Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:47:51 (26967): wrapper (7.7.26015): starting
00:47:51 (26967): wrapper: running run_atlas (--nthreads 4)
[2026-03-13 00:47:51] Arguments: --nthreads 4
[2026-03-13 00:47:51] Threads: 4
[2026-03-13 00:47:51] Checking for CVMFS
[2026-03-13 00:47:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 00:47:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 00:47:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 00:47:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 00:47:52] 2.9.2.0 4257 22111 102752 157220 2 50 36828943 36864000 0 130560 0 10278176 99.984 828808 12275 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 00:47:52] CVMFS is ok
[2026-03-13 00:47:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 00:47:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 00:47:52] Further information can be found at the LHC@home message board.
[2026-03-13 00:47:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 00:47:52] Checking for apptainer binary...
[2026-03-13 00:47:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 00:47:52] Running /usr/bin/apptainer --version
[2026-03-13 00:47:52] apptainer version 1.4.1-1.1
[2026-03-13 00:47:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 00:47:52] atlasA237
[2026-03-13 00:47:52] apptainer works
[2026-03-13 00:47:52] Set ATHENA_PROC_NUMBER=4
[2026-03-13 00:47:52] Set ATHENA_CORE_NUMBER=4
[2026-03-13 00:47:52] Starting ATLAS job with PandaID=7037093567
[2026-03-13 00:47:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 02:09:15]  *** The last 200 lines of the pilot log: ***
[2026-03-13 02:09:15] 2026-03-13 01:08:19,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 02:09:15] 2026-03-13 01:08:19,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 02:09:15] 2026-03-13 01:08:19,923 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 02:09:15] 2026-03-13 01:08:19,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 02:09:15] 2026-03-13 01:08:19,924 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 02:09:15] 2026-03-13 01:08:19,924 | INFO     | job 7037093567 has completed (purged errors)
[2026-03-13 02:09:15] 2026-03-13 01:08:19,924 | INFO     | overall cleanup function is called
[2026-03-13 02:09:15] 2026-03-13 01:08:20,930 | INFO     | --- collectZombieJob: --- 10, [35928]
[2026-03-13 02:09:15] 2026-03-13 01:08:20,930 | INFO     | zombie collector waiting for pid 35928
[2026-03-13 02:09:15] 2026-03-13 01:08:20,930 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 02:09:15] 2026-03-13 01:08:20,930 | INFO     | collected zombie processes
[2026-03-13 02:09:15] 2026-03-13 01:08:20,931 | INFO     | will attempt to kill all subprocesses of pid=35928
[2026-03-13 02:09:15] 2026-03-13 01:08:20,997 | INFO     | process IDs to be killed: [35928] (in reverse order)
[2026-03-13 02:09:15] 2026-03-13 01:08:21,036 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 02:09:15] 2026-03-13 01:08:21,036 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 02:09:15] 2026-03-13 01:08:21,038 | INFO     | did not find any defunct processes belonging to 35928
[2026-03-13 02:09:15] 2026-03-13 01:08:21,041 | INFO     | did not find any defunct processes belonging to 35928
[2026-03-13 02:09:15] 2026-03-13 01:08:21,041 | INFO     | ready for new job
[2026-03-13 02:09:15] 2026-03-13 01:08:21,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 02:09:15] 2026-03-13 01:08:21,041 | INFO     | **************************************
[2026-03-13 02:09:15] 2026-03-13 01:08:21,042 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 02:09:15] 2026-03-13 01:08:21,042 | INFO     | **************************************
[2026-03-13 02:09:15] 2026-03-13 01:08:21,042 | INFO     | 
[2026-03-13 02:09:15] 2026-03-13 01:08:21,042 | INFO     | architecture information:
[2026-03-13 02:09:15] 2026-03-13 01:08:21,042 | INFO     | executing command: cat /etc/os-release
[2026-03-13 02:09:15] 2026-03-13 01:08:21,055 | INFO     | cat /etc/os-release:
[2026-03-13 02:09:15] NAME="CentOS Linux"
[2026-03-13 02:09:15] VERSION="7 (Core)"
[2026-03-13 02:09:15] ID="centos"
[2026-03-13 02:09:15] ID_LIKE="rhel fedora"
[2026-03-13 02:09:15] VERSION_ID="7"
[2026-03-13 02:09:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 02:09:15] ANSI_COLOR="0;31"
[2026-03-13 02:09:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 02:09:15] HOME_URL="https://www.centos.org/"
[2026-03-13 02:09:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 02:09:15] 
[2026-03-13 02:09:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 02:09:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 02:09:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 02:09:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 02:09:15] 
