Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:19:08 (51520): wrapper (7.7.26015): starting
23:19:08 (51520): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 23:19:08] Arguments: --nthreads 4
[2026-03-12 23:19:08] Threads: 4
[2026-03-12 23:19:08] Checking for CVMFS
[2026-03-12 23:19:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 23:19:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 23:19:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 23:19:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 23:19:08] 2.9.2.0 49711 22113 108148 157217 3 9 26730287 36864000 0 130560 0 11625131 99.986 835929 13013 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 23:19:08] CVMFS is ok
[2026-03-12 23:19:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 23:19:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 23:19:08] Further information can be found at the LHC@home message board.
[2026-03-12 23:19:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 23:19:08] Checking for apptainer binary...
[2026-03-12 23:19:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 23:19:08] Running /usr/bin/apptainer --version
[2026-03-12 23:19:08] apptainer version 1.4.1-1.1
[2026-03-12 23:19:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 23:19:08] thA317a
[2026-03-12 23:19:08] apptainer works
[2026-03-12 23:19:08] Set ATHENA_PROC_NUMBER=4
[2026-03-12 23:19:08] Set ATHENA_CORE_NUMBER=4
[2026-03-12 23:19:08] Starting ATLAS job with PandaID=7037108036
[2026-03-12 23:19:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 00:31:30]  *** The last 200 lines of the pilot log: ***
[2026-03-13 00:31:30] 2026-03-12 23:30:23,236 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 00:31:30] 2026-03-12 23:30:23,236 | INFO     | job 7037108036 has completed (purged errors)
[2026-03-13 00:31:30] 2026-03-12 23:30:23,236 | INFO     | overall cleanup function is called
[2026-03-13 00:31:30] 2026-03-12 23:30:24,242 | INFO     | --- collectZombieJob: --- 10, [60120]
[2026-03-13 00:31:30] 2026-03-12 23:30:24,243 | INFO     | zombie collector waiting for pid 60120
[2026-03-13 00:31:30] 2026-03-12 23:30:24,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 00:31:30] 2026-03-12 23:30:24,243 | INFO     | collected zombie processes
[2026-03-13 00:31:30] 2026-03-12 23:30:24,243 | INFO     | will attempt to kill all subprocesses of pid=60120
[2026-03-13 00:31:30] 2026-03-12 23:30:24,302 | INFO     | process IDs to be killed: [60120] (in reverse order)
[2026-03-13 00:31:30] 2026-03-12 23:30:24,336 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 00:31:30] 2026-03-12 23:30:24,336 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 00:31:30] 2026-03-12 23:30:24,338 | INFO     | did not find any defunct processes belonging to 60120
[2026-03-13 00:31:30] 2026-03-12 23:30:24,339 | INFO     | did not find any defunct processes belonging to 60120
[2026-03-13 00:31:30] 2026-03-12 23:30:24,339 | INFO     | ready for new job
[2026-03-13 00:31:30] 2026-03-12 23:30:24,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 00:31:30] 2026-03-12 23:30:24,340 | INFO     | **************************************
[2026-03-13 00:31:30] 2026-03-12 23:30:24,340 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-13 00:31:30] 2026-03-12 23:30:24,340 | INFO     | **************************************
[2026-03-13 00:31:30] 2026-03-12 23:30:24,340 | INFO     | 
[2026-03-13 00:31:30] 2026-03-12 23:30:24,341 | INFO     | architecture information:
[2026-03-13 00:31:30] 2026-03-12 23:30:24,341 | INFO     | executing command: cat /etc/os-release
[2026-03-13 00:31:30] 2026-03-12 23:30:24,352 | INFO     | cat /etc/os-release:
[2026-03-13 00:31:30] NAME="CentOS Linux"
[2026-03-13 00:31:30] VERSION="7 (Core)"
[2026-03-13 00:31:30] ID="centos"
[2026-03-13 00:31:30] ID_LIKE="rhel fedora"
[2026-03-13 00:31:30] VERSION_ID="7"
[2026-03-13 00:31:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 00:31:30] ANSI_COLOR="0;31"
[2026-03-13 00:31:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 00:31:30] HOME_URL="https://www.centos.org/"
[2026-03-13 00:31:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 00:31:30] 
[2026-03-13 00:31:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 00:31:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 00:31:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 00:31:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 00:31:30] 
[2026-03-13 00:31:30] 2026-03-12 23:30:24,352 | INFO     | **************************************
[2026-03-13 00:31:30] 2026-03-12 23:30:24,855 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 00:31:30] 2026-03-12 23:30:24,870 | INFO     | sufficient remaining disk space (231194230784 B)
[2026-03-13 00:31:30] 2026-03-12 23:30:24,870 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 00:31:30] 2026-03-12 23:30:24,870 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 00:31:30] 2026-03-12 23:30:24,870 | INFO     | update_server=False
