Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:33:57 (25283): wrapper (7.7.26015): starting
05:33:57 (25283): wrapper: running run_atlas (--nthreads 12)
[2026-03-12 05:33:57] Arguments: --nthreads 12
[2026-03-12 05:33:57] Threads: 12
[2026-03-12 05:33:57] Checking for CVMFS
[2026-03-12 05:33:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 05:33:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 05:33:57] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 05:33:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 05:33:57] 2.11.2.0 2925 440148 102108 157195 3 49 13935037 20275201 1 130560 1 190684552 99.953 25366143 17290 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-12 05:33:57] CVMFS is ok
[2026-03-12 05:33:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 05:33:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 05:33:58] Further information can be found at the LHC@home message board.
[2026-03-12 05:33:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 05:33:58] Checking for apptainer binary...
[2026-03-12 05:33:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 05:33:58] Running /usr/bin/apptainer --version
[2026-03-12 05:33:58] apptainer version 1.3.2-1.el7
[2026-03-12 05:33:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 05:33:59] c-205-9.aglt2.org
[2026-03-12 05:33:59] apptainer works
[2026-03-12 05:33:59] Set ATHENA_PROC_NUMBER=12
[2026-03-12 05:33:59] Set ATHENA_CORE_NUMBER=12
[2026-03-12 05:33:59] Starting ATLAS job with PandaID=7037169076
[2026-03-12 05:33:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 06:37:32]  *** The last 200 lines of the pilot log: ***
[2026-03-12 06:37:32]  mtime=0
[2026-03-12 06:37:32]  protocol_id=None
[2026-03-12 06:37:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 06:37:32]  replicas=None
[2026-03-12 06:37:32]  scope=mc23_13p6TeV
[2026-03-12 06:37:32]  status=None
[2026-03-12 06:37:32]  status_code=0
[2026-03-12 06:37:32]  storage_token=
[2026-03-12 06:37:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7037169076/log.48936124._000155.job.log.tgz.1
[2026-03-12 06:37:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/94/log.48936124._000155.job.log.tgz.1
[2026-03-12 06:37:32]  workdir=None
[2026-03-12 06:37:32] ]
[2026-03-12 06:37:32] 2026-03-12 10:36:45,335 | INFO     | transferring file log.48936124._000155.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7037169076/log.48936124._000155.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-12 06:37:32] 2026-03-12 10:36:45,335 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7037169076/log.48936124._000155.job.log.tgz.1 /tmp/boinchome/slots/0/log.48936124._000155.job
[2026-03-12 06:37:32] 2026-03-12 10:36:45,359 | INFO     | adding to output.list: log.48936124._000155.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/94/log.48936124._000155.job.log.tg
[2026-03-12 06:37:32] 2026-03-12 10:36:45,360 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 06:37:32] 2026-03-12 10:36:45,360 | INFO     | summary of transferred files:
[2026-03-12 06:37:32] 2026-03-12 10:36:45,360 | INFO     |  -- lfn=log.48936124._000155.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 06:37:32] 2026-03-12 10:36:45,360 | INFO     | stage-out finished correctly
[2026-03-12 06:37:32] 2026-03-12 10:36:45,842 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 06:37:32] 2026-03-12 10:36:45,974 | INFO     | time since job start (3745s) is within the limit (349056.0s)
[2026-03-12 06:37:32] 2026-03-12 10:36:46,015 | WARNING  | process 1227 can no longer be monitored (due to stat problems) - aborting
[2026-03-12 06:37:32] 2026-03-12 10:36:46,015 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7037169076/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 06:37:32] 2026-03-12 10:36:46,104 | INFO     | number of running child processes to parent process 1227: 1
