Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
01:53:26 (877858): wrapper (7.7.26015): starting
01:53:26 (877858): wrapper: running run_atlas (--nthreads 4)
[2026-03-12 01:53:26] Arguments: --nthreads 4
[2026-03-12 01:53:26] Threads: 4
[2026-03-12 01:53:26] Checking for CVMFS
[2026-03-12 01:53:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 01:53:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 01:53:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 01:53:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 01:53:28] 2.13.3.0 8639 2502 50292 157185 0 50 2755072 4096001 2748 130560 0 2068367 99.991 88172 1009 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-12 01:53:28] CVMFS is ok
[2026-03-12 01:53:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 01:53:28] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-12 01:53:28] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-12 01:53:28] Further information can be found at the LHC@home message board.
[2026-03-12 01:53:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 01:53:28] Checking for apptainer binary...
[2026-03-12 01:53:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-12 01:53:28] Running /usr/bin/apptainer --version
[2026-03-12 01:53:28] apptainer version 1.4.5
[2026-03-12 01:53:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 01:53:28] SETI64-Ubuntu
[2026-03-12 01:53:28] apptainer works
[2026-03-12 01:53:28] Set ATHENA_PROC_NUMBER=4
[2026-03-12 01:53:28] Set ATHENA_CORE_NUMBER=4
[2026-03-12 01:53:28] Starting ATLAS job with PandaID=7037041649
[2026-03-12 01:53:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/84 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 04:57:26]  *** The last 200 lines of the pilot log: ***
[2026-03-12 04:57:26] 2026-03-12 08:56:52,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,116 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 04:57:26] 2026-03-12 08:56:54,408 | INFO     | job 7037041649 has state=finished
[2026-03-12 04:57:26] 2026-03-12 08:56:54,408 | INFO     | preparing for final server update for job 7037041649 in state='finished'
[2026-03-12 04:57:26] 2026-03-12 08:56:54,409 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/84/PanDA_Pilot-7037041649/jobReport.json
[2026-03-12 04:57:26] 2026-03-12 08:56:54,410 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/84/workernode_map.json
[2026-03-12 04:57:26] 2026-03-12 08:56:54,410 | INFO     | this job has now completed (state=finished)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,411 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,411 | INFO     | log transfer has been attempted: DONE
[2026-03-12 04:57:26] 2026-03-12 08:56:54,411 | INFO     | job 7037041649 has finished - writing final server update
[2026-03-12 04:57:26] 2026-03-12 08:56:54,411 | INFO     | total number of processed events: 400 (read)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,426 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/84/PanDA_Pilot-7037041649/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,427 | INFO     | extracted standard info from prmon json
[2026-03-12 04:57:26] 2026-03-12 08:56:54,427 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 04:57:26] 2026-03-12 08:56:54,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 04:57:26] 2026-03-12 08:56:54,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 04:57:26] 2026-03-12 08:56:54,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 04:57:26] 2026-03-12 08:56:54,429 | INFO     | fitting pss+swap vs Time
[2026-03-12 04:57:26] 2026-03-12 08:56:54,430 | INFO     | sum of square deviations: 1808350185.0
[2026-03-12 04:57:26] 2026-03-12 08:56:54,431 | INFO     | sum of deviations: -7327881169.499997
[2026-03-12 04:57:26] 2026-03-12 08:56:54,431 | INFO     | mean x: 1773300311.5
[2026-03-12 04:57:26] 2026-03-12 08:56:54,431 | INFO     | mean y: 2355877.6277777776
