Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:29:08 (3368499): wrapper (7.7.26015): starting
13:29:08 (3368499): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 13:29:08] Arguments: --nthreads 3
[2026-03-13 13:29:08] Threads: 3
[2026-03-13 13:29:08] Checking for CVMFS
[2026-03-13 13:29:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 13:29:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 13:29:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 13:29:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 13:29:09] 2.9.2.0 45994 22782 89336 157240 3 49 30390029 36864001 0 130560 0 9360293 99.983 854382 5223 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 13:29:09] CVMFS is ok
[2026-03-13 13:29:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 13:29:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 13:29:09] Further information can be found at the LHC@home message board.
[2026-03-13 13:29:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 13:29:09] Checking for apptainer binary...
[2026-03-13 13:29:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 13:29:09] Running /usr/bin/apptainer --version
[2026-03-13 13:29:09] apptainer version 1.4.1-1.1
[2026-03-13 13:29:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 13:29:09] thA387a
[2026-03-13 13:29:09] apptainer works
[2026-03-13 13:29:09] Set ATHENA_PROC_NUMBER=3
[2026-03-13 13:29:09] Set ATHENA_CORE_NUMBER=3
[2026-03-13 13:29:09] Starting ATLAS job with PandaID=7037107896
[2026-03-13 13:29:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 15:03:31]  *** The last 200 lines of the pilot log: ***
[2026-03-13 15:03:31] 2026-03-13 14:02:52,983 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 15:03:31] 2026-03-13 14:02:52,983 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 15:03:31] 2026-03-13 14:02:52,983 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 15:03:31] 2026-03-13 14:02:52,983 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 15:03:31] 2026-03-13 14:02:52,983 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 15:03:31] 2026-03-13 14:02:52,983 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 15:03:31] 2026-03-13 14:02:52,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 15:03:31] 2026-03-13 14:02:52,983 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 15:03:31] 2026-03-13 14:02:52,984 | INFO     | job 7037107896 has completed (purged errors)
[2026-03-13 15:03:31] 2026-03-13 14:02:52,984 | INFO     | overall cleanup function is called
[2026-03-13 15:03:31] 2026-03-13 14:02:53,752 | INFO     | PID=3372534 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 15:03:31] 2026-03-13 14:02:53,990 | INFO     | --- collectZombieJob: --- 10, [3376961]
[2026-03-13 15:03:31] 2026-03-13 14:02:53,991 | INFO     | zombie collector waiting for pid 3376961
[2026-03-13 15:03:31] 2026-03-13 14:02:53,991 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 15:03:31] 2026-03-13 14:02:53,991 | INFO     | collected zombie processes
[2026-03-13 15:03:31] 2026-03-13 14:02:53,991 | INFO     | will attempt to kill all subprocesses of pid=3376961
[2026-03-13 15:03:31] 2026-03-13 14:02:54,029 | INFO     | process IDs to be killed: [3376961] (in reverse order)
[2026-03-13 15:03:31] 2026-03-13 14:02:54,053 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 15:03:31] 2026-03-13 14:02:54,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 15:03:31] 2026-03-13 14:02:54,054 | INFO     | did not find any defunct processes belonging to 3376961
[2026-03-13 15:03:31] 2026-03-13 14:02:54,055 | INFO     | did not find any defunct processes belonging to 3376961
[2026-03-13 15:03:31] 2026-03-13 14:02:54,055 | INFO     | ready for new job
[2026-03-13 15:03:31] 2026-03-13 14:02:54,055 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 15:03:31] 2026-03-13 14:02:54,056 | INFO     | **************************************
[2026-03-13 15:03:31] 2026-03-13 14:02:54,056 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 15:03:31] 2026-03-13 14:02:54,056 | INFO     | **************************************
[2026-03-13 15:03:31] 2026-03-13 14:02:54,056 | INFO     | 
[2026-03-13 15:03:31] 2026-03-13 14:02:54,057 | INFO     | architecture information:
[2026-03-13 15:03:31] 2026-03-13 14:02:54,057 | INFO     | executing command: cat /etc/os-release
[2026-03-13 15:03:31] 2026-03-13 14:02:54,065 | INFO     | cat /etc/os-release:
[2026-03-13 15:03:31] NAME="CentOS Linux"
[2026-03-13 15:03:31] VERSION="7 (Core)"
[2026-03-13 15:03:31] ID="centos"
[2026-03-13 15:03:31] ID_LIKE="rhel fedora"
[2026-03-13 15:03:31] VERSION_ID="7"
[2026-03-13 15:03:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 15:03:31] ANSI_COLOR="0;31"
[2026-03-13 15:03:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 15:03:31] HOME_URL="https://www.centos.org/"