[2026-03-13 02:09:15] 2026-03-13 01:08:21,056 | INFO     | **************************************
[2026-03-13 02:09:15] 2026-03-13 01:08:21,558 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 02:09:15] 2026-03-13 01:08:21,573 | INFO     | sufficient remaining disk space (320719552512 B)
[2026-03-13 02:09:15] 2026-03-13 01:08:21,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 02:09:15] 2026-03-13 01:08:21,574 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 02:09:15] 2026-03-13 01:08:21,574 | INFO     | update_server=False
[2026-03-13 02:09:15] 2026-03-13 01:08:21,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 02:09:15] 2026-03-13 01:08:21,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 02:09:15] 2026-03-13 01:08:21,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 02:09:15] 2026-03-13 01:08:21,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 02:09:15] 2026-03-13 01:08:21,574 | INFO     | aborting loop
[2026-03-13 02:09:15] 2026-03-13 01:08:21,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 02:09:15] 2026-03-13 01:08:22,507 | INFO     | all data control threads have been joined
[2026-03-13 02:09:15] 2026-03-13 01:08:22,575 | INFO     | [job] retrieve thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:22,579 | INFO     | [job] queue monitor thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:22,579 | INFO     | [job] job monitor thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:22,820 | INFO     | [payload] failed_post thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:22,851 | INFO     | all payload control threads have been joined
[2026-03-13 02:09:15] 2026-03-13 01:08:23,177 | INFO     | all job control threads have been joined
[2026-03-13 02:09:15] 2026-03-13 01:08:23,196 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:23,229 | INFO     | [job] validate thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:23,315 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:23,417 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:23,513 | INFO     | [data] control thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:23,537 | INFO     | [payload] validate_post thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:23,581 | INFO     | [data] copytool_out thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:23,588 | INFO     | [data] copytool_in thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:23,857 | INFO     | [payload] control thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:24,183 | INFO     | [job] control thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:25,581 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:32,555 | INFO     | job.realtimelogging is not enabled
[2026-03-13 02:09:15] 2026-03-13 01:08:33,561 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 02:09:15] 2026-03-13 01:08:52,578 | INFO     | PID=31158 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 02:09:15] 2026-03-13 01:08:52,579 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 02:09:15] 2026-03-13 01:08:52,579 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 02:09:15] 2026-03-13 01:08:52,579 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 02:09:15] 2026-03-13 01:09:09,245 | INFO     | [monitor] cgroup control has ended
[2026-03-13 02:09:15] 2026-03-13 01:09:10,154 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140092601575232)>', '<ExcThread(monitor, started 140091800401664)>']
[2026-03-13 02:09:15] 2026-03-13 01:09:10,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 02:09:15] 2026-03-13 01:09:10,665 | INFO     | [monitor] control thread has ended
[2026-03-13 02:09:15] 2026-03-13 01:09:15,180 | INFO     | all workflow threads have been joined
[2026-03-13 02:09:15] 2026-03-13 01:09:15,180 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 02:09:15] 2026-03-13 01:09:15,180 | INFO     | traces error code: 0
[2026-03-13 02:09:15] 2026-03-13 01:09:15,180 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 02:09:15] 2026-03-13 01:09:15,248 [wrapper] ==== pilot stdout END ====
[2026-03-13 02:09:15] 2026-03-13 01:09:15,252 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 02:09:15] 2026-03-13 01:09:15,255 [wrapper] pilotpid: 31158
[2026-03-13 02:09:15] 2026-03-13 01:09:15,258 [wrapper] Pilot exit status: 0
[2026-03-13 02:09:15] 2026-03-13 01:09:15,268 [wrapper] pandaids: 7037093567
[2026-03-13 02:09:15] 2026-03-13 01:09:15,294 [wrapper] cleanup supervisor_pilot   64198 31159
[2026-03-13 02:09:15] 2026-03-13 01:09:15,297 [wrapper] Test setup, not cleaning