[2026-03-12 06:37:32] 2026-03-12 10:36:46,104 | INFO     | maximum number of monitored processes: 6
[2026-03-12 06:37:32] 2026-03-12 10:36:47,093 | INFO     | PID=29301 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 06:37:32] 2026-03-12 10:36:48,093 | INFO     | time since job start (3748s) is within the limit (349056.0s)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,607 | INFO     | monitor loop #286: job 0:7037169076 is in state 'finished'
[2026-03-12 06:37:32] 2026-03-12 10:36:48,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,810 | INFO     | job 7037169076 has state=finished
[2026-03-12 06:37:32] 2026-03-12 10:36:48,810 | INFO     | preparing for final server update for job 7037169076 in state='finished'
[2026-03-12 06:37:32] 2026-03-12 10:36:48,810 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7037169076/jobReport.json
[2026-03-12 06:37:32] 2026-03-12 10:36:48,814 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-12 06:37:32] 2026-03-12 10:36:48,814 | INFO     | this job has now completed (state=finished)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,814 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,815 | INFO     | log transfer has been attempted: DONE
[2026-03-12 06:37:32] 2026-03-12 10:36:48,815 | INFO     | job 7037169076 has finished - writing final server update
[2026-03-12 06:37:32] 2026-03-12 10:36:48,815 | INFO     | total number of processed events: 400 (read)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,818 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7037169076/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,818 | INFO     | extracted standard info from prmon json
[2026-03-12 06:37:32] 2026-03-12 10:36:48,819 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 06:37:32] 2026-03-12 10:36:48,819 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 06:37:32] 2026-03-12 10:36:48,819 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 06:37:32] 2026-03-12 10:36:48,819 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 06:37:32] 2026-03-12 10:36:48,820 | INFO     | fitting pss+swap vs Time
[2026-03-12 06:37:32] 2026-03-12 10:36:48,820 | INFO     | sum of square deviations: 48810217.5
[2026-03-12 06:37:32] 2026-03-12 10:36:48,821 | INFO     | sum of deviations: -2668839426.0
[2026-03-12 06:37:32] 2026-03-12 10:36:48,821 | INFO     | mean x: 1773310006.5
[2026-03-12 06:37:32] 2026-03-12 10:36:48,821 | INFO     | mean y: 2915760.111111111
[2026-03-12 06:37:32] 2026-03-12 10:36:48,821 | INFO     | intersect: 96963755155.41838
[2026-03-12 06:37:32] 2026-03-12 10:36:48,821 | INFO     | chi2: 0.09192463879563291
[2026-03-12 06:37:32] 2026-03-12 10:36:48,821 | INFO     | current memory leak: -54.68 B/s (using 54 data points, chi2=0.09)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,822 | INFO     | could have reported an average CPU frequency of 1695 MHz (6 samples)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,822 | INFO     | ..............................
[2026-03-12 06:37:32] 2026-03-12 10:36:48,822 | INFO     | . Timing measurements:
[2026-03-12 06:37:32] 2026-03-12 10:36:48,822 | INFO     | . get job = 0 s
[2026-03-12 06:37:32] 2026-03-12 10:36:48,822 | INFO     | . initial setup = 7 s
[2026-03-12 06:37:32] 2026-03-12 10:36:48,822 | INFO     | . payload setup = 7 s
[2026-03-12 06:37:32] 2026-03-12 10:36:48,822 | INFO     | . stage-in = 0 s
[2026-03-12 06:37:32] 2026-03-12 10:36:48,823 | INFO     | . payload execution = 3721 s
[2026-03-12 06:37:32] 2026-03-12 10:36:48,823 | INFO     | . stage-out = 0 s
[2026-03-12 06:37:32] 2026-03-12 10:36:48,823 | INFO     | . log creation = 0 s
[2026-03-12 06:37:32] 2026-03-12 10:36:48,823 | INFO     | ..............................