[2026-03-13 15:03:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 15:03:31] 
[2026-03-13 15:03:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 15:03:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 15:03:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 15:03:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 15:03:31] 
[2026-03-13 15:03:31] 2026-03-13 14:02:54,066 | INFO     | **************************************
[2026-03-13 15:03:31] 2026-03-13 14:02:54,348 | WARNING  | process 3376961 can no longer be monitored (due to stat problems) - aborting
[2026-03-13 15:03:31] 2026-03-13 14:02:54,375 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 15:03:31] 2026-03-13 14:02:54,410 | INFO     | number of running child processes to parent process 3376961: 1
[2026-03-13 15:03:31] 2026-03-13 14:02:54,410 | INFO     | maximum number of monitored processes: 6
[2026-03-13 15:03:31] 2026-03-13 14:02:54,410 | INFO     | aborting job monitoring since job object (job id=7037107896) has expired
[2026-03-13 15:03:31] 2026-03-13 14:02:54,569 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 15:03:31] 2026-03-13 14:02:54,581 | INFO     | sufficient remaining disk space (225283407872 B)
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | INFO     | update_server=False
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | INFO     | will abort loop
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 15:03:31] 2026-03-13 14:02:54,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 15:03:31] 2026-03-13 14:02:54,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 15:03:31] 2026-03-13 14:02:54,768 | INFO     | all payload control threads have been joined
[2026-03-13 15:03:31] 2026-03-13 14:02:55,580 | INFO     | all data control threads have been joined
[2026-03-13 15:03:31] 2026-03-13 14:02:55,587 | INFO     | [job] retrieve thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:55,587 | INFO     | [job] queue monitor thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:55,588 | INFO     | [job] job monitor thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:55,593 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:55,605 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:55,751 | INFO     | [data] copytool_in thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:55,774 | INFO     | [payload] control thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:55,797 | INFO     | all job control threads have been joined
[2026-03-13 15:03:31] 2026-03-13 14:02:55,901 | INFO     | [payload] validate_post thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:56,585 | INFO     | [data] control thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:56,590 | INFO     | [data] copytool_out thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:56,670 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:56,803 | INFO     | [job] control thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:56,973 | INFO     | [payload] failed_post thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:56,976 | INFO     | [job] validate thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:02:57,902 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 15:03:31] 2026-03-13 14:03:01,909 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:03:05,265 | INFO     | job.realtimelogging is not enabled
[2026-03-13 15:03:31] 2026-03-13 14:03:06,270 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 15:03:31] 2026-03-13 14:03:26,636 | INFO     | [monitor] cgroup control has ended
[2026-03-13 15:03:31] 2026-03-13 14:03:26,657 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140309236614976)>', '<ExcThread(monitor, started 140308880791296)>']
[2026-03-13 15:03:31] 2026-03-13 14:03:26,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 15:03:31] 2026-03-13 14:03:26,742 | INFO     | [monitor] control thread has ended
[2026-03-13 15:03:31] 2026-03-13 14:03:31,681 | INFO     | all workflow threads have been joined
[2026-03-13 15:03:31] 2026-03-13 14:03:31,681 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 15:03:31] 2026-03-13 14:03:31,682 | INFO     | traces error code: 0
[2026-03-13 15:03:31] 2026-03-13 14:03:31,682 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 15:03:31] 2026-03-13 14:03:31,730 [wrapper] ==== pilot stdout END ====
[2026-03-13 15:03:31] 2026-03-13 14:03:31,732 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 15:03:31] 2026-03-13 14:03:31,735 [wrapper] pilotpid: 3372534
[2026-03-13 15:03:31] 2026-03-13 14:03:31,737 [wrapper] Pilot exit status: 0
[2026-03-13 15:03:31] 2026-03-13 14:03:31,744 [wrapper] pandaids: 7037107896
[2026-03-13 15:03:31] 2026-03-13 14:03:31,759 [wrapper] cleanup supervisor_pilot 3382693 3372535