[2026-03-12 04:57:26] 2026-03-12 08:56:54,431 | INFO     | intersect: 7188206310.965903
[2026-03-12 04:57:26] 2026-03-12 08:56:54,431 | INFO     | chi2: 1.5719520999687016
[2026-03-12 04:57:26] 2026-03-12 08:56:54,431 | INFO     | sum of square deviations: 1661798600.0
[2026-03-12 04:57:26] 2026-03-12 08:56:54,432 | INFO     | sum of deviations: -7007946082.000003
[2026-03-12 04:57:26] 2026-03-12 08:56:54,432 | INFO     | mean x: 1773300159.0
[2026-03-12 04:57:26] 2026-03-12 08:56:54,432 | INFO     | mean y: 2356208.702857143
[2026-03-12 04:57:26] 2026-03-12 08:56:54,432 | INFO     | intersect: 7480513851.556829
[2026-03-12 04:57:26] 2026-03-12 08:56:54,432 | INFO     | chi2: 1.5710709573800337
[2026-03-12 04:57:26] 2026-03-12 08:56:54,432 | INFO     | current chi2=1.5710709573800337 (change=0.056054035532344636 %)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,432 | INFO     | right removable region: 174
[2026-03-12 04:57:26] 2026-03-12 08:56:54,433 | INFO     | sum of square deviations: 1661798600.0
[2026-03-12 04:57:26] 2026-03-12 08:56:54,433 | INFO     | sum of deviations: -26918711898.999996
[2026-03-12 04:57:26] 2026-03-12 08:56:54,433 | INFO     | mean x: 1773300464.0
[2026-03-12 04:57:26] 2026-03-12 08:56:54,433 | INFO     | mean y: 2375877.537142857
[2026-03-12 04:57:26] 2026-03-12 08:56:54,433 | INFO     | intersect: 28727255234.625916
[2026-03-12 04:57:26] 2026-03-12 08:56:54,434 | INFO     | chi2: 0.26877206299632816
[2026-03-12 04:57:26] 2026-03-12 08:56:54,434 | INFO     | current chi2=0.26877206299632816 (change=82.90201953344001 %)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,434 | INFO     | sum of square deviations: 1523386702.5
[2026-03-12 04:57:26] 2026-03-12 08:56:54,434 | INFO     | sum of deviations: -18416345544.0
[2026-03-12 04:57:26] 2026-03-12 08:56:54,434 | INFO     | mean x: 1773300616.5
[2026-03-12 04:57:26] 2026-03-12 08:56:54,435 | INFO     | mean y: 2366496.2705882355
[2026-03-12 04:57:26] 2026-03-12 08:56:54,435 | INFO     | intersect: 21439941639.376595
[2026-03-12 04:57:26] 2026-03-12 08:56:54,435 | INFO     | chi2: 0.22007612651683583
[2026-03-12 04:57:26] 2026-03-12 08:56:54,435 | INFO     | current chi2=0.22007612651683583 (change=18.117930835749693 %)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,435 | INFO     | left removable region: 20
[2026-03-12 04:57:26] 2026-03-12 08:56:54,435 | INFO     | sum of square deviations: 1132458442.5
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | sum of deviations: 1036979077.0000007
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | mean x: 1773300738.5
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | mean y: 2342944.5194805195
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | intersect: -1621447999.1849723
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | chi2: 0.0009700930195193071
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | current memory leak: 0.92 B/s (using 154 data points, chi2=0.00)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | could have reported an average CPU frequency of 2468 MHz (10 samples)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | ..............................
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | . Timing measurements:
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | . get job = 0 s
[2026-03-12 04:57:26] 2026-03-12 08:56:54,436 | INFO     | . initial setup = 8 s
[2026-03-12 04:57:26] 2026-03-12 08:56:54,437 | INFO     | . payload setup = 7 s
[2026-03-12 04:57:26] 2026-03-12 08:56:54,437 | INFO     | . stage-in = 0 s
[2026-03-12 04:57:26] 2026-03-12 08:56:54,437 | INFO     | . payload execution = 10959 s
[2026-03-12 04:57:26] 2026-03-12 08:56:54,437 | INFO     | . stage-out = 2 s
[2026-03-12 04:57:26] 2026-03-12 08:56:54,437 | INFO     | . log creation = 0 s
[2026-03-12 04:57:26] 2026-03-12 08:56:54,437 | INFO     | ..............................