[2026-03-12 06:37:32] 2026-03-12 10:36:48,901 | INFO     | 
[2026-03-12 06:37:32] 2026-03-12 10:36:48,901 | INFO     | job summary report
[2026-03-12 06:37:32] 2026-03-12 10:36:48,902 | INFO     | --------------------------------------------------
[2026-03-12 06:37:32] 2026-03-12 10:36:48,902 | INFO     | PanDA job id: 7037169076
[2026-03-12 06:37:32] 2026-03-12 10:36:48,902 | INFO     | task id: 48936124
[2026-03-12 06:37:32] 2026-03-12 10:36:48,902 | INFO     | errors: (none)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,902 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 06:37:32] 2026-03-12 10:36:48,902 | INFO     | pilot state: finished 
[2026-03-12 06:37:32] 2026-03-12 10:36:48,903 | INFO     | transexitcode: 0
[2026-03-12 06:37:32] 2026-03-12 10:36:48,903 | INFO     | exeerrorcode: 0
[2026-03-12 06:37:32] 2026-03-12 10:36:48,903 | INFO     | exeerrordiag: 
[2026-03-12 06:37:32] 2026-03-12 10:36:48,903 | INFO     | exitcode: 0
[2026-03-12 06:37:32] 2026-03-12 10:36:48,903 | INFO     | exitmsg: OK
[2026-03-12 06:37:32] 2026-03-12 10:36:48,903 | INFO     | cpuconsumptiontime: 39715 s
[2026-03-12 06:37:32] 2026-03-12 10:36:48,904 | INFO     | nevents: 400
[2026-03-12 06:37:32] 2026-03-12 10:36:48,904 | INFO     | neventsw: 0
[2026-03-12 06:37:32] 2026-03-12 10:36:48,904 | INFO     | pid: 1227
[2026-03-12 06:37:32] 2026-03-12 10:36:48,904 | INFO     | pgrp: 1227
[2026-03-12 06:37:32] 2026-03-12 10:36:48,904 | INFO     | corecount: 12
[2026-03-12 06:37:32] 2026-03-12 10:36:48,904 | INFO     | event service: False
[2026-03-12 06:37:32] 2026-03-12 10:36:48,904 | INFO     | sizes: {0: 2279992, 1: 2280226, 11: 2280226, 3733: 2305946, 3734: 2315000, 3737: 2315138}
[2026-03-12 06:37:32] 2026-03-12 10:36:48,905 | INFO     | --------------------------------------------------
[2026-03-12 06:37:32] 2026-03-12 10:36:48,905 | INFO     | 
[2026-03-12 06:37:32] 2026-03-12 10:36:48,905 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-12 06:37:32] 2026-03-12 10:36:48,928 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,929 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,929 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,929 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,929 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,929 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,929 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,930 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,930 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,930 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,930 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,930 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,930 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,930 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,931 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,931 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,931 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,931 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,931 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,931 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 06:37:32] 2026-03-12 10:36:48,932 | INFO     | job 7037169076 has completed (purged errors)
[2026-03-12 06:37:32] 2026-03-12 10:36:48,932 | INFO     | overall cleanup function is called
[2026-03-12 06:37:32] 2026-03-12 10:36:49,940 | INFO     | --- collectZombieJob: --- 10, [1227]
[2026-03-12 06:37:32] 2026-03-12 10:36:49,940 | INFO     | zombie collector waiting for pid 1227
[2026-03-12 06:37:32] 2026-03-12 10:36:49,940 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 06:37:32] 2026-03-12 10:36:49,940 | INFO     | collected zombie processes
[2026-03-12 06:37:32] 2026-03-12 10:36:49,941 | INFO     | will attempt to kill all subprocesses of pid=1227
[2026-03-12 06:37:32] 2026-03-12 10:36:50,033 | INFO     | process IDs to be killed: [1227] (in reverse order)
[2026-03-12 06:37:32] 2026-03-12 10:36:50,083 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 06:37:32] 2026-03-12 10:36:50,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 06:37:32] 2026-03-12 10:36:50,087 | INFO     | did not find any defunct processes belonging to 1227
[2026-03-12 06:37:32] 2026-03-12 10:36:50,090 | INFO     | did not find any defunct processes belonging to 1227
[2026-03-12 06:37:32] 2026-03-12 10:36:50,090 | INFO     | ready for new job
[2026-03-12 06:37:32] 2026-03-12 10:36:50,090 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 06:37:32] 2026-03-12 10:36:50,091 | INFO     | **************************************
[2026-03-12 06:37:32] 2026-03-12 10:36:50,092 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 06:37:32] 2026-03-12 10:36:50,092 | INFO     | **************************************
[2026-03-12 06:37:32] 2026-03-12 10:36:50,092 | INFO     | 
[2026-03-12 06:37:32] 2026-03-12 10:36:50,092 | INFO     | architecture information:
[2026-03-12 06:37:32] 2026-03-12 10:36:50,093 | INFO     | executing command: cat /etc/os-release
[2026-03-12 06:37:32] 2026-03-12 10:36:50,110 | INFO     | cat /etc/os-release:
[2026-03-12 06:37:32] NAME="CentOS Linux"
