Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
20:08:05 (414845): wrapper (7.7.26015): starting
20:08:05 (414845): wrapper: running run_atlas (--nthreads 12)
[2026-03-12 20:08:05] Arguments: --nthreads 12
[2026-03-12 20:08:05] Threads: 12
[2026-03-12 20:08:05] Checking for CVMFS
[2026-03-12 20:08:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 20:08:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 20:08:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 20:08:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 20:08:07] 2.12.7.0 4877 432 60544 157220 3 55 2118070 4194304 2751 130560 0 933699 99.997 13901 1986 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-03-12 20:08:07] CVMFS is ok
[2026-03-12 20:08:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 20:08:07] Checking for apptainer binary...
[2026-03-12 20:08:07] apptainer is not installed, using version from CVMFS
[2026-03-12 20:08:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 20:08:07] Trebeth
[2026-03-12 20:08:07] apptainer works
[2026-03-12 20:08:07] Set ATHENA_PROC_NUMBER=12
[2026-03-12 20:08:07] Set ATHENA_CORE_NUMBER=12
[2026-03-12 20:08:07] Starting ATLAS job with PandaID=7051436687
[2026-03-12 20:08:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 21:17:34]  *** The last 200 lines of the pilot log: ***
[2026-03-12 21:17:34]  is_altstaged=None
[2026-03-12 21:17:34]  is_tar=False
[2026-03-12 21:17:34]  lfn=log.48967085._014603.job.log.tgz.1
[2026-03-12 21:17:34]  mtime=0
[2026-03-12 21:17:34]  protocol_id=None
[2026-03-12 21:17:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 21:17:34]  replicas=None
[2026-03-12 21:17:34]  scope=mc23_13p6TeV
[2026-03-12 21:17:34]  status=None
[2026-03-12 21:17:34]  status_code=0
[2026-03-12 21:17:34]  storage_token=
[2026-03-12 21:17:34]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-7051436687/log.48967085._014603.job.log.tgz.1
[2026-03-12 21:17:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/1a/log.48967085._014603.job.log.tgz.1
[2026-03-12 21:17:34]  workdir=None
[2026-03-12 21:17:34] ]
[2026-03-12 21:17:34] 2026-03-13 01:16:50,585 | INFO     | transferring file log.48967085._014603.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-7051436687/log.48967085._014603.job.log.tgz.1 to /var/lib/boinc
[2026-03-12 21:17:34] 2026-03-13 01:16:50,586 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-7051436687/log.48967085._014603.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.489670
[2026-03-12 21:17:34] 2026-03-13 01:16:50,600 | INFO     | adding to output.list: log.48967085._014603.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/1a/log.48967085._014603.job.log.tg
[2026-03-12 21:17:34] 2026-03-13 01:16:50,601 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 21:17:34] 2026-03-13 01:16:50,601 | INFO     | summary of transferred files:
[2026-03-12 21:17:34] 2026-03-13 01:16:50,601 | INFO     |  -- lfn=log.48967085._014603.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 21:17:34] 2026-03-13 01:16:50,602 | INFO     | stage-out finished correctly
[2026-03-12 21:17:34] 2026-03-13 01:16:50,701 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 21:17:34] 2026-03-13 01:16:51,142 | INFO     | time since job start (4109s) is within the limit (345600.0s)
[2026-03-12 21:17:34] 2026-03-13 01:16:51,253 | INFO     | monitor loop #310: job 0:7051436687 is in state 'finished'
[2026-03-12 21:17:34] 2026-03-13 01:16:51,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 21:17:34] 2026-03-13 01:16:52,443 | INFO     | PID=419222 has CPU usage=10.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 21:17:34] 2026-03-13 01:16:52,443 | INFO     | .. there are 4 such processes running
