Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:25:15 (3653685): wrapper (7.7.26015): starting
08:25:15 (3653685): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 08:25:15] Arguments: --nthreads 4
[2026-03-14 08:25:15] Threads: 4
[2026-03-14 08:25:15] Checking for CVMFS
[2026-03-14 08:25:15] No cvmfs_config command found, will try listing directly
[2026-03-14 08:25:15] CVMFS is ok
[2026-03-14 08:25:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 08:25:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 08:25:15] Further information can be found at the LHC@home message board.
[2026-03-14 08:25:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 08:25:15] Checking for apptainer binary...
[2026-03-14 08:25:15] which: no apptainer in ((null))
[2026-03-14 08:25:15] apptainer is not installed, using version from CVMFS
[2026-03-14 08:25:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 08:25:15] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot208/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut27.grid.cesnet.cz
[2026-03-14 08:25:15] apptainer works
[2026-03-14 08:25:15] Set ATHENA_PROC_NUMBER=4
[2026-03-14 08:25:15] Set ATHENA_CORE_NUMBER=4
[2026-03-14 08:25:15] Starting ATLAS job with PandaID=7051044579
[2026-03-14 08:25:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot208/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 10:18:47]  *** The last 200 lines of the pilot log: ***
[2026-03-14 10:18:47] 2026-03-14 09:17:47,485 | INFO     | time since job start (6736s) is within the limit (345600.0s)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,170 | INFO     | job 7051044579 has state=finished
[2026-03-14 10:18:47] 2026-03-14 09:17:48,170 | INFO     | preparing for final server update for job 7051044579 in state='finished'
[2026-03-14 10:18:47] 2026-03-14 09:17:48,171 | INFO     | reading metadata from: /var/lib/boinc/var/slot208/slots/0/PanDA_Pilot-7051044579/jobReport.json
[2026-03-14 10:18:47] 2026-03-14 09:17:48,172 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot208/slots/0/workernode_map.json
[2026-03-14 10:18:47] 2026-03-14 09:17:48,172 | INFO     | this job has now completed (state=finished)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,172 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,172 | INFO     | log transfer has been attempted: DONE
[2026-03-14 10:18:47] 2026-03-14 09:17:48,172 | INFO     | job 7051044579 has finished - writing final server update
[2026-03-14 10:18:47] 2026-03-14 09:17:48,172 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1660686/.job.ad'
[2026-03-14 10:18:47] 2026-03-14 09:17:48,173 | INFO     | total number of processed events: 400 (read)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,190 | INFO     | using path: /var/lib/boinc/var/slot208/slots/0/PanDA_Pilot-7051044579/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,191 | INFO     | extracted standard info from prmon json
[2026-03-14 10:18:47] 2026-03-14 09:17:48,191 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 10:18:47] 2026-03-14 09:17:48,191 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 10:18:47] 2026-03-14 09:17:48,191 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 10:18:47] 2026-03-14 09:17:48,191 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 10:18:47] 2026-03-14 09:17:48,192 | INFO     | fitting pss+swap vs Time
[2026-03-14 10:18:47] 2026-03-14 09:17:48,192 | INFO     | sum of square deviations: 412686807.5
[2026-03-14 10:18:47] 2026-03-14 09:17:48,193 | INFO     | sum of deviations: 7574191971.5
[2026-03-14 10:18:47] 2026-03-14 09:17:48,193 | INFO     | mean x: 1773476477.5
[2026-03-14 10:18:47] 2026-03-14 09:17:48,193 | INFO     | mean y: 2330535.809090909
[2026-03-14 10:18:47] 2026-03-14 09:17:48,193 | INFO     | intersect: -32546932133.61753
[2026-03-14 10:18:47] 2026-03-14 09:17:48,193 | INFO     | chi2: 1.1026458050277324
[2026-03-14 10:18:47] 2026-03-14 09:17:48,193 | INFO     | sum of square deviations: 358927660.0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,193 | INFO     | sum of deviations: 7215456552.999999
[2026-03-14 10:18:47] 2026-03-14 09:17:48,193 | INFO     | mean x: 1773476325.0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,193 | INFO     | mean y: 2329520.3523809523
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | intersect: -35649537964.06386
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | chi2: 1.1044829413665904
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | current chi2=1.1044829413665904 (change=-0.16661164722899066 %)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | right removable region: 104
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | sum of square deviations: 358927660.0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | sum of deviations: -2367039425.000001
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | mean x: 1773476630.0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | mean y: 2357828.9142857143
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | intersect: 11697998957.620108
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | chi2: 0.0015978693636380834
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | current chi2=0.0015978693636380834 (change=99.8550877030183 %)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,194 | INFO     | sum of square deviations: 310052325.0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,195 | INFO     | sum of deviations: -1899508432.5
[2026-03-14 10:18:47] 2026-03-14 09:17:48,195 | INFO     | mean x: 1773476782.5
[2026-03-14 10:18:47] 2026-03-14 09:17:48,195 | INFO     | mean y: 2356388.33
[2026-03-14 10:18:47] 2026-03-14 09:17:48,195 | INFO     | intersect: 10867406676.863455
[2026-03-14 10:18:47] 2026-03-14 09:17:48,195 | INFO     | chi2: 0.0012285221605035108
[2026-03-14 10:18:47] 2026-03-14 09:17:48,195 | INFO     | current chi2=0.0012285221605035108 (change=23.114981208077634 %)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,195 | INFO     | left removable region: 20
[2026-03-14 10:18:47] 2026-03-14 09:17:48,195 | INFO     | sum of square deviations: 183761585.0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,195 | INFO     | sum of deviations: -1019157256.0000001
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | mean x: 1773476904.5
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | mean y: 2353435.619047619
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | intersect: 9838205991.906012
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | chi2: 0.0006391527893133938
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | current memory leak: -5.55 B/s (using 84 data points, chi2=0.00)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | could have reported an average CPU frequency of 3564 MHz (7 samples)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | ..............................
