Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:22:30 (3177449): wrapper (7.7.26015): starting
22:22:30 (3177449): wrapper: running run_atlas (--nthreads 3)
[2026-03-12 22:22:30] Arguments: --nthreads 3
[2026-03-12 22:22:30] Threads: 3
[2026-03-12 22:22:30] Checking for CVMFS
[2026-03-12 22:22:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 22:22:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 22:22:30] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 22:22:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 22:22:31] 2.9.2.0 43448 21930 89276 157215 2 49 35091807 36864001 0 130560 0 8767270 99.982 819130 11843 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-12 22:22:31] CVMFS is ok
[2026-03-12 22:22:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 22:22:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 22:22:31] Further information can be found at the LHC@home message board.
[2026-03-12 22:22:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 22:22:31] Checking for apptainer binary...
[2026-03-12 22:22:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 22:22:31] Running /usr/bin/apptainer --version
[2026-03-12 22:22:31] apptainer version 1.4.1-1.1
[2026-03-12 22:22:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 22:22:31] cosA127b
[2026-03-12 22:22:31] apptainer works
[2026-03-12 22:22:31] Set ATHENA_PROC_NUMBER=3
[2026-03-12 22:22:31] Set ATHENA_CORE_NUMBER=3
[2026-03-12 22:22:31] Starting ATLAS job with PandaID=7037090682
[2026-03-12 22:22:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 23:53:06]  *** The last 200 lines of the pilot log: ***
[2026-03-12 23:53:06] 2026-03-12 22:52:33,585 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 23:53:06] 2026-03-12 22:52:33,585 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 23:53:06] 2026-03-12 22:52:33,585 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 23:53:06] 2026-03-12 22:52:33,585 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 23:53:06] 2026-03-12 22:52:33,585 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 23:53:06] 2026-03-12 22:52:33,585 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 23:53:06] 2026-03-12 22:52:33,585 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 23:53:06] 2026-03-12 22:52:33,586 | INFO     | job 7037090682 has completed (purged errors)
[2026-03-12 23:53:06] 2026-03-12 22:52:33,586 | INFO     | overall cleanup function is called
[2026-03-12 23:53:06] 2026-03-12 22:52:33,887 | INFO     | PID=3181489 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 23:53:06] 2026-03-12 22:52:34,592 | INFO     | --- collectZombieJob: --- 10, [3185918]
[2026-03-12 23:53:06] 2026-03-12 22:52:34,592 | INFO     | zombie collector waiting for pid 3185918
[2026-03-12 23:53:06] 2026-03-12 22:52:34,592 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 23:53:06] 2026-03-12 22:52:34,592 | INFO     | collected zombie processes
[2026-03-12 23:53:06] 2026-03-12 22:52:34,593 | INFO     | will attempt to kill all subprocesses of pid=3185918
[2026-03-12 23:53:06] 2026-03-12 22:52:34,633 | INFO     | process IDs to be killed: [3185918] (in reverse order)
[2026-03-12 23:53:06] 2026-03-12 22:52:34,657 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 23:53:06] 2026-03-12 22:52:34,657 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 23:53:06] 2026-03-12 22:52:34,658 | INFO     | did not find any defunct processes belonging to 3185918
[2026-03-12 23:53:06] 2026-03-12 22:52:34,659 | INFO     | did not find any defunct processes belonging to 3185918
[2026-03-12 23:53:06] 2026-03-12 22:52:34,659 | INFO     | ready for new job
[2026-03-12 23:53:06] 2026-03-12 22:52:34,659 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 23:53:06] 2026-03-12 22:52:34,660 | INFO     | **************************************
[2026-03-12 23:53:06] 2026-03-12 22:52:34,660 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 23:53:06] 2026-03-12 22:52:34,660 | INFO     | **************************************
[2026-03-12 23:53:06] 2026-03-12 22:52:34,660 | INFO     | 
[2026-03-12 23:53:06] 2026-03-12 22:52:34,660 | INFO     | architecture information:
[2026-03-12 23:53:06] 2026-03-12 22:52:34,660 | INFO     | executing command: cat /etc/os-release
[2026-03-12 23:53:06] 2026-03-12 22:52:34,670 | INFO     | cat /etc/os-release:
[2026-03-12 23:53:06] NAME="CentOS Linux"
[2026-03-12 23:53:06] VERSION="7 (Core)"
[2026-03-12 23:53:06] ID="centos"
[2026-03-12 23:53:06] ID_LIKE="rhel fedora"
[2026-03-12 23:53:06] VERSION_ID="7"
[2026-03-12 23:53:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 23:53:06] ANSI_COLOR="0;31"
[2026-03-12 23:53:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 23:53:06] HOME_URL="https://www.centos.org/"
[2026-03-12 23:53:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 23:53:06] 
[2026-03-12 23:53:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 23:53:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 23:53:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 23:53:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 23:53:06] 
[2026-03-12 23:53:06] 2026-03-12 22:52:34,670 | INFO     | **************************************
[2026-03-12 23:53:06] 2026-03-12 22:52:35,173 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-12 23:53:06] 2026-03-12 22:52:35,187 | INFO     | sufficient remaining disk space (323469967360 B)
[2026-03-12 23:53:06] 2026-03-12 22:52:35,187 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 23:53:06] 2026-03-12 22:52:35,187 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 23:53:06] 2026-03-12 22:52:35,187 | INFO     | update_server=False
[2026-03-12 23:53:06] 2026-03-12 22:52:35,187 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 23:53:06] 2026-03-12 22:52:35,187 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 23:53:06] 2026-03-12 22:52:35,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 23:53:06] 2026-03-12 22:52:35,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 23:53:06] 2026-03-12 22:52:35,557 | INFO     | aborting loop
[2026-03-12 23:53:06] 2026-03-12 22:52:36,034 | INFO     | all data control threads have been joined
[2026-03-12 23:53:06] 2026-03-12 22:52:36,193 | INFO     | [job] retrieve thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:36,193 | INFO     | [job] queue monitor thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:36,287 | INFO     | all payload control threads have been joined
[2026-03-12 23:53:06] 2026-03-12 22:52:36,562 | INFO     | [job] job monitor thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:36,729 | INFO     | all job control threads have been joined
[2026-03-12 23:53:06] 2026-03-12 22:52:36,892 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-03-12 23:53:06] 2026-03-12 22:52:36,946 | INFO     | [payload] failed_post thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:37,040 | INFO     | [data] control thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:37,293 | INFO     | [payload] control thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:37,316 | INFO     | [job] validate thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:37,339 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:37,394 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:37,395 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:37,532 | INFO     | [data] copytool_in thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:37,539 | INFO     | [data] copytool_out thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:37,671 | INFO     | [payload] validate_post thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:37,735 | INFO     | [job] control thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:38,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 23:53:06] 2026-03-12 22:52:42,571 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:45,947 | INFO     | job.realtimelogging is not enabled
[2026-03-12 23:53:06] 2026-03-12 22:52:46,613 | INFO     | [monitor] cgroup control has ended
[2026-03-12 23:53:06] 2026-03-12 22:52:46,953 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 23:53:06] 2026-03-12 22:52:47,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140633636951872)>', '<ExcThread(monitor, started 140632924350208)>']
[2026-03-12 23:53:06] 2026-03-12 22:52:52,118 | INFO     | all workflow threads have been joined
[2026-03-12 23:53:06] 2026-03-12 22:52:52,119 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 23:53:06] 2026-03-12 22:52:52,119 | INFO     | traces error code: 0
[2026-03-12 23:53:06] 2026-03-12 22:52:52,119 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 23:53:06] 2026-03-12 22:53:05,993 | INFO     | PID=3181489 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 23:53:06] 2026-03-12 22:53:05,993 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 23:53:06] 2026-03-12 22:53:05,993 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 23:53:06] 2026-03-12 22:53:05,993 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 23:53:06] 2026-03-12 22:53:05,993 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 23:53:06] 2026-03-12 22:53:05,993 | INFO     | [monitor] control thread has ended
[2026-03-12 23:53:06] 2026-03-12 22:53:06,039 [wrapper] ==== pilot stdout END ====
[2026-03-12 23:53:06] 2026-03-12 22:53:06,041 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 23:53:06] 2026-03-12 22:53:06,043 [wrapper] pilotpid: 3181489
[2026-03-12 23:53:06] 2026-03-12 22:53:06,046 [wrapper] Pilot exit status: 0
[2026-03-12 23:53:06] 2026-03-12 22:53:06,053 [wrapper] pandaids: 7037090682
[2026-03-12 23:53:06] 2026-03-12 22:53:06,068 [wrapper] cleanup supervisor_pilot 3191404 3181490
[2026-03-12 23:53:06] 2026-03-12 22:53:06,070 [wrapper] Test setup, not cleaning
[2026-03-12 23:53:06] 2026-03-12 22:53:06,073 [wrapper] apfmon messages muted
[2026-03-12 23:53:06] 2026-03-12 22:53:06,075 [wrapper] ==== wrapper stdout END ====
[2026-03-12 23:53:06] 2026-03-12 22:53:06,077 [wrapper] ==== wrapper stderr END ====
[2026-03-12 23:53:06]  *** Error codes and diagnostics ***
[2026-03-12 23:53:06]     "exeErrorCode": 0,
[2026-03-12 23:53:06]     "exeErrorDiag": "",
[2026-03-12 23:53:06]     "pilotErrorCode": 0,
[2026-03-12 23:53:06]     "pilotErrorDiag": "",
[2026-03-12 23:53:06]  *** Listing of results directory ***
[2026-03-12 23:53:06] total 508768
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc    584627 Mar  4 02:58 pilot3.tar.gz
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc      5111 Mar  4 02:58 queuedata.json
[2026-03-12 23:53:06] -rwx------ 1 boinc boinc     36322 Mar  4 02:59 runpilot2-wrapper.sh
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc       100 Mar 12 22:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 23:53:06] -rwxr-xr-x 1 boinc boinc      7986 Mar 12 22:22 run_atlas
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc       105 Mar 12 22:22 job.xml
[2026-03-12 23:53:06] -rw-r--r-- 2 boinc boinc 300279964 Mar 12 22:22 EVNT.48717157._000041.pool.root.1
[2026-03-12 23:53:06] drwxrwx--x 2 boinc boinc      4096 Mar 12 22:22 shared
[2026-03-12 23:53:06] -rw-r--r-- 2 boinc boinc    597952 Mar 12 22:22 input.tar.gz
[2026-03-12 23:53:06] -rw-r--r-- 2 boinc boinc     15845 Mar 12 22:22 start_atlas.sh
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc         0 Mar 12 22:22 boinc_setup_complete
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc      6441 Mar 12 22:22 init_data.xml
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc         0 Mar 12 22:22 boinc_lockfile
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc      2595 Mar 12 22:22 pandaJob.out
[2026-03-12 23:53:06] -rw------- 1 boinc boinc   1006514 Mar 12 22:22 agis_schedconf.cvmfs.json
[2026-03-12 23:53:06] -rw------- 1 boinc boinc   1511578 Mar 12 22:22 agis_ddmendpoints.agis.ALL.json
[2026-03-12 23:53:06] -rw------- 1 boinc boinc       429 Mar 12 22:22 workernode_map.json
[2026-03-12 23:53:06] drwx------ 5 boinc boinc      4096 Mar 12 22:22 pilot3
[2026-03-12 23:53:06] -rw------- 1 boinc boinc 214683656 Mar 12 23:52 HITS.48878057._001014.pool.root.1
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc       529 Mar 12 23:52 boinc_task_state.xml
[2026-03-12 23:53:06] -rw------- 1 boinc boinc      1017 Mar 12 23:52 memory_monitor_summary.json
[2026-03-12 23:53:06] -rw------- 1 boinc boinc    258534 Mar 12 23:52 log.48878057._001014.job.log.tgz.1
[2026-03-12 23:53:06] -rw------- 1 boinc boinc      6313 Mar 12 23:52 heartbeat.json
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc      8192 Mar 12 23:52 boinc_mmap_file
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc        27 Mar 12 23:52 wrapper_checkpoint.txt
[2026-03-12 23:53:06] -rw------- 1 boinc boinc       747 Mar 12 23:53 pilotlog.txt
[2026-03-12 23:53:06] -rw------- 1 boinc boinc        95 Mar 12 23:53 pilot_heartbeat.json
[2026-03-12 23:53:06] -rw------- 1 boinc boinc    785725 Mar 12 23:53 log.48878057._001014.job.log.1
[2026-03-12 23:53:06] -rw------- 1 boinc boinc       357 Mar 12 23:53 output.list
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc       620 Mar 12 23:53 runtime_log
[2026-03-12 23:53:06] -rw------- 1 boinc boinc   1064960 Mar 12 23:53 result.tar.gz
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc      8906 Mar 12 23:53 runtime_log.err
[2026-03-12 23:53:06] -rw------- 1 boinc boinc       659 Mar 12 23:53 GftMDmXhqH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmWzILDmWb6tIn.diag
[2026-03-12 23:53:06] -rw-r--r-- 1 boinc boinc     11936 Mar 12 23:53 stderr.txt
[2026-03-12 23:53:06] HITS file was successfully produced:
[2026-03-12 23:53:06] -rw------- 1 boinc boinc 214683656 Mar 12 23:52 shared/HITS.pool.root.1
[2026-03-12 23:53:06]  *** Contents of shared directory: ***
[2026-03-12 23:53:06] total 504548
[2026-03-12 23:53:06] -rw-r--r-- 2 boinc boinc 300279964 Mar 12 22:22 ATLAS.root_0
[2026-03-12 23:53:06] -rw-r--r-- 2 boinc boinc    597952 Mar 12 22:22 input.tar.gz
[2026-03-12 23:53:06] -rw-r--r-- 2 boinc boinc     15845 Mar 12 22:22 start_atlas.sh
[2026-03-12 23:53:06] -rw------- 1 boinc boinc 214683656 Mar 12 23:52 HITS.pool.root.1
[2026-03-12 23:53:06] -rw------- 1 boinc boinc   1064960 Mar 12 23:53 result.tar.gz
23:53:07 (3177449): run_atlas exited; CPU time 15463.200575
23:53:07 (3177449): called boinc_finish(0)

</stderr_txt>
]]>

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