[2026-03-13 02:09:15] 2026-03-13 01:09:15,301 [wrapper] apfmon messages muted
[2026-03-13 02:09:15] 2026-03-13 01:09:15,304 [wrapper] ==== wrapper stdout END ====
[2026-03-13 02:09:15] 2026-03-13 01:09:15,308 [wrapper] ==== wrapper stderr END ====
[2026-03-13 02:09:15]  *** Error codes and diagnostics ***
[2026-03-13 02:09:15]     "exeErrorCode": 0,
[2026-03-13 02:09:15]     "exeErrorDiag": "",
[2026-03-13 02:09:15]     "pilotErrorCode": 0,
[2026-03-13 02:09:15]     "pilotErrorDiag": "",
[2026-03-13 02:09:15]  *** Listing of results directory ***
[2026-03-13 02:09:15] total 500668
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc    584627 Mar  4 02:58 pilot3.tar.gz
[2026-03-13 02:09:15] -rwx------ 1 boinc boinc     36322 Mar  4 03:02 runpilot2-wrapper.sh
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc      5111 Mar  4 03:03 queuedata.json
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc       100 Mar 13 00:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 02:09:15] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 00:47 run_atlas
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc       105 Mar 13 00:47 job.xml
[2026-03-13 02:09:15] -rw-r--r-- 2 boinc boinc 294640440 Mar 13 00:47 EVNT.48717157._000049.pool.root.1
[2026-03-13 02:09:15] drwxrwx--x 2 boinc boinc      4096 Mar 13 00:47 shared
[2026-03-13 02:09:15] -rw-r--r-- 2 boinc boinc    597958 Mar 13 00:47 input.tar.gz
[2026-03-13 02:09:15] -rw-r--r-- 2 boinc boinc     15845 Mar 13 00:47 start_atlas.sh
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc         0 Mar 13 00:47 boinc_setup_complete
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc      6371 Mar 13 00:47 init_data.xml
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc         0 Mar 13 00:47 boinc_lockfile
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc      2595 Mar 13 00:47 pandaJob.out
[2026-03-13 02:09:15] -rw------- 1 boinc boinc   1006506 Mar 13 00:47 agis_schedconf.cvmfs.json
[2026-03-13 02:09:15] -rw------- 1 boinc boinc   1511578 Mar 13 00:47 agis_ddmendpoints.agis.ALL.json
[2026-03-13 02:09:15] -rw------- 1 boinc boinc       421 Mar 13 00:48 workernode_map.json
[2026-03-13 02:09:15] drwx------ 5 boinc boinc      4096 Mar 13 00:48 pilot3
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc       529 Mar 13 02:07 boinc_task_state.xml
[2026-03-13 02:09:15] -rw------- 1 boinc boinc 212187556 Mar 13 02:07 HITS.48878057._001211.pool.root.1
[2026-03-13 02:09:15] -rw------- 1 boinc boinc      1025 Mar 13 02:08 memory_monitor_summary.json
[2026-03-13 02:09:15] -rw------- 1 boinc boinc    264837 Mar 13 02:08 log.48878057._001211.job.log.tgz.1
[2026-03-13 02:09:15] -rw------- 1 boinc boinc      6316 Mar 13 02:08 heartbeat.json
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc      8192 Mar 13 02:08 boinc_mmap_file
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc        27 Mar 13 02:08 wrapper_checkpoint.txt
[2026-03-13 02:09:15] -rw------- 1 boinc boinc        95 Mar 13 02:08 pilot_heartbeat.json
[2026-03-13 02:09:15] -rw------- 1 boinc boinc      4818 Mar 13 02:09 pilotlog.txt
[2026-03-13 02:09:15] -rw------- 1 boinc boinc    703888 Mar 13 02:09 log.48878057._001211.job.log.1
[2026-03-13 02:09:15] -rw------- 1 boinc boinc       357 Mar 13 02:09 output.list
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc       620 Mar 13 02:09 runtime_log
[2026-03-13 02:09:15] -rw------- 1 boinc boinc    983040 Mar 13 02:09 result.tar.gz
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc      8911 Mar 13 02:09 runtime_log.err
[2026-03-13 02:09:15] -rw------- 1 boinc boinc       660 Mar 13 02:09 GIuKDmYkqH9n9Rq4apOajLDm4fhM0noT9bVooX4SDma6GLDm04D46n.diag
[2026-03-13 02:09:15] -rw-r--r-- 1 boinc boinc     11390 Mar 13 02:09 stderr.txt
[2026-03-13 02:09:15] HITS file was successfully produced:
[2026-03-13 02:09:15] -rw------- 1 boinc boinc 212187556 Mar 13 02:07 shared/HITS.pool.root.1
[2026-03-13 02:09:15]  *** Contents of shared directory: ***
[2026-03-13 02:09:15] total 496520
[2026-03-13 02:09:15] -rw-r--r-- 2 boinc boinc 294640440 Mar 13 00:47 ATLAS.root_0
[2026-03-13 02:09:15] -rw-r--r-- 2 boinc boinc    597958 Mar 13 00:47 input.tar.gz
[2026-03-13 02:09:15] -rw-r--r-- 2 boinc boinc     15845 Mar 13 00:47 start_atlas.sh
[2026-03-13 02:09:15] -rw------- 1 boinc boinc 212187556 Mar 13 02:07 HITS.pool.root.1
[2026-03-13 02:09:15] -rw------- 1 boinc boinc    983040 Mar 13 02:09 result.tar.gz
02:09:16 (26967): run_atlas exited; CPU time 18160.895043
02:09:16 (26967): called boinc_finish(0)

</stderr_txt>
]]>

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