[2026-03-12 21:17:34] 2026-03-13 01:16:53,444 | INFO     | time since job start (4111s) is within the limit (345600.0s)
[2026-03-12 21:17:34] 2026-03-13 01:16:53,726 | INFO     | job 7051436687 has state=finished
[2026-03-12 21:17:34] 2026-03-13 01:16:53,726 | INFO     | preparing for final server update for job 7051436687 in state='finished'
[2026-03-12 21:17:34] 2026-03-13 01:16:53,727 | INFO     | reading metadata from: /var/lib/boinc-client/slots/1/PanDA_Pilot-7051436687/jobReport.json
[2026-03-12 21:17:34] 2026-03-13 01:16:53,731 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/1/workernode_map.json
[2026-03-12 21:17:34] 2026-03-13 01:16:53,731 | INFO     | this job has now completed (state=finished)
[2026-03-12 21:17:34] 2026-03-13 01:16:53,731 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 21:17:34] 2026-03-13 01:16:53,732 | INFO     | log transfer has been attempted: DONE
[2026-03-12 21:17:34] 2026-03-13 01:16:53,732 | INFO     | job 7051436687 has finished - writing final server update
[2026-03-12 21:17:34] 2026-03-13 01:16:53,732 | INFO     | total number of processed events: 400 (read)
[2026-03-12 21:17:34] 2026-03-13 01:16:53,756 | INFO     | monitor loop #311: job 0:7051436687 is in state 'finished'
[2026-03-12 21:17:34] 2026-03-13 01:16:53,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 21:17:34] 2026-03-13 01:16:53,761 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-7051436687/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 21:17:34] 2026-03-13 01:16:53,762 | INFO     | extracted standard info from prmon json
[2026-03-12 21:17:34] 2026-03-13 01:16:53,762 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 21:17:34] 2026-03-13 01:16:53,762 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 21:17:34] 2026-03-13 01:16:53,762 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 21:17:34] 2026-03-13 01:16:53,763 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 21:17:34] 2026-03-13 01:16:53,764 | INFO     | fitting pss+swap vs Time
[2026-03-12 21:17:34] 2026-03-13 01:16:53,765 | INFO     | sum of square deviations: 66959395.0
[2026-03-12 21:17:34] 2026-03-13 01:16:53,765 | INFO     | sum of deviations: 2500665170.9999995
[2026-03-12 21:17:34] 2026-03-13 01:16:53,765 | INFO     | mean x: 1773362626.5
[2026-03-12 21:17:34] 2026-03-13 01:16:53,765 | INFO     | mean y: 2650081.1666666665
[2026-03-12 21:17:34] 2026-03-13 01:16:53,765 | INFO     | intersect: -66225340115.60304
[2026-03-12 21:17:34] 2026-03-13 01:16:53,765 | INFO     | chi2: 0.07821286260989763
[2026-03-12 21:17:34] 2026-03-13 01:16:53,766 | INFO     | current memory leak: 37.35 B/s (using 60 data points, chi2=0.08)
[2026-03-12 21:17:34] 2026-03-13 01:16:53,766 | INFO     | could have reported an average CPU frequency of 2522 MHz (6 samples)
[2026-03-12 21:17:34] 2026-03-13 01:16:53,766 | INFO     | ..............................
[2026-03-12 21:17:34] 2026-03-13 01:16:53,766 | INFO     | . Timing measurements:
[2026-03-12 21:17:34] 2026-03-13 01:16:53,766 | INFO     | . get job = 0 s
[2026-03-12 21:17:34] 2026-03-13 01:16:53,766 | INFO     | . initial setup = 5 s
[2026-03-12 21:17:34] 2026-03-13 01:16:53,767 | INFO     | . payload setup = 4 s
[2026-03-12 21:17:34] 2026-03-13 01:16:53,767 | INFO     | . stage-in = 0 s
[2026-03-12 21:17:34] 2026-03-13 01:16:53,767 | INFO     | . payload execution = 4087 s
[2026-03-12 21:17:34] 2026-03-13 01:16:53,767 | INFO     | . stage-out = 0 s
[2026-03-12 21:17:34] 2026-03-13 01:16:53,767 | INFO     | . log creation = 0 s
[2026-03-12 21:17:34] 2026-03-13 01:16:53,767 | INFO     | ..............................