[2026-03-12 06:37:32] VERSION="7 (Core)"
[2026-03-12 06:37:32] ID="centos"
[2026-03-12 06:37:32] ID_LIKE="rhel fedora"
[2026-03-12 06:37:32] VERSION_ID="7"
[2026-03-12 06:37:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 06:37:32] ANSI_COLOR="0;31"
[2026-03-12 06:37:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 06:37:32] HOME_URL="https://www.centos.org/"
[2026-03-12 06:37:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 06:37:32] 
[2026-03-12 06:37:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 06:37:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 06:37:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 06:37:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 06:37:32] 
[2026-03-12 06:37:32] 2026-03-12 10:36:50,110 | INFO     | **************************************
[2026-03-12 06:37:32] 2026-03-12 10:36:50,613 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-12 06:37:32] 2026-03-12 10:36:50,629 | INFO     | sufficient remaining disk space (29268901888 B)
[2026-03-12 06:37:32] 2026-03-12 10:36:50,629 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 06:37:32] 2026-03-12 10:36:50,629 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 06:37:32] 2026-03-12 10:36:50,630 | INFO     | update_server=False
[2026-03-12 06:37:32] 2026-03-12 10:36:50,630 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 06:37:32] 2026-03-12 10:36:50,630 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 06:37:32] 2026-03-12 10:36:50,951 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 06:37:32] 2026-03-12 10:36:51,109 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-12 06:37:32] 2026-03-12 10:36:51,109 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-12 06:37:32] 2026-03-12 10:36:51,109 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 06:37:32] 2026-03-12 10:36:51,109 | INFO     | will abort loop
[2026-03-12 06:37:32] 2026-03-12 10:36:51,111 | INFO     | all job control threads have been joined
[2026-03-12 06:37:32] 2026-03-12 10:36:51,325 | INFO     | all payload control threads have been joined
[2026-03-12 06:37:32] 2026-03-12 10:36:51,529 | INFO     | all data control threads have been joined
[2026-03-12 06:37:32] 2026-03-12 10:36:51,635 | INFO     | [job] retrieve thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:51,636 | INFO     | [job] queue monitor thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:51,737 | INFO     | [data] copytool_in thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:51,741 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:51,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 06:37:32] 2026-03-12 10:36:52,019 | INFO     | [payload] validate_post thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:52,114 | INFO     | [job] job monitor thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:52,115 | INFO     | [job] control thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:52,330 | INFO     | [payload] control thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:52,535 | INFO     | [data] control thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:52,539 | INFO     | [job] validate thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:52,599 | INFO     | [payload] failed_post thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:52,880 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:52,957 | INFO     | [data] copytool_out thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:53,043 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:36:55,933 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:37:01,410 | INFO     | job.realtimelogging is not enabled
[2026-03-12 06:37:32] 2026-03-12 10:37:02,413 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 06:37:32] 2026-03-12 10:37:21,274 | INFO     | PID=29301 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-12 06:37:32] 2026-03-12 10:37:21,275 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 06:37:32] 2026-03-12 10:37:21,275 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 06:37:32] 2026-03-12 10:37:21,275 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 06:37:32] 2026-03-12 10:37:26,146 | INFO     | [monitor] cgroup control has ended
[2026-03-12 06:37:32] 2026-03-12 10:37:26,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042289997632)>', '<ExcThread(monitor, started 140041032562432)>']
[2026-03-12 06:37:32] 2026-03-12 10:37:27,304 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 06:37:32] 2026-03-12 10:37:27,304 | INFO     | [monitor] control thread has ended
[2026-03-12 06:37:32] 2026-03-12 10:37:31,865 | INFO     | all workflow threads have been joined
[2026-03-12 06:37:32] 2026-03-12 10:37:31,865 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 06:37:32] 2026-03-12 10:37:31,874 | INFO     | traces error code: 0
[2026-03-12 06:37:32] 2026-03-12 10:37:31,874 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 06:37:32] 2026-03-12 10:37:31,966 [wrapper] ==== pilot stdout END ====
[2026-03-12 06:37:32] 2026-03-12 10:37:31,970 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 06:37:32] 2026-03-12 10:37:31,973 [wrapper] pilotpid: 29301