[2026-03-12 04:57:26] 2026-03-12 08:56:54,488 | INFO     | 
[2026-03-12 04:57:26] 2026-03-12 08:56:54,488 | INFO     | job summary report
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | --------------------------------------------------
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | PanDA job id: 7037041649
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | task id: 48838577
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | errors: (none)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | pilot state: finished 
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | transexitcode: 0
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | exeerrorcode: 0
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | exeerrordiag: 
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | exitcode: 0
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | exitmsg: OK
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | cpuconsumptiontime: 42412 s
[2026-03-12 04:57:26] 2026-03-12 08:56:54,489 | INFO     | nevents: 400
[2026-03-12 04:57:26] 2026-03-12 08:56:54,490 | INFO     | neventsw: 0
[2026-03-12 04:57:26] 2026-03-12 08:56:54,490 | INFO     | pid: 887411
[2026-03-12 04:57:26] 2026-03-12 08:56:54,490 | INFO     | pgrp: 887411
[2026-03-12 04:57:26] 2026-03-12 08:56:54,490 | INFO     | corecount: 4
[2026-03-12 04:57:26] 2026-03-12 08:56:54,490 | INFO     | event service: False
[2026-03-12 04:57:26] 2026-03-12 08:56:54,490 | INFO     | sizes: {0: 2279150, 1: 2280283, 12: 2280283, 10969: 2309393, 10970: 2309392, 10972: 2318476, 10974: 2318854}
[2026-03-12 04:57:26] 2026-03-12 08:56:54,490 | INFO     | --------------------------------------------------
[2026-03-12 04:57:26] 2026-03-12 08:56:54,490 | INFO     | 
[2026-03-12 04:57:26] 2026-03-12 08:56:54,490 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/84
[2026-03-12 04:57:26] 2026-03-12 08:56:54,518 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,518 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,518 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,518 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,519 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,519 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,519 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,519 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,520 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,520 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 04:57:26] 2026-03-12 08:56:54,520 | INFO     | job 7037041649 has completed (purged errors)
[2026-03-12 04:57:26] 2026-03-12 08:56:54,520 | INFO     | overall cleanup function is called
[2026-03-12 04:57:26] 2026-03-12 08:56:55,529 | INFO     | --- collectZombieJob: --- 10, [887411]
[2026-03-12 04:57:26] 2026-03-12 08:56:55,530 | INFO     | zombie collector waiting for pid 887411
[2026-03-12 04:57:26] 2026-03-12 08:56:55,530 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 04:57:26] 2026-03-12 08:56:55,530 | INFO     | collected zombie processes
[2026-03-12 04:57:26] 2026-03-12 08:56:55,530 | INFO     | will attempt to kill all subprocesses of pid=887411
[2026-03-12 04:57:26] 2026-03-12 08:56:55,991 | INFO     | process IDs to be killed: [887411] (in reverse order)
[2026-03-12 04:57:26] 2026-03-12 08:56:56,141 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 04:57:26] 2026-03-12 08:56:56,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 04:57:26] 2026-03-12 08:56:56,152 | INFO     | did not find any defunct processes belonging to 887411
[2026-03-12 04:57:26] 2026-03-12 08:56:56,161 | INFO     | did not find any defunct processes belonging to 887411
[2026-03-12 04:57:26] 2026-03-12 08:56:56,162 | INFO     | ready for new job
[2026-03-12 04:57:26] 2026-03-12 08:56:56,162 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 04:57:26] 2026-03-12 08:56:56,163 | INFO     | **************************************
[2026-03-12 04:57:26] 2026-03-12 08:56:56,164 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 04:57:26] 2026-03-12 08:56:56,164 | INFO     | **************************************
[2026-03-12 04:57:26] 2026-03-12 08:56:56,164 | INFO     | 
[2026-03-12 04:57:26] 2026-03-12 08:56:56,170 | INFO     | architecture information:
[2026-03-12 04:57:26] 2026-03-12 08:56:56,170 | INFO     | executing command: cat /etc/os-release
[2026-03-12 04:57:26] 2026-03-12 08:56:56,192 | INFO     | cat /etc/os-release:
[2026-03-12 04:57:26] NAME="CentOS Linux"
[2026-03-12 04:57:26] VERSION="7 (Core)"
[2026-03-12 04:57:26] ID="centos"
[2026-03-12 04:57:26] ID_LIKE="rhel fedora"
[2026-03-12 04:57:26] VERSION_ID="7"
[2026-03-12 04:57:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 04:57:26] ANSI_COLOR="0;31"
[2026-03-12 04:57:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 04:57:26] HOME_URL="https://www.centos.org/"
