:
[2026-03-12 17:23:05] NAME="CentOS Linux"
[2026-03-12 17:23:05] VERSION="7 (Core)"
[2026-03-12 17:23:05] ID="centos"
[2026-03-12 17:23:05] ID_LIKE="rhel fedora"
[2026-03-12 17:23:05] VERSION_ID="7"
[2026-03-12 17:23:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 17:23:05] ANSI_COLOR="0;31"
[2026-03-12 17:23:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 17:23:05] HOME_URL="https://www.centos.org/"
[2026-03-12 17:23:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 17:23:05] 
[2026-03-12 17:23:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 17:23:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 17:23:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 17:23:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 17:23:05] 
[2026-03-12 17:23:05] 2026-03-12 21:22:22,462 | INFO     | **************************************
[2026-03-12 17:23:05] 2026-03-12 21:22:22,965 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-03-12 17:23:05] 2026-03-12 21:22:22,980 | INFO     | sufficient remaining disk space (397104119808 B)
[2026-03-12 17:23:05] 2026-03-12 21:22:22,981 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 17:23:05] 2026-03-12 21:22:22,981 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 17:23:05] 2026-03-12 21:22:22,981 | INFO     | update_server=False
[2026-03-12 17:23:05] 2026-03-12 21:22:22,981 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 17:23:05] 2026-03-12 21:22:22,982 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 17:23:05] 2026-03-12 21:22:22,982 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 17:23:05] 2026-03-12 21:22:22,982 | INFO     | aborting loop
[2026-03-12 17:23:05] 2026-03-12 21:22:23,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 17:23:05] 2026-03-12 21:22:23,493 | INFO     | all job control threads have been joined
[2026-03-12 17:23:05] 2026-03-12 21:22:23,793 | INFO     | all payload control threads have been joined
[2026-03-12 17:23:05] 2026-03-12 21:22:23,986 | INFO     | [job] queue monitor thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:23,986 | INFO     | [job] job monitor thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:23,987 | INFO     | [job] retrieve thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:24,002 | INFO     | all data control threads have been joined
[2026-03-12 17:23:05] 2026-03-12 21:22:24,070 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:24,173 | INFO     | [payload] validate_post thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:24,494 | INFO     | [job] control thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:24,735 | INFO     | [payload] failed_post thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:24,799 | INFO     | [payload] control thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:24,920 | INFO     | [job] validate thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:25,006 | INFO     | [data] control thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:25,049 | INFO     | [data] copytool_out thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:25,091 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:25,194 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:25,333 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:25,478 | INFO     | [data] copytool_in thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:25,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 17:23:05] 2026-03-12 21:22:29,818 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 17:23:05] 2026-03-12 21:22:53,941 | INFO     | PID=237636 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 17:23:05] 2026-03-12 21:22:53,941 | INFO     | .. there are 4 such processes running
[2026-03-12 17:23:05] 2026-03-12 21:22:53,942 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 17:23:05] 2026-03-12 21:22:53,942 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 17:23:05] 2026-03-12 21:22:53,943 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 17:23:05] 2026-03-12 21:22:59,602 | INFO     | [monitor] cgroup control has ended
[2026-03-12 17:23:05] 2026-03-12 21:23:00,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139844470245184)>', '<ExcThread(monitor, started 139844160300800)>']
[2026-03-12 17:23:05] 2026-03-12 21:23:00,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 17:23:05] 2026-03-12 21:23:00,974 | INFO     | [monitor] control thread has ended
[2026-03-12 17:23:05] 2026-03-12 21:23:05,633 | INFO     | all workflow threads have been joined
[2026-03-12 17:23:05] 2026-03-12 21:23:05,634 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 17:23:05] 2026-03-12 21:23:05,634 | INFO     | traces error code: 0
[2026-03-12 17:23:05] 2026-03-12 21:23:05,634 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 17:23:05] 2026-03-12 21:23:05,736 [wrapper] ==== pilot stdout END ====
[2026-03-12 17:23:05] 2026-03-12 21:23:05,739 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 17:23:05] 2026-03-12 21:23:05,741 [wrapper] pilotpid: 237636
[2026-03-12 17:23:05] 2026-03-12 21:23:05,743 [wrapper] Pilot exit status: 0
[2026-03-12 17:23:05] 2026-03-12 21:23:05,750 [wrapper] pandaids: 7037167593
[2026-03-12 17:23:05] 2026-03-12 21:23:05,793 [wrapper] cleanup supervisor_pilot  283242 237637
[2026-03-12 17:23:05] 2026-03-12 21:23:05,795 [wrapper] Test setup, not cleaning
[2026-03-12 17:23:05] 2026-03-12 21:23:05,797 [wrapper] apfmon messages muted
[2026-03-12 17:23:05] 2026-03-12 21:23:05,799 [wrapper] ==== wrapper stdout END ====
[2026-03-12 17:23:05] 2026-03-12 21:23:05,801 [wrapper] ==== wrapper stderr END ====
[2026-03-12 17:23:05]  *** Error codes and diagnostics ***
[2026-03-12 17:23:05]     "exeErrorCode": 0,
[2026-03-12 17:23:05]     "exeErrorDiag": "",
[2026-03-12 17:23:05]     "pilotErrorCode": 0,
[2026-03-12 17:23:05]     "pilotErrorDiag": "",
[2026-03-12 17:23:05]  *** Listing of results directory ***
[2026-03-12 17:23:05] total 431624
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc    584627 Mar  3 23:50 pilot3.tar.gz
[2026-03-12 17:23:05] -rwx------ 1 boinc boinc     36322 Mar  3 23:53 runpilot2-wrapper.sh
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc      5111 Mar  3 23:53 queuedata.json
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc       100 Mar 12 16:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 17:23:05] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 16:29 run_atlas
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc       105 Mar 12 16:29 job.xml
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc      7579 Mar 12 16:29 init_data.xml
[2026-03-12 17:23:05] -rw-r--r-- 2 boinc boinc 256359316 Mar 12 16:29 EVNT.48564694._000016.pool.root.1
[2026-03-12 17:23:05] -rw-r--r-- 2 boinc boinc     15845 Mar 12 16:29 start_atlas.sh
[2026-03-12 17:23:05] drwxrwx--x 2 boinc boinc      4096 Mar 12 16:29 shared
[2026-03-12 17:23:05] -rw-r--r-- 2 boinc boinc    597945 Mar 12 16:29 input.tar.gz
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc         0 Mar 12 16:29 boinc_lockfile
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc      2550 Mar 12 16:29 pandaJob.out
[2026-03-12 17:23:05] -rw------- 1 boinc boinc        50 Mar 12 16:29 setup.sh.local
[2026-03-12 17:23:05] -rw------- 1 boinc boinc   1006522 Mar 12 16:29 agis_schedconf.cvmfs.json
[2026-03-12 17:23:05] -rw------- 1 boinc boinc   1511578 Mar 12 16:29 agis_ddmendpoints.agis.ALL.json
[2026-03-12 17:23:05] -rw------- 1 boinc boinc       430 Mar 12 16:29 workernode_map.json
[2026-03-12 17:23:05] drwx------ 5 boinc boinc      4096 Mar 12 16:29 pilot3
[2026-03-12 17:23:05] -rw------- 1 boinc boinc 179998792 Mar 12 17:21 HITS.48936143._000156.pool.root.1
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc       529 Mar 12 17:21 boinc_task_state.xml
[2026-03-12 17:23:05] -rw------- 1 boinc boinc      1030 Mar 12 17:22 memory_monitor_summary.json
[2026-03-12 17:23:05] -rw------- 1 boinc boinc    356286 Mar 12 17:22 log.48936143._000156.job.log.tgz.1
[2026-03-12 17:23:05] -rw------- 1 boinc boinc      6327 Mar 12 17:22 heartbeat.json
[2026-03-12 17:23:05] -rw------- 1 boinc boinc        95 Mar 12 17:22 pilot_heartbeat.json
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc      8192 Mar 12 17:23 boinc_mmap_file
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc        27 Mar 12 17:23 wrapper_checkpoint.txt
[2026-03-12 17:23:05] -rw------- 1 boinc boinc      4826 Mar 12 17:23 pilotlog.txt
[2026-03-12 17:23:05] -rw------- 1 boinc boinc    484101 Mar 12 17:23 log.48936143._000156.job.log.1
[2026-03-12 17:23:05] -rw------- 1 boinc boinc       357 Mar 12 17:23 output.list
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc       620 Mar 12 17:23 runtime_log
[2026-03-12 17:23:05] -rw------- 1 boinc boinc    860160 Mar 12 17:23 result.tar.gz
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc      9403 Mar 12 17:23 runtime_log.err
[2026-03-12 17:23:05] -rw------- 1 boinc boinc       650 Mar 12 17:23 GEkMDmdPtH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmhPJLDmDzvI2n.diag
[2026-03-12 17:23:05] -rw-r--r-- 1 boinc boinc     20960 Mar 12 17:23 stderr.txt
[2026-03-12 17:23:05] HITS file was successfully produced:
[2026-03-12 17:23:05] -rw------- 1 boinc boinc 179998792 Mar 12 17:21 shared/HITS.pool.root.1
[2026-03-12 17:23:05]  *** Contents of shared directory: ***
[2026-03-12 17:23:05] total 427584
[2026-03-12 17:23:05] -rw-r--r-- 2 boinc boinc 256359316 Mar 12 16:29 ATLAS.root_0
[2026-03-12 17:23:05] -rw-r--r-- 2 boinc boinc     15845 Mar 12 16:29 start_atlas.sh
[2026-03-12 17:23:05] -rw-r--r-- 2 boinc boinc    597945 Mar 12 16:29 input.tar.gz
[2026-03-12 17:23:05] -rw------- 1 boinc boinc 179998792 Mar 12 17:21 HITS.pool.root.1
[2026-03-12 17:23:05] -rw------- 1 boinc boinc    860160 Mar 12 17:23 result.tar.gz
17:23:06 (233444): run_atlas exited; CPU time 32132.680604
17:23:06 (233444): called boinc_finish(0)

</stderr_txt>
]]>

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