[2026-03-12 06:37:32] 2026-03-12 10:37:31,977 [wrapper] Pilot exit status: 0
[2026-03-12 06:37:32] 2026-03-12 10:37:31,992 [wrapper] pandaids: 7037169076
[2026-03-12 06:37:32] 2026-03-12 10:37:32,035 [wrapper] cleanup supervisor_pilot 19736 29302
[2026-03-12 06:37:32] 2026-03-12 10:37:32,039 [wrapper] Test setup, not cleaning
[2026-03-12 06:37:32] 2026-03-12 10:37:32,043 [wrapper] apfmon messages muted
[2026-03-12 06:37:32] 2026-03-12 10:37:32,047 [wrapper] ==== wrapper stdout END ====
[2026-03-12 06:37:32] 2026-03-12 10:37:32,051 [wrapper] ==== wrapper stderr END ====
[2026-03-12 06:37:32]  *** Error codes and diagnostics ***
[2026-03-12 06:37:32]     "exeErrorCode": 0,
[2026-03-12 06:37:32]     "exeErrorDiag": "",
[2026-03-12 06:37:32]     "pilotErrorCode": 0,
[2026-03-12 06:37:32]     "pilotErrorDiag": "",
[2026-03-12 06:37:32]  *** Listing of results directory ***
[2026-03-12 06:37:32] total 434612
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas      5111 Mar  3 23:50 queuedata.json
[2026-03-12 06:37:32] -rwx------ 1 boincer umatlas     36322 Mar  3 23:50 runpilot2-wrapper.sh
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas    584627 Mar  3 23:50 pilot3.tar.gz
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas       100 Mar 12 05:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 06:37:32] -rwxr-xr-x 1 boincer umatlas      7986 Mar 12 05:33 run_atlas
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas       105 Mar 12 05:33 job.xml
[2026-03-12 06:37:32] -rw-r--r-- 2 boincer umatlas 260746249 Mar 12 05:33 EVNT.48564674._000007.pool.root.1
[2026-03-12 06:37:32] -rw-r--r-- 2 boincer umatlas     15845 Mar 12 05:33 start_atlas.sh
[2026-03-12 06:37:32] drwxrwx--x 2 boincer umatlas      4096 Mar 12 05:33 shared
[2026-03-12 06:37:32] -rw-r--r-- 2 boincer umatlas    597941 Mar 12 05:33 input.tar.gz
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas         0 Mar 12 05:33 boinc_lockfile
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas      2537 Mar 12 05:33 pandaJob.out
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas        57 Mar 12 05:34 setup.sh.local
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas   1006243 Mar 12 05:34 agis_schedconf.cvmfs.json
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas   1511578 Mar 12 05:34 agis_ddmendpoints.agis.ALL.json
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas       444 Mar 12 05:34 workernode_map.json
[2026-03-12 06:37:32] drwx------ 5 boincer umatlas      4096 Mar 12 05:34 pilot3
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas      5952 Mar 12 06:28 init_data.xml
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas 178520491 Mar 12 06:36 HITS.48936124._000155.pool.root.1
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas      1045 Mar 12 06:36 memory_monitor_summary.json
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas    362794 Mar 12 06:36 log.48936124._000155.job.log.tgz.1
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas       529 Mar 12 06:36 boinc_task_state.xml
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas      6406 Mar 12 06:36 heartbeat.json
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas        27 Mar 12 06:37 wrapper_checkpoint.txt
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas      8192 Mar 12 06:37 boinc_mmap_file
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas        95 Mar 12 06:37 pilot_heartbeat.json
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas      5000 Mar 12 06:37 pilotlog.txt
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas    555112 Mar 12 06:37 log.48936124._000155.job.log.1
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas       357 Mar 12 06:37 output.list
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas       620 Mar 12 06:37 runtime_log
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas    931840 Mar 12 06:37 result.tar.gz
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas       658 Mar 12 06:37 ZfDNDmgMtH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmILJLDmpA31Uo.diag
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas      9338 Mar 12 06:37 runtime_log.err
[2026-03-12 06:37:32] -rw-r--r-- 1 boincer umatlas     21781 Mar 12 06:37 stderr.txt
[2026-03-12 06:37:32] HITS file was successfully produced:
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas 178520491 Mar 12 06:36 shared/HITS.pool.root.1
[2026-03-12 06:37:32]  *** Contents of shared directory: ***
[2026-03-12 06:37:32] total 430496
[2026-03-12 06:37:32] -rw-r--r-- 2 boincer umatlas 260746249 Mar 12 05:33 ATLAS.root_0
[2026-03-12 06:37:32] -rw-r--r-- 2 boincer umatlas     15845 Mar 12 05:33 start_atlas.sh
[2026-03-12 06:37:32] -rw-r--r-- 2 boincer umatlas    597941 Mar 12 05:33 input.tar.gz
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas 178520491 Mar 12 06:36 HITS.pool.root.1
[2026-03-12 06:37:32] -rw------- 1 boincer umatlas    931840 Mar 12 06:37 result.tar.gz
06:37:33 (25283): run_atlas exited; CPU time 39692.018408
06:37:33 (25283): called boinc_finish(0)

</stderr_txt>
]]>

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