[2026-03-12 21:17:34] 2026-03-13 01:16:54,355 | INFO     | 
[2026-03-12 21:17:34] 2026-03-13 01:16:54,356 | INFO     | job summary report
[2026-03-12 21:17:34] 2026-03-13 01:16:54,356 | INFO     | --------------------------------------------------
[2026-03-12 21:17:34] 2026-03-13 01:16:54,356 | INFO     | PanDA job id: 7051436687
[2026-03-12 21:17:34] 2026-03-13 01:16:54,356 | INFO     | task id: 48967085
[2026-03-12 21:17:34] 2026-03-13 01:16:54,356 | INFO     | errors: (none)
[2026-03-12 21:17:34] 2026-03-13 01:16:54,356 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 21:17:34] 2026-03-13 01:16:54,357 | INFO     | pilot state: finished 
[2026-03-12 21:17:34] 2026-03-13 01:16:54,357 | INFO     | transexitcode: 0
[2026-03-12 21:17:34] 2026-03-13 01:16:54,357 | INFO     | exeerrorcode: 0
[2026-03-12 21:17:34] 2026-03-13 01:16:54,357 | INFO     | exeerrordiag: 
[2026-03-12 21:17:34] 2026-03-13 01:16:54,357 | INFO     | exitcode: 0
[2026-03-12 21:17:34] 2026-03-13 01:16:54,357 | INFO     | exitmsg: OK
[2026-03-12 21:17:34] 2026-03-13 01:16:54,357 | INFO     | cpuconsumptiontime: 43020 s
[2026-03-12 21:17:34] 2026-03-13 01:16:54,357 | INFO     | nevents: 400
[2026-03-12 21:17:34] 2026-03-13 01:16:54,357 | INFO     | neventsw: 0
[2026-03-12 21:17:34] 2026-03-13 01:16:54,357 | INFO     | pid: 424014
[2026-03-12 21:17:34] 2026-03-13 01:16:54,358 | INFO     | pgrp: 424014
[2026-03-12 21:17:34] 2026-03-13 01:16:54,358 | INFO     | corecount: 12
[2026-03-12 21:17:34] 2026-03-13 01:16:54,358 | INFO     | event service: False
[2026-03-12 21:17:34] 2026-03-13 01:16:54,358 | INFO     | sizes: {0: 2280043, 1: 2280249, 11: 2280277, 4095: 2306218, 4097: 2315286, 4100: 2315424}
[2026-03-12 21:17:34] 2026-03-13 01:16:54,358 | INFO     | --------------------------------------------------
[2026-03-12 21:17:34] 2026-03-13 01:16:54,358 | INFO     | 
[2026-03-12 21:17:34] 2026-03-13 01:16:54,358 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-03-12 21:17:34] 2026-03-13 01:16:54,378 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,378 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,378 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,379 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,379 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,379 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,379 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,379 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,379 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,379 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,379 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,379 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,380 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,380 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,380 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,380 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,380 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,380 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 21:17:34] 2026-03-13 01:16:54,380 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,380 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 21:17:34] 2026-03-13 01:16:54,381 | INFO     | job 7051436687 has completed (purged errors)
[2026-03-12 21:17:34] 2026-03-13 01:16:54,381 | INFO     | overall cleanup function is called
[2026-03-12 21:17:34] 2026-03-13 01:16:55,389 | INFO     | --- collectZombieJob: --- 10, [424014]
[2026-03-12 21:17:34] 2026-03-13 01:16:55,390 | INFO     | zombie collector waiting for pid 424014
[2026-03-12 21:17:34] 2026-03-13 01:16:55,390 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 21:17:34] 2026-03-13 01:16:55,390 | INFO     | collected zombie processes