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | . Timing measurements:
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | . get job = 0 s
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | . initial setup = 5 s
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | . payload setup = 6 s
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | . stage-in = 0 s
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | . payload execution = 6712 s
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | . stage-out = 0 s
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | . log creation = 0 s
[2026-03-14 10:18:47] 2026-03-14 09:17:48,199 | INFO     | ..............................
[2026-03-14 10:18:47] 2026-03-14 09:17:48,590 | INFO     | 
[2026-03-14 10:18:47] 2026-03-14 09:17:48,590 | INFO     | job summary report
[2026-03-14 10:18:47] 2026-03-14 09:17:48,590 | INFO     | --------------------------------------------------
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | PanDA job id: 7051044579
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | task id: 48998022
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | errors: (none)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | pilot state: finished 
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | transexitcode: 0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | exeerrorcode: 0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | exeerrordiag: 
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | exitcode: 0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | exitmsg: OK
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | cpuconsumptiontime: 25820 s
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | nevents: 400
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | neventsw: 0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | pid: 3664125
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | pgrp: 3664125
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | corecount: 4
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | event service: False
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | sizes: {0: 2280299, 11: 2280299, 6722: 2307491, 6724: 2316569, 6726: 2316707}
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | --------------------------------------------------
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | 
[2026-03-14 10:18:47] 2026-03-14 09:17:48,591 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot208/slots/0
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,613 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,614 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,614 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,614 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,614 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,614 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,614 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,614 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 10:18:47] 2026-03-14 09:17:48,614 | INFO     | job 7051044579 has completed (purged errors)
[2026-03-14 10:18:47] 2026-03-14 09:17:48,614 | INFO     | overall cleanup function is called
[2026-03-14 10:18:47] 2026-03-14 09:17:49,620 | INFO     | --- collectZombieJob: --- 10, [3664125]
[2026-03-14 10:18:47] 2026-03-14 09:17:49,620 | INFO     | zombie collector waiting for pid 3664125
[2026-03-14 10:18:47] 2026-03-14 09:17:49,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 10:18:47] 2026-03-14 09:17:49,620 | INFO     | collected zombie processes
[2026-03-14 10:18:47] 2026-03-14 09:17:49,620 | INFO     | will attempt to kill all subprocesses of pid=3664125
[2026-03-14 10:18:47] 2026-03-14 09:17:50,108 | INFO     | process IDs to be killed: [3664125] (in reverse order)
[2026-03-14 10:18:47] 2026-03-14 09:17:50,340 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 10:18:47] 2026-03-14 09:17:50,341 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 10:18:47] 2026-03-14 09:17:50,371 | INFO     | did not find any defunct processes belonging to 3664125
[2026-03-14 10:18:47] 2026-03-14 09:17:50,401 | INFO     | did not find any defunct processes belonging to 3664125
[2026-03-14 10:18:47] 2026-03-14 09:17:50,401 | INFO     | ready for new job
[2026-03-14 10:18:47] 2026-03-14 09:17:50,401 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 10:18:47] 2026-03-14 09:17:50,402 | INFO     | **************************************
[2026-03-14 10:18:47] 2026-03-14 09:17:50,403 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 10:18:47] 2026-03-14 09:17:50,403 | INFO     | **************************************
[2026-03-14 10:18:47] 2026-03-14 09:17:50,403 | INFO     | 
[2026-03-14 10:18:47] 2026-03-14 09:17:50,409 | INFO     | architecture information:
[2026-03-14 10:18:47] 2026-03-14 09:17:50,409 | INFO     | executing command: cat /etc/os-release
[2026-03-14 10:18:47] 2026-03-14 09:17:50,425 | INFO     | cat /etc/os-release:
[2026-03-14 10:18:47] NAME="CentOS Linux"