[2026-03-12 04:57:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 04:57:26] 
[2026-03-12 04:57:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 04:57:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 04:57:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 04:57:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 04:57:26] 
[2026-03-12 04:57:26] 2026-03-12 08:56:56,193 | INFO     | **************************************
[2026-03-12 04:57:26] 2026-03-12 08:56:56,694 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/84
[2026-03-12 04:57:26] 2026-03-12 08:56:56,716 | INFO     | sufficient remaining disk space (377702318080 B)
[2026-03-12 04:57:26] 2026-03-12 08:56:56,716 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 04:57:26] 2026-03-12 08:56:56,717 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 04:57:26] 2026-03-12 08:56:56,717 | INFO     | update_server=False
[2026-03-12 04:57:26] 2026-03-12 08:56:56,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 04:57:26] 2026-03-12 08:56:56,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 04:57:26] 2026-03-12 08:56:56,717 | INFO     | aborting loop
[2026-03-12 04:57:26] 2026-03-12 08:56:56,988 | INFO     | all data control threads have been joined
[2026-03-12 04:57:26] 2026-03-12 08:56:57,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 04:57:26] 2026-03-12 08:56:57,720 | INFO     | [job] retrieve thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:57,722 | INFO     | [job] job monitor thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:57,928 | INFO     | all payload control threads have been joined
[2026-03-12 04:57:26] 2026-03-12 08:56:57,994 | INFO     | [data] control thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:58,003 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:58,299 | INFO     | all job control threads have been joined
[2026-03-12 04:57:26] 2026-03-12 08:56:58,367 | INFO     | [job] validate thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:58,522 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:58,591 | INFO     | [payload] validate_post thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:58,729 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:58,929 | INFO     | [payload] control thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:58,973 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:58,974 | INFO     | [data] copytool_in thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:59,250 | INFO     | [payload] failed_post thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:59,304 | INFO     | [job] control thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:56:59,499 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 04:57:26] 2026-03-12 08:56:59,621 | INFO     | [data] copytool_out thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:57:00,218 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 04:57:26] 2026-03-12 08:57:00,505 | INFO     | [job] queue monitor thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:57:04,224 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 04:57:26] 2026-03-12 08:57:04,745 | INFO     | [monitor] cgroup control has ended
[2026-03-12 04:57:26] 2026-03-12 08:57:04,931 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133899755333440)>', '<ExcThread(monitor, started 133899254474496)>']
[2026-03-12 04:57:26] 2026-03-12 08:57:09,957 | INFO     | all workflow threads have been joined
[2026-03-12 04:57:26] 2026-03-12 08:57:09,957 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 04:57:26] 2026-03-12 08:57:09,957 | INFO     | traces error code: 0
[2026-03-12 04:57:26] 2026-03-12 08:57:09,957 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 04:57:26] 2026-03-12 08:57:26,212 | INFO     | PID=882422 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-12 04:57:26] 2026-03-12 08:57:26,213 | INFO     | .. there are 4 such processes running
[2026-03-12 04:57:26] 2026-03-12 08:57:26,213 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 04:57:26] 2026-03-12 08:57:26,213 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 04:57:26] 2026-03-12 08:57:26,213 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 04:57:26] 2026-03-12 08:57:26,213 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 04:57:26] 2026-03-12 08:57:26,213 | INFO     | [monitor] control thread has ended
[2026-03-12 04:57:26] 2026-03-12 08:57:26,371 [wrapper] ==== pilot stdout END ====
[2026-03-12 04:57:26] 2026-03-12 08:57:26,375 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 04:57:26] 2026-03-12 08:57:26,378 [wrapper] pilotpid: 882422
[2026-03-12 04:57:26] 2026-03-12 08:57:26,382 [wrapper] Pilot exit status: 0
[2026-03-12 04:57:26] 2026-03-12 08:57:26,399 [wrapper] pandaids: 7037041649
[2026-03-12 04:57:26] 2026-03-12 08:57:26,508 [wrapper] cleanup supervisor_pilot  946182 882423