[2026-03-12 21:17:34] 2026-03-13 01:16:55,390 | INFO     | will attempt to kill all subprocesses of pid=424014
[2026-03-12 21:17:34] 2026-03-13 01:16:55,631 | INFO     | process IDs to be killed: [424014] (in reverse order)
[2026-03-12 21:17:34] 2026-03-13 01:16:55,697 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 21:17:34] 2026-03-13 01:16:55,697 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 21:17:34] 2026-03-13 01:16:55,703 | INFO     | did not find any defunct processes belonging to 424014
[2026-03-12 21:17:34] 2026-03-13 01:16:55,709 | INFO     | did not find any defunct processes belonging to 424014
[2026-03-12 21:17:34] 2026-03-13 01:16:55,709 | INFO     | ready for new job
[2026-03-12 21:17:34] 2026-03-13 01:16:55,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 21:17:34] 2026-03-13 01:16:55,711 | INFO     | **************************************
[2026-03-12 21:17:34] 2026-03-13 01:16:55,712 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-12 21:17:34] 2026-03-13 01:16:55,712 | INFO     | **************************************
[2026-03-12 21:17:34] 2026-03-13 01:16:55,712 | INFO     | 
[2026-03-12 21:17:34] 2026-03-13 01:16:55,734 | INFO     | architecture information:
[2026-03-12 21:17:34] 2026-03-13 01:16:55,734 | INFO     | executing command: cat /etc/os-release
[2026-03-12 21:17:34] 2026-03-13 01:16:55,745 | INFO     | cat /etc/os-release:
[2026-03-12 21:17:34] NAME="CentOS Linux"
[2026-03-12 21:17:34] VERSION="7 (Core)"
[2026-03-12 21:17:34] ID="centos"
[2026-03-12 21:17:34] ID_LIKE="rhel fedora"
[2026-03-12 21:17:34] VERSION_ID="7"
[2026-03-12 21:17:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 21:17:34] ANSI_COLOR="0;31"
[2026-03-12 21:17:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 21:17:34] HOME_URL="https://www.centos.org/"
[2026-03-12 21:17:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 21:17:34] 
[2026-03-12 21:17:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 21:17:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 21:17:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 21:17:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 21:17:34] 
[2026-03-12 21:17:34] 2026-03-13 01:16:55,745 | INFO     | **************************************
[2026-03-12 21:17:34] 2026-03-13 01:16:56,246 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-03-12 21:17:34] 2026-03-13 01:16:56,261 | INFO     | sufficient remaining disk space (398467268608 B)
[2026-03-12 21:17:34] 2026-03-13 01:16:56,262 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 21:17:34] 2026-03-13 01:16:56,262 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 21:17:34] 2026-03-13 01:16:56,262 | INFO     | update_server=False
[2026-03-12 21:17:34] 2026-03-13 01:16:56,262 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 21:17:34] 2026-03-13 01:16:56,262 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 21:17:34] 2026-03-13 01:16:56,676 | INFO     | all job control threads have been joined
[2026-03-12 21:17:34] 2026-03-13 01:16:56,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 21:17:34] 2026-03-13 01:16:56,846 | INFO     | all data control threads have been joined
[2026-03-12 21:17:34] 2026-03-13 01:16:57,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 21:17:34] 2026-03-13 01:16:57,264 | INFO     | aborting loop
[2026-03-12 21:17:34] 2026-03-13 01:16:57,268 | INFO     | [job] retrieve thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:57,364 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:57,490 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:57,567 | INFO     | all payload control threads have been joined
[2026-03-12 21:17:34] 2026-03-13 01:16:57,682 | INFO     | [job] control thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:57,736 | INFO     | [data] copytool_in thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:57,850 | INFO     | [data] control thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:58,008 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:58,091 | INFO     | [payload] validate_post thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:58,268 | INFO     | [data] copytool_out thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:58,269 | INFO     | [job] job monitor thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:58,486 | INFO     | [job] validate thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:58,570 | INFO     | [payload] control thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:58,686 | INFO     | [payload] failed_post thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:58,746 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:16:58,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 21:17:34] 2026-03-13 01:16:59,872 | INFO     | [job] queue monitor thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:17:00,802 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 21:17:34] 2026-03-13 01:17:26,755 | INFO     | PID=419222 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 21:17:34] 2026-03-13 01:17:26,755 | INFO     | .. there are 4 such processes running
[2026-03-12 21:17:34] 2026-03-13 01:17:26,756 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 21:17:34] 2026-03-13 01:17:26,756 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 21:17:34] 2026-03-13 01:17:26,756 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 21:17:34] 2026-03-13 01:17:27,866 | INFO     | [monitor] cgroup control has ended
[2026-03-12 21:17:34] 2026-03-13 01:17:29,258 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139688491337536)>', '<ExcThread(monitor, started 139687838611200)>']
[2026-03-12 21:17:34] 2026-03-13 01:17:29,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 21:17:34] 2026-03-13 01:17:29,772 | INFO     | [monitor] control thread has ended
[2026-03-12 21:17:34] 2026-03-13 01:17:34,268 | INFO     | all workflow threads have been joined
[2026-03-12 21:17:34] 2026-03-13 01:17:34,268 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 21:17:34] 2026-03-13 01:17:34,269 | INFO     | traces error code: 0
[2026-03-12 21:17:34] 2026-03-13 01:17:34,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 21:17:34] 2026-03-13 01:17:34,382 [wrapper] ==== pilot stdout END ====
[2026-03-12 21:17:34] 2026-03-13 01:17:34,385 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 21:17:34] 2026-03-13 01:17:34,387 [wrapper] pilotpid: 419222
[2026-03-12 21:17:34] 2026-03-13 01:17:34,389 [wrapper] Pilot exit status: 0
[2026-03-12 21:17:34] 2026-03-13 01:17:34,396 [wrapper] pandaids: 7051436687
[2026-03-12 21:17:34] 2026-03-13 01:17:34,437 [wrapper] cleanup supervisor_pilot  481648 419223
[2026-03-12 21:17:34] 2026-03-13 01:17:34,439 [wrapper] Test setup, not cleaning
[2026-03-12 21:17:34] 2026-03-13 01:17:34,442 [wrapper] apfmon messages muted
[2026-03-12 21:17:34] 2026-03-13 01:17:34,444 [wrapper] ==== wrapper stdout END ====
[2026-03-12 21:17:34] 2026-03-13 01:17:34,446 [wrapper] ==== wrapper stderr END ====
[2026-03-12 21:17:34]  *** Error codes and diagnostics ***
[2026-03-12 21:17:34]     "exeErrorCode": 0,
[2026-03-12 21:17:34]     "exeErrorDiag": "",
[2026-03-12 21:17:34]     "pilotErrorCode": 0,
[2026-03-12 21:17:34]     "pilotErrorDiag": "",
[2026-03-12 21:17:34]  *** Listing of results directory ***
[2026-03-12 21:17:34] total 406336
[2026-03-12 21:17:34] -rwx------ 1 boinc boinc     36322 Mar 12 03:36 runpilot2-wrapper.sh
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc    585013 Mar 12 03:36 pilot3.tar.gz
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc      5111 Mar 12 03:36 queuedata.json
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc       100 Mar 12 20:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 21:17:34] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 20:08 run_atlas
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc       105 Mar 12 20:08 job.xml
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc      7579 Mar 12 20:08 init_data.xml
[2026-03-12 21:17:34] -rw-r--r-- 2 boinc boinc 211529803 Mar 12 20:08 EVNT.48967083._000595.pool.root.1
[2026-03-12 21:17:34] -rw-r--r-- 2 boinc boinc     15845 Mar 12 20:08 start_atlas.sh
[2026-03-12 21:17:34] drwxrwx--x 2 boinc boinc      4096 Mar 12 20:08 shared
[2026-03-12 21:17:34] -rw-r--r-- 2 boinc boinc    597512 Mar 12 20:08 input.tar.gz
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc         0 Mar 12 20:08 boinc_lockfile
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc      2563 Mar 12 20:08 pandaJob.out
[2026-03-12 21:17:34] -rw------- 1 boinc boinc        50 Mar 12 20:08 setup.sh.local
[2026-03-12 21:17:34] -rw------- 1 boinc boinc   1006506 Mar 12 20:08 agis_schedconf.cvmfs.json
[2026-03-12 21:17:34] -rw------- 1 boinc boinc   1511578 Mar 12 20:08 agis_ddmendpoints.agis.ALL.json
[2026-03-12 21:17:34] -rw------- 1 boinc boinc       430 Mar 12 20:08 workernode_map.json
[2026-03-12 21:17:34] drwx------ 5 boinc boinc      4096 Mar 12 20:08 pilot3
[2026-03-12 21:17:34] -rw------- 1 boinc boinc 198603306 Mar 12 21:16 HITS.48967085._014603.pool.root.1
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc       529 Mar 12 21:16 boinc_task_state.xml
[2026-03-12 21:17:34] -rw------- 1 boinc boinc      1028 Mar 12 21:16 memory_monitor_summary.json
[2026-03-12 21:17:34] -rw------- 1 boinc boinc    387630 Mar 12 21:16 log.48967085._014603.job.log.tgz.1
[2026-03-12 21:17:34] -rw------- 1 boinc boinc      6334 Mar 12 21:16 heartbeat.json
[2026-03-12 21:17:34] -rw------- 1 boinc boinc        95 Mar 12 21:17 pilot_heartbeat.json
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc        27 Mar 12 21:17 wrapper_checkpoint.txt
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc      8192 Mar 12 21:17 boinc_mmap_file
[2026-03-12 21:17:34] -rw------- 1 boinc boinc      4826 Mar 12 21:17 pilotlog.txt
[2026-03-12 21:17:34] -rw------- 1 boinc boinc    618123 Mar 12 21:17 log.48967085._014603.job.log.1
[2026-03-12 21:17:34] -rw------- 1 boinc boinc       357 Mar 12 21:17 output.list
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc       620 Mar 12 21:17 runtime_log
[2026-03-12 21:17:34] -rw------- 1 boinc boinc   1024000 Mar 12 21:17 result.tar.gz
[2026-03-12 21:17:34] -rw------- 1 boinc boinc       650 Mar 12 21:17 zVtMDmGmpK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmtXjLDmRQCMln.diag
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc      9403 Mar 12 21:17 runtime_log.err
[2026-03-12 21:17:34] -rw-r--r-- 1 boinc boinc     21305 Mar 12 21:17 stderr.txt
[2026-03-12 21:17:34] HITS file was successfully produced:
[2026-03-12 21:17:34] -rw------- 1 boinc boinc 198603306 Mar 12 21:16 shared/HITS.pool.root.1
[2026-03-12 21:17:34]  *** Contents of shared directory: ***
[2026-03-12 21:17:34] total 402136
[2026-03-12 21:17:34] -rw-r--r-- 2 boinc boinc 211529803 Mar 12 20:08 ATLAS.root_0
[2026-03-12 21:17:34] -rw-r--r-- 2 boinc boinc     15845 Mar 12 20:08 start_atlas.sh
[2026-03-12 21:17:34] -rw-r--r-- 2 boinc boinc    597512 Mar 12 20:08 input.tar.gz
[2026-03-12 21:17:34] -rw------- 1 boinc boinc 198603306 Mar 12 21:16 HITS.pool.root.1
[2026-03-12 21:17:34] -rw------- 1 boinc boinc   1024000 Mar 12 21:17 result.tar.gz
21:17:36 (414845): run_atlas exited; CPU time 43104.342699
21:17:36 (414845): called boinc_finish(0)

</stderr_txt>
]]>

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