[2026-03-13 15:03:31] 2026-03-13 14:03:31,762 [wrapper] Test setup, not cleaning
[2026-03-13 15:03:31] 2026-03-13 14:03:31,764 [wrapper] apfmon messages muted
[2026-03-13 15:03:31] 2026-03-13 14:03:31,766 [wrapper] ==== wrapper stdout END ====
[2026-03-13 15:03:31] 2026-03-13 14:03:31,769 [wrapper] ==== wrapper stderr END ====
[2026-03-13 15:03:31]  *** Error codes and diagnostics ***
[2026-03-13 15:03:31]     "exeErrorCode": 0,
[2026-03-13 15:03:31]     "exeErrorDiag": "",
[2026-03-13 15:03:31]     "pilotErrorCode": 0,
[2026-03-13 15:03:31]     "pilotErrorDiag": "",
[2026-03-13 15:03:31]  *** Listing of results directory ***
[2026-03-13 15:03:31] total 486300
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc      5111 Mar  4 03:44 queuedata.json
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc    584627 Mar  4 03:44 pilot3.tar.gz
[2026-03-13 15:03:31] -rwx------ 1 boinc boinc     36322 Mar  4 03:45 runpilot2-wrapper.sh
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc       100 Mar 13 13:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 15:03:31] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 13:29 run_atlas
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc       105 Mar 13 13:29 job.xml
[2026-03-13 15:03:31] -rw-r--r-- 2 boinc boinc 277828381 Mar 13 13:29 EVNT.48220221._000190.pool.root.1
[2026-03-13 15:03:31] -rw-r--r-- 2 boinc boinc    597957 Mar 13 13:29 input.tar.gz
[2026-03-13 15:03:31] -rw-r--r-- 2 boinc boinc     15845 Mar 13 13:29 start_atlas.sh
[2026-03-13 15:03:31] drwxrwx--x 2 boinc boinc      4096 Mar 13 13:29 shared
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc         0 Mar 13 13:29 boinc_setup_complete
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc      6439 Mar 13 13:29 init_data.xml
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc         0 Mar 13 13:29 boinc_lockfile
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc      2561 Mar 13 13:29 pandaJob.out
[2026-03-13 15:03:31] -rw------- 1 boinc boinc   1006473 Mar 13 13:29 agis_schedconf.cvmfs.json
[2026-03-13 15:03:31] -rw------- 1 boinc boinc   1511578 Mar 13 13:29 agis_ddmendpoints.agis.ALL.json
[2026-03-13 15:03:31] -rw------- 1 boinc boinc       427 Mar 13 13:29 workernode_map.json
[2026-03-13 15:03:31] drwx------ 5 boinc boinc      4096 Mar 13 13:29 pilot3
[2026-03-13 15:03:31] -rw------- 1 boinc boinc 214073947 Mar 13 15:02 HITS.48838586._004699.pool.root.1
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc       529 Mar 13 15:02 boinc_task_state.xml
[2026-03-13 15:03:31] -rw------- 1 boinc boinc        95 Mar 13 15:02 pilot_heartbeat.json
[2026-03-13 15:03:31] -rw------- 1 boinc boinc      1036 Mar 13 15:02 memory_monitor_summary.json
[2026-03-13 15:03:31] -rw------- 1 boinc boinc    251408 Mar 13 15:02 log.48838586._004699.job.log.tgz.1
[2026-03-13 15:03:31] -rw------- 1 boinc boinc      6317 Mar 13 15:02 heartbeat.json
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc        27 Mar 13 15:03 wrapper_checkpoint.txt
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc      8192 Mar 13 15:03 boinc_mmap_file
[2026-03-13 15:03:31] -rw------- 1 boinc boinc      5148 Mar 13 15:03 pilotlog.txt
[2026-03-13 15:03:31] -rw------- 1 boinc boinc    817923 Mar 13 15:03 log.48838586._004699.job.log.1
[2026-03-13 15:03:31] -rw------- 1 boinc boinc       357 Mar 13 15:03 output.list
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc       620 Mar 13 15:03 runtime_log
[2026-03-13 15:03:31] -rw------- 1 boinc boinc   1085440 Mar 13 15:03 result.tar.gz
[2026-03-13 15:03:31] -rw------- 1 boinc boinc       658 Mar 13 15:03 F9bMDmXPrH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmW9GLDmIg13tm.diag
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc      8901 Mar 13 15:03 runtime_log.err
[2026-03-13 15:03:31] -rw-r--r-- 1 boinc boinc     12489 Mar 13 15:03 stderr.txt
[2026-03-13 15:03:31] HITS file was successfully produced:
[2026-03-13 15:03:31] -rw------- 1 boinc boinc 214073947 Mar 13 15:02 shared/HITS.pool.root.1
[2026-03-13 15:03:31]  *** Contents of shared directory: ***
[2026-03-13 15:03:31] total 482048
[2026-03-13 15:03:31] -rw-r--r-- 2 boinc boinc 277828381 Mar 13 13:29 ATLAS.root_0
[2026-03-13 15:03:31] -rw-r--r-- 2 boinc boinc    597957 Mar 13 13:29 input.tar.gz
[2026-03-13 15:03:31] -rw-r--r-- 2 boinc boinc     15845 Mar 13 13:29 start_atlas.sh
[2026-03-13 15:03:31] -rw------- 1 boinc boinc 214073947 Mar 13 15:02 HITS.pool.root.1
[2026-03-13 15:03:31] -rw------- 1 boinc boinc   1085440 Mar 13 15:03 result.tar.gz
15:03:33 (3368499): run_atlas exited; CPU time 16139.085784
15:03:33 (3368499): called boinc_finish(0)

</stderr_txt>
]]>

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