[2026-03-13 00:31:30] 2026-03-12 23:30:24,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 00:31:30] 2026-03-12 23:30:24,870 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 00:31:30] 2026-03-12 23:30:24,979 | INFO     | all job control threads have been joined
[2026-03-13 00:31:30] 2026-03-12 23:30:25,046 | WARNING  | process 60120 can no longer be monitored (due to stat problems) - aborting
[2026-03-13 00:31:30] 2026-03-12 23:30:25,088 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 00:31:30] 2026-03-12 23:30:25,088 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 00:31:30] 2026-03-12 23:30:25,088 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-13 00:31:30] 2026-03-12 23:30:25,088 | WARNING  | maxPSS not found in memory monitor output
[2026-03-13 00:31:30] 2026-03-12 23:30:25,089 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7037108036/payload.stdout) since it has not been created yet
[2026-03-13 00:31:30] 2026-03-12 23:30:25,089 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 00:31:30] 2026-03-12 23:30:25,100 | INFO     | sufficient remaining disk space (231194230784 B)
[2026-03-13 00:31:30] 2026-03-12 23:30:25,100 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-13 00:31:30] 2026-03-12 23:30:25,100 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7037108036/HITS.48838586._004839.pool.root.1 since it does not exist
[2026-03-13 00:31:30] 2026-03-12 23:30:25,157 | INFO     | number of running child processes to parent process 60120: 1
[2026-03-13 00:31:30] 2026-03-12 23:30:25,157 | INFO     | maximum number of monitored processes: 6
[2026-03-13 00:31:30] 2026-03-12 23:30:25,157 | INFO     | aborting job monitoring since job object (job id=7037108036) has expired
[2026-03-13 00:31:30] 2026-03-12 23:30:25,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 00:31:30] 2026-03-12 23:30:25,158 | INFO     | will abort loop
[2026-03-13 00:31:30] 2026-03-12 23:30:25,325 | INFO     | all payload control threads have been joined
[2026-03-13 00:31:30] 2026-03-12 23:30:25,875 | INFO     | [job] retrieve thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:25,875 | INFO     | [job] queue monitor thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:25,890 | INFO     | all data control threads have been joined
[2026-03-13 00:31:30] 2026-03-12 23:30:25,939 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:25,968 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 00:31:30] 2026-03-12 23:30:25,985 | INFO     | [job] control thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:26,001 | INFO     | [payload] failed_post thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:26,163 | INFO     | [job] job monitor thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:26,330 | INFO     | [payload] control thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:26,587 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:26,587 | INFO     | [job] validate thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:26,656 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:26,766 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:26,800 | INFO     | [data] copytool_in thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:26,895 | INFO     | [data] control thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:27,201 | INFO     | [payload] validate_post thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:27,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 00:31:30] 2026-03-12 23:30:27,974 | INFO     | [data] copytool_out thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:31,347 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 00:31:30] 2026-03-12 23:30:55,979 | INFO     | PID=55625 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 00:31:30] 2026-03-12 23:30:55,980 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 00:31:30] 2026-03-12 23:30:55,980 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 00:31:30] 2026-03-12 23:30:55,980 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 00:31:30] 2026-03-12 23:31:24,636 | INFO     | [monitor] cgroup control has ended
[2026-03-13 00:31:30] 2026-03-12 23:31:25,517 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139845538101056)>', '<ExcThread(monitor, started 139844672026368)>']
[2026-03-13 00:31:30] 2026-03-12 23:31:26,128 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 00:31:30] 2026-03-12 23:31:26,128 | INFO     | [monitor] control thread has ended
[2026-03-13 00:31:30] 2026-03-12 23:31:30,543 | INFO     | all workflow threads have been joined
[2026-03-13 00:31:30] 2026-03-12 23:31:30,543 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 00:31:30] 2026-03-12 23:31:30,543 | INFO     | traces error code: 0
[2026-03-13 00:31:30] 2026-03-12 23:31:30,543 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 00:31:30] 2026-03-12 23:31:30,593 [wrapper] ==== pilot stdout END ====
[2026-03-13 00:31:30] 2026-03-12 23:31:30,597 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 00:31:30] 2026-03-12 23:31:30,599 [wrapper] pilotpid: 55625
[2026-03-13 00:31:30] 2026-03-12 23:31:30,602 [wrapper] Pilot exit status: 0
[2026-03-13 00:31:30] 2026-03-12 23:31:30,610 [wrapper] pandaids: 7037108036
[2026-03-13 00:31:30] 2026-03-12 23:31:30,632 [wrapper] cleanup supervisor_pilot   65692 55626
[2026-03-13 00:31:30] 2026-03-12 23:31:30,635 [wrapper] Test setup, not cleaning
[2026-03-13 00:31:30] 2026-03-12 23:31:30,637 [wrapper] apfmon messages muted
[2026-03-13 00:31:30] 2026-03-12 23:31:30,640 [wrapper] ==== wrapper stdout END ====
[2026-03-13 00:31:30] 2026-03-12 23:31:30,642 [wrapper] ==== wrapper stderr END ====
[2026-03-13 00:31:30]  *** Error codes and diagnostics ***
[2026-03-13 00:31:30]     "exeErrorCode": 0,
[2026-03-13 00:31:30]     "exeErrorDiag": "",
[2026-03-13 00:31:30]     "pilotErrorCode": 0,
[2026-03-13 00:31:30]     "pilotErrorDiag": "",
[2026-03-13 00:31:30]  *** Listing of results directory ***
[2026-03-13 00:31:30] total 480436
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc      5111 Mar  4 03:44 queuedata.json
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc    584627 Mar  4 03:44 pilot3.tar.gz
[2026-03-13 00:31:30] -rwx------ 1 boinc boinc     36322 Mar  4 03:45 runpilot2-wrapper.sh
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc       100 Mar 12 23:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 00:31:30] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 23:19 run_atlas
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc       105 Mar 12 23:19 job.xml
[2026-03-13 00:31:30] -rw-r--r-- 2 boinc boinc 276167881 Mar 12 23:19 EVNT.48220221._000195.pool.root.1
[2026-03-13 00:31:30] -rw-r--r-- 2 boinc boinc    597967 Mar 12 23:19 input.tar.gz
[2026-03-13 00:31:30] -rw-r--r-- 2 boinc boinc     15845 Mar 12 23:19 start_atlas.sh
[2026-03-13 00:31:30] drwxrwx--x 2 boinc boinc      4096 Mar 12 23:19 shared
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc         0 Mar 12 23:19 boinc_setup_complete
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc      6439 Mar 12 23:19 init_data.xml
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc         0 Mar 12 23:19 boinc_lockfile
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc      2562 Mar 12 23:19 pandaJob.out
[2026-03-13 00:31:30] -rw------- 1 boinc boinc   1006498 Mar 12 23:19 agis_schedconf.cvmfs.json
[2026-03-13 00:31:30] -rw------- 1 boinc boinc   1511578 Mar 12 23:19 agis_ddmendpoints.agis.ALL.json
[2026-03-13 00:31:30] -rw------- 1 boinc boinc       418 Mar 12 23:19 workernode_map.json
[2026-03-13 00:31:30] drwx------ 5 boinc boinc      4096 Mar 12 23:19 pilot3
[2026-03-13 00:31:30] -rw------- 1 boinc boinc 210080211 Mar 13 00:30 HITS.48838586._004839.pool.root.1
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc       529 Mar 13 00:30 boinc_task_state.xml
[2026-03-13 00:31:30] -rw------- 1 boinc boinc      1018 Mar 13 00:30 memory_monitor_summary.json
[2026-03-13 00:31:30] -rw------- 1 boinc boinc    262470 Mar 13 00:30 log.48838586._004839.job.log.tgz.1
[2026-03-13 00:31:30] -rw------- 1 boinc boinc      6297 Mar 13 00:30 heartbeat.json
[2026-03-13 00:31:30] -rw------- 1 boinc boinc        95 Mar 13 00:30 pilot_heartbeat.json
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc      8192 Mar 13 00:31 boinc_mmap_file
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc        27 Mar 13 00:31 wrapper_checkpoint.txt
[2026-03-13 00:31:30] -rw------- 1 boinc boinc      6243 Mar 13 00:31 pilotlog.txt
[2026-03-13 00:31:30] -rw------- 1 boinc boinc    630026 Mar 13 00:31 log.48838586._004839.job.log.1
[2026-03-13 00:31:30] -rw------- 1 boinc boinc       357 Mar 13 00:31 output.list
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc       620 Mar 13 00:31 runtime_log
[2026-03-13 00:31:30] -rw------- 1 boinc boinc    911360 Mar 13 00:31 result.tar.gz
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc      8901 Mar 13 00:31 runtime_log.err
[2026-03-13 00:31:30] -rw------- 1 boinc boinc       658 Mar 13 00:31 FOkMDmgPrH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJ8ILDm6RAugm.diag
[2026-03-13 00:31:30] -rw-r--r-- 1 boinc boinc     12669 Mar 13 00:31 stderr.txt
[2026-03-13 00:31:30] HITS file was successfully produced:
[2026-03-13 00:31:30] -rw------- 1 boinc boinc 210080211 Mar 13 00:30 shared/HITS.pool.root.1
[2026-03-13 00:31:30]  *** Contents of shared directory: ***
[2026-03-13 00:31:30] total 476356
[2026-03-13 00:31:30] -rw-r--r-- 2 boinc boinc 276167881 Mar 12 23:19 ATLAS.root_0
[2026-03-13 00:31:30] -rw-r--r-- 2 boinc boinc    597967 Mar 12 23:19 input.tar.gz
[2026-03-13 00:31:30] -rw-r--r-- 2 boinc boinc     15845 Mar 12 23:19 start_atlas.sh
[2026-03-13 00:31:30] -rw------- 1 boinc boinc 210080211 Mar 13 00:30 HITS.pool.root.1
[2026-03-13 00:31:30] -rw------- 1 boinc boinc    911360 Mar 13 00:31 result.tar.gz
00:31:31 (51520): run_atlas exited; CPU time 16126.999432
00:31:31 (51520): called boinc_finish(0)

</stderr_txt>
]]>

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