[2026-03-14 10:18:47] VERSION="7 (Core)"
[2026-03-14 10:18:47] ID="centos"
[2026-03-14 10:18:47] ID_LIKE="rhel fedora"
[2026-03-14 10:18:47] VERSION_ID="7"
[2026-03-14 10:18:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 10:18:47] ANSI_COLOR="0;31"
[2026-03-14 10:18:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 10:18:47] HOME_URL="https://www.centos.org/"
[2026-03-14 10:18:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 10:18:47] 
[2026-03-14 10:18:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 10:18:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 10:18:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 10:18:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 10:18:47] 
[2026-03-14 10:18:47] 2026-03-14 09:17:50,425 | INFO     | **************************************
[2026-03-14 10:18:47] 2026-03-14 09:17:50,928 | INFO     | executing command: df -mP /var/lib/boinc/var/slot208/slots/0
[2026-03-14 10:18:47] 2026-03-14 09:17:50,945 | INFO     | sufficient remaining disk space (20494417920 B)
[2026-03-14 10:18:47] 2026-03-14 09:17:50,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 10:18:47] 2026-03-14 09:17:50,945 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 10:18:47] 2026-03-14 09:17:50,945 | INFO     | update_server=False
[2026-03-14 10:18:47] 2026-03-14 09:17:50,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 10:18:47] 2026-03-14 09:17:51,669 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 10:18:47] 2026-03-14 09:17:51,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 10:18:47] 2026-03-14 09:17:51,755 | INFO     | aborting loop
[2026-03-14 10:18:47] 2026-03-14 09:17:51,869 | INFO     | all data control threads have been joined
[2026-03-14 10:18:47] 2026-03-14 09:17:51,950 | INFO     | [job] retrieve thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:52,013 | INFO     | all payload control threads have been joined
[2026-03-14 10:18:47] 2026-03-14 09:17:52,040 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:52,216 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 10:18:47] 2026-03-14 09:17:52,520 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:52,584 | INFO     | all job control threads have been joined
[2026-03-14 10:18:47] 2026-03-14 09:17:52,741 | INFO     | [job] validate thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:52,761 | INFO     | [job] job monitor thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:52,830 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:52,874 | INFO     | [data] control thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:52,907 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:52,948 | INFO     | [payload] failed_post thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:52,956 | INFO     | [data] copytool_in thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:53,018 | INFO     | [payload] control thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:53,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 10:18:47] 2026-03-14 09:17:53,381 | INFO     | [payload] validate_post thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:53,589 | INFO     | [job] control thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:53,674 | INFO     | [data] copytool_out thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:54,262 | INFO     | [job] queue monitor thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:17:56,221 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 10:18:47] 2026-03-14 09:18:21,207 | INFO     | PID=3658257 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 10:18:47] 2026-03-14 09:18:21,207 | INFO     | .. there are 47 such processes running
[2026-03-14 10:18:47] 2026-03-14 09:18:21,207 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 10:18:47] 2026-03-14 09:18:21,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 10:18:47] 2026-03-14 09:18:21,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 10:18:47] 2026-03-14 09:18:41,952 | INFO     | [monitor] cgroup control has ended
[2026-03-14 10:18:47] 2026-03-14 09:18:42,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22966906607424)>', '<ExcThread(monitor, started 22966578403072)>']
[2026-03-14 10:18:47] 2026-03-14 09:18:42,311 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 10:18:47] 2026-03-14 09:18:42,311 | INFO     | [monitor] control thread has ended
[2026-03-14 10:18:47] 2026-03-14 09:18:47,227 | INFO     | all workflow threads have been joined
[2026-03-14 10:18:47] 2026-03-14 09:18:47,227 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 10:18:47] 2026-03-14 09:18:47,227 | INFO     | traces error code: 0
[2026-03-14 10:18:47] 2026-03-14 09:18:47,227 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 10:18:47] 2026-03-14 09:18:47,343 [wrapper] ==== pilot stdout END ====
[2026-03-14 10:18:47] 2026-03-14 09:18:47,345 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 10:18:47] 2026-03-14 09:18:47,347 [wrapper] pilotpid: 3658257
[2026-03-14 10:18:47] 2026-03-14 09:18:47,348 [wrapper] Pilot exit status: 0
[2026-03-14 10:18:47] 2026-03-14 09:18:47,355 [wrapper] pandaids: 7051044579
[2026-03-14 10:18:47] 2026-03-14 09:18:47,479 [wrapper] cleanup supervisor_pilot  201305 3658258
[2026-03-14 10:18:47] 2026-03-14 09:18:47,482 [wrapper] Test setup, not cleaning
[2026-03-14 10:18:47] 2026-03-14 09:18:47,485 [wrapper] apfmon messages muted
[2026-03-14 10:18:47] 2026-03-14 09:18:47,486 [wrapper] ==== wrapper stdout END ====
[2026-03-14 10:18:47] 2026-03-14 09:18:47,488 [wrapper] ==== wrapper stderr END ====
[2026-03-14 10:18:47]  *** Error codes and diagnostics ***
[2026-03-14 10:18:47]     "exeErrorCode": 0,
[2026-03-14 10:18:47]     "exeErrorDiag": "",
[2026-03-14 10:18:47]     "pilotErrorCode": 0,
[2026-03-14 10:18:47]     "pilotErrorDiag": "",
[2026-03-14 10:18:47]  *** Listing of results directory ***
[2026-03-14 10:18:47] total 563220
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc    585013 Mar 12 04:25 pilot3.tar.gz
[2026-03-14 10:18:47] -rwx------. 1 boinc boinc     36322 Mar 12 04:25 runpilot2-wrapper.sh
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc      5111 Mar 12 04:26 queuedata.json
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc       100 Mar 14 08:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 10:18:47] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 08:25 run_atlas
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc       105 Mar 14 08:25 job.xml
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc      6709 Mar 14 08:25 init_data.xml
[2026-03-14 10:18:47] -rw-r--r--. 2 boinc boinc 323825593 Mar 14 08:25 EVNT.48998020._000110.pool.root.1
[2026-03-14 10:18:47] -rw-r--r--. 2 boinc boinc     15845 Mar 14 08:25 start_atlas.sh
[2026-03-14 10:18:47] drwxrwx--x. 2 boinc boinc      4096 Mar 14 08:25 shared
[2026-03-14 10:18:47] -rw-r--r--. 2 boinc boinc    597538 Mar 14 08:25 input.tar.gz
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc         0 Mar 14 08:25 boinc_lockfile
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc      2610 Mar 14 08:25 pandaJob.out
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc   1004579 Mar 14 08:25 agis_schedconf.cvmfs.json
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc   1511579 Mar 14 08:25 agis_ddmendpoints.agis.ALL.json
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc       445 Mar 14 08:25 workernode_map.json
[2026-03-14 10:18:47] drwx------. 5 boinc boinc      4096 Mar 14 08:25 pilot3
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc 246439070 Mar 14 10:17 HITS.48998022._002879.pool.root.1
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc       529 Mar 14 10:17 boinc_task_state.xml
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc        95 Mar 14 10:17 pilot_heartbeat.json
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc      1030 Mar 14 10:17 memory_monitor_summary.json
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc    302017 Mar 14 10:17 log.48998022._002879.job.log.tgz.1
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc      6354 Mar 14 10:17 heartbeat.json
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc      8192 Mar 14 10:18 boinc_mmap_file
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc        27 Mar 14 10:18 wrapper_checkpoint.txt
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc      4830 Mar 14 10:18 pilotlog.txt
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc    966218 Mar 14 10:18 log.48998022._002879.job.log.1
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc       357 Mar 14 10:18 output.list
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc       620 Mar 14 10:18 runtime_log
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc   1290240 Mar 14 10:18 result.tar.gz
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc      9221 Mar 14 10:18 runtime_log.err
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc       663 Mar 14 10:18 F7eMDmKrlK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmd4iLDm3jYIkm.diag
[2026-03-14 10:18:47] -rw-r--r--. 1 boinc boinc     21105 Mar 14 10:18 stderr.txt
[2026-03-14 10:18:47] HITS file was successfully produced:
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc 246439070 Mar 14 10:17 shared/HITS.pool.root.1
[2026-03-14 10:18:47]  *** Contents of shared directory: ***
[2026-03-14 10:18:47] total 558768
[2026-03-14 10:18:47] -rw-r--r--. 2 boinc boinc 323825593 Mar 14 08:25 ATLAS.root_0
[2026-03-14 10:18:47] -rw-r--r--. 2 boinc boinc     15845 Mar 14 08:25 start_atlas.sh
[2026-03-14 10:18:47] -rw-r--r--. 2 boinc boinc    597538 Mar 14 08:25 input.tar.gz
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc 246439070 Mar 14 10:17 HITS.pool.root.1
[2026-03-14 10:18:47] -rw-------. 1 boinc boinc   1290240 Mar 14 10:18 result.tar.gz
10:18:49 (3653685): run_atlas exited; CPU time 26138.038082
10:18:49 (3653685): called boinc_finish(0)

</stderr_txt>
]]>

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