[2026-03-12 04:57:26] 2026-03-12 08:57:26,512 [wrapper] Test setup, not cleaning
[2026-03-12 04:57:26] 2026-03-12 08:57:26,516 [wrapper] apfmon messages muted
[2026-03-12 04:57:26] 2026-03-12 08:57:26,519 [wrapper] ==== wrapper stdout END ====
[2026-03-12 04:57:26] 2026-03-12 08:57:26,524 [wrapper] ==== wrapper stderr END ====
[2026-03-12 04:57:26]  *** Error codes and diagnostics ***
[2026-03-12 04:57:26]     "exeErrorCode": 0,
[2026-03-12 04:57:26]     "exeErrorDiag": "",
[2026-03-12 04:57:26]     "pilotErrorCode": 0,
[2026-03-12 04:57:26]     "pilotErrorDiag": "",
[2026-03-12 04:57:26]  *** Listing of results directory ***
[2026-03-12 04:57:26] total 513088
[2026-03-12 04:57:26] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  3 20:08 pilot3.tar.gz
[2026-03-12 04:57:26] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  3 20:25 queuedata.json
[2026-03-12 04:57:26] -rwx------ 1 whitlerd whitlerd     36322 Mar  3 20:25 runpilot2-wrapper.sh
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar 12 01:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 04:57:26] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar 12 01:53 run_atlas
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar 12 01:53 job.xml
[2026-03-12 04:57:26] -rw-r--r-- 2 whitlerd whitlerd 288770566 Mar 12 01:53 EVNT.48220197._000373.pool.root.1
[2026-03-12 04:57:26] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 12 01:53 start_atlas.sh
[2026-03-12 04:57:26] drwxrwx--x 2 whitlerd whitlerd      4096 Mar 12 01:53 shared
[2026-03-12 04:57:26] -rw-r--r-- 2 whitlerd whitlerd    597964 Mar 12 01:53 input.tar.gz
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd      9566 Mar 12 01:53 init_data.xml
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 12 01:53 boinc_setup_complete
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 12 01:53 boinc_lockfile
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd      2567 Mar 12 01:53 pandaJob.out
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd   1006243 Mar 12 01:53 agis_schedconf.cvmfs.json
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd       424 Mar 12 01:53 workernode_map.json
[2026-03-12 04:57:26] drwx------ 5 whitlerd whitlerd      4096 Mar 12 01:53 pilot3
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd 228899330 Mar 12 04:56 HITS.48838577._009394.pool.root.1
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd       530 Mar 12 04:56 boinc_task_state.xml
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd        95 Mar 12 04:56 pilot_heartbeat.json
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd      1035 Mar 12 04:56 memory_monitor_summary.json
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd   1511578 Mar 12 04:56 agis_ddmendpoints.agis.ALL.json
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd    355789 Mar 12 04:56 log.48838577._009394.job.log.tgz.1
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd      6288 Mar 12 04:56 heartbeat.json
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar 12 04:57 boinc_mmap_file
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar 12 04:57 wrapper_checkpoint.txt
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd       821 Mar 12 04:57 pilotlog.txt
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd   1542777 Mar 12 04:57 log.48838577._009394.job.log.1
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd       357 Mar 12 04:57 output.list
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar 12 04:57 runtime_log
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd   1914880 Mar 12 04:57 result.tar.gz
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd      9041 Mar 12 04:57 runtime_log.err
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd       650 Mar 12 04:57 KKqLDmpAqH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmGvILDmmBN0Lm.diag
[2026-03-12 04:57:26] -rw-rw-r-- 1 whitlerd whitlerd     21436 Mar 12 04:57 stderr.txt
[2026-03-12 04:57:26] HITS file was successfully produced:
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd 228899330 Mar 12 04:56 shared/HITS.pool.root.1
[2026-03-12 04:57:26]  *** Contents of shared directory: ***
[2026-03-12 04:57:26] total 508020
[2026-03-12 04:57:26] -rw-r--r-- 2 whitlerd whitlerd 288770566 Mar 12 01:53 ATLAS.root_0
[2026-03-12 04:57:26] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 12 01:53 start_atlas.sh
[2026-03-12 04:57:26] -rw-r--r-- 2 whitlerd whitlerd    597964 Mar 12 01:53 input.tar.gz
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd 228899330 Mar 12 04:56 HITS.pool.root.1
[2026-03-12 04:57:26] -rw------- 1 whitlerd whitlerd   1914880 Mar 12 04:57 result.tar.gz
04:57:27 (877858): run_atlas exited; CPU time 42967.761357
04:57:27 (877858): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN