Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:52:40 (3082297): wrapper (7.7.26015): starting
13:52:40 (3082297): wrapper: running run_atlas (--nthreads 8)
[2026-03-12 13:52:40] Arguments: --nthreads 8
[2026-03-12 13:52:40] Threads: 8
[2026-03-12 13:52:40] Checking for CVMFS
[2026-03-12 13:52:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-12 13:52:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-12 13:52:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-12 13:52:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-12 13:52:41] 2.13.3.0 2956844 21345 56460 157201 2 50 3539874 4097025 0 130560 0 10982497 99.986 795486 22646 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2026-03-12 13:52:41] CVMFS is ok
[2026-03-12 13:52:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-12 13:52:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-12 13:52:41] Further information can be found at the LHC@home message board.
[2026-03-12 13:52:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-12 13:52:41] Checking for apptainer binary...
[2026-03-12 13:52:41] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2026-03-12 13:52:41] apptainer is not installed, using version from CVMFS
[2026-03-12 13:52:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-12 13:52:41] pckeatlas02
[2026-03-12 13:52:41] apptainer works
[2026-03-12 13:52:41] Set ATHENA_PROC_NUMBER=8
[2026-03-12 13:52:41] Set ATHENA_CORE_NUMBER=8
[2026-03-12 13:52:41] Starting ATLAS job with PandaID=7036983589
[2026-03-12 13:52:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-12 15:29:03]  *** The last 200 lines of the pilot log: ***
[2026-03-12 15:29:03]  domain=
[2026-03-12 15:29:03]  filesize=333247
[2026-03-12 15:29:03]  filetype=log
[2026-03-12 15:29:03]  guid=ebe699a1-aab5-4a6f-8e9c-52596a6eb394
[2026-03-12 15:29:03]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-12 15:29:03]  is_altstaged=None
[2026-03-12 15:29:03]  is_tar=False
[2026-03-12 15:29:03]  lfn=log.48838586._004229.job.log.tgz.1
[2026-03-12 15:29:03]  mtime=0
[2026-03-12 15:29:03]  protocol_id=None
[2026-03-12 15:29:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-12 15:29:03]  replicas=None
[2026-03-12 15:29:03]  scope=mc23_13p6TeV
[2026-03-12 15:29:03]  status=None
[2026-03-12 15:29:03]  status_code=0
[2026-03-12 15:29:03]  storage_token=
[2026-03-12 15:29:03]  surl=/var/lib/boinc/slots/19/PanDA_Pilot-7036983589/log.48838586._004229.job.log.tgz.1
[2026-03-12 15:29:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/5a/log.48838586._004229.job.log.tgz.1
[2026-03-12 15:29:03]  workdir=None
[2026-03-12 15:29:03] ]
[2026-03-12 15:29:03] 2026-03-12 14:28:01,682 | INFO     | transferring file log.48838586._004229.job.log.tgz.1 from /var/lib/boinc/slots/19/PanDA_Pilot-7036983589/log.48838586._004229.job.log.tgz.1 to /var/lib/boinc/slots
[2026-03-12 15:29:03] 2026-03-12 14:28:01,682 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/19/PanDA_Pilot-7036983589/log.48838586._004229.job.log.tgz.1 /var/lib/boinc/slots/19/log.48838586._004229.j
[2026-03-12 15:29:03] 2026-03-12 14:28:01,690 | INFO     | adding to output.list: log.48838586._004229.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/5a/log.48838586._004229.job.log.tg
[2026-03-12 15:29:03] 2026-03-12 14:28:01,690 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-12 15:29:03] 2026-03-12 14:28:01,690 | INFO     | summary of transferred files:
[2026-03-12 15:29:03] 2026-03-12 14:28:01,690 | INFO     |  -- lfn=log.48838586._004229.job.log.tgz.1, status_code=0, status=transferred
[2026-03-12 15:29:03] 2026-03-12 14:28:01,690 | INFO     | stage-out finished correctly
[2026-03-12 15:29:03] 2026-03-12 14:28:02,176 | INFO     | time since job start (5714s) is within the limit (349056.0s)
[2026-03-12 15:29:03] 2026-03-12 14:28:03,499 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-12 15:29:03] 2026-03-12 14:28:03,559 | INFO     | monitor loop #439: job 0:7036983589 is in state 'finished'
[2026-03-12 15:29:03] 2026-03-12 14:28:03,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-12 15:29:03] 2026-03-12 14:28:04,181 | INFO     | time since job start (5716s) is within the limit (349056.0s)
[2026-03-12 15:29:03] 2026-03-12 14:28:05,648 | INFO     | job 7036983589 has state=finished
[2026-03-12 15:29:03] 2026-03-12 14:28:05,648 | INFO     | preparing for final server update for job 7036983589 in state='finished'
[2026-03-12 15:29:03] 2026-03-12 14:28:05,648 | INFO     | reading metadata from: /var/lib/boinc/slots/19/PanDA_Pilot-7036983589/jobReport.json
[2026-03-12 15:29:03] 2026-03-12 14:28:05,649 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/19/workernode_map.json
[2026-03-12 15:29:03] 2026-03-12 14:28:05,649 | INFO     | this job has now completed (state=finished)
[2026-03-12 15:29:03] 2026-03-12 14:28:05,649 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-12 15:29:03] 2026-03-12 14:28:05,649 | INFO     | log transfer has been attempted: DONE
[2026-03-12 15:29:03] 2026-03-12 14:28:05,649 | INFO     | job 7036983589 has finished - writing final server update
[2026-03-12 15:29:03] 2026-03-12 14:28:05,649 | INFO     | total number of processed events: 400 (read)
[2026-03-12 15:29:03] 2026-03-12 14:28:05,650 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-7036983589/memory_monitor_summary.json (trf name=prmon)
[2026-03-12 15:29:03] 2026-03-12 14:28:05,650 | INFO     | extracted standard info from prmon json
[2026-03-12 15:29:03] 2026-03-12 14:28:05,650 | INFO     | extracted standard memory fields from prmon json
[2026-03-12 15:29:03] 2026-03-12 14:28:05,650 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-12 15:29:03] 2026-03-12 14:28:05,651 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-12 15:29:03] 2026-03-12 14:28:05,651 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-12 15:29:03] 2026-03-12 14:28:05,651 | INFO     | fitting pss+swap vs Time
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | sum of square deviations: 204163828.0
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | sum of deviations: -13803674017.999998
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | mean x: 1773322912.0
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | mean y: 2669060.356321839
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | intersect: 119898400080.3414
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | chi2: 0.1618429607998634
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | current memory leak: -67.61 B/s (using 87 data points, chi2=0.16)
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | could have reported an average CPU frequency of 3875 MHz (7 samples)
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | ..............................
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | . Timing measurements:
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | . get job = 0 s
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | . initial setup = 2 s
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | . payload setup = 3 s
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | . stage-in = 0 s
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | . payload execution = 5694 s
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | . stage-out = 0 s
[2026-03-12 15:29:03] 2026-03-12 14:28:05,652 | INFO     | . log creation = 0 s
[2026-03-12 15:29:03] 2026-03-12 14:28:05,653 | INFO     | ..............................
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | 
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | job summary report
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | --------------------------------------------------
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | PanDA job id: 7036983589
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | task id: 48838586
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | errors: (none)
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | pilot state: finished 
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | transexitcode: 0
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | exeerrorcode: 0
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | exeerrordiag: 
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | exitcode: 0
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | exitmsg: OK
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | cpuconsumptiontime: 42475 s
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | nevents: 400
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | neventsw: 0
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | pid: 3091589
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | pgrp: 3091589
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | corecount: 8
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | event service: False
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | sizes: {0: 2280186, 11: 2280186, 5701: 2306957, 5703: 2315957, 5704: 2316013, 5706: 2316207}
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | --------------------------------------------------
[2026-03-12 15:29:03] 2026-03-12 14:28:05,687 | INFO     | 
[2026-03-12 15:29:03] 2026-03-12 14:28:05,688 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2026-03-12 15:29:03] 2026-03-12 14:28:05,695 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | job 7036983589 has completed (purged errors)
[2026-03-12 15:29:03] 2026-03-12 14:28:05,696 | INFO     | overall cleanup function is called
[2026-03-12 15:29:03] 2026-03-12 14:28:06,702 | INFO     | --- collectZombieJob: --- 10, [3091589]
[2026-03-12 15:29:03] 2026-03-12 14:28:06,703 | INFO     | zombie collector waiting for pid 3091589
[2026-03-12 15:29:03] 2026-03-12 14:28:06,703 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-12 15:29:03] 2026-03-12 14:28:06,703 | INFO     | collected zombie processes
[2026-03-12 15:29:03] 2026-03-12 14:28:06,703 | INFO     | will attempt to kill all subprocesses of pid=3091589
[2026-03-12 15:29:03] 2026-03-12 14:28:06,735 | INFO     | process IDs to be killed: [3091589] (in reverse order)
[2026-03-12 15:29:03] 2026-03-12 14:28:06,752 | WARNING  | found no corresponding commands to process id(s)
[2026-03-12 15:29:03] 2026-03-12 14:28:06,752 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-12 15:29:03] 2026-03-12 14:28:06,753 | INFO     | did not find any defunct processes belonging to 3091589
[2026-03-12 15:29:03] 2026-03-12 14:28:06,754 | INFO     | did not find any defunct processes belonging to 3091589
[2026-03-12 15:29:03] 2026-03-12 14:28:06,754 | INFO     | ready for new job
[2026-03-12 15:29:03] 2026-03-12 14:28:06,754 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-12 15:29:03] 2026-03-12 14:28:06,754 | INFO     | **************************************
[2026-03-12 15:29:03] 2026-03-12 14:28:06,754 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-12 15:29:03] 2026-03-12 14:28:06,755 | INFO     | **************************************
[2026-03-12 15:29:03] 2026-03-12 14:28:06,755 | INFO     | 
[2026-03-12 15:29:03] 2026-03-12 14:28:06,755 | INFO     | architecture information:
[2026-03-12 15:29:03] 2026-03-12 14:28:06,755 | INFO     | executing command: cat /etc/os-release
[2026-03-12 15:29:03] 2026-03-12 14:28:06,761 | INFO     | cat /etc/os-release:
[2026-03-12 15:29:03] NAME="CentOS Linux"
[2026-03-12 15:29:03] VERSION="7 (Core)"
[2026-03-12 15:29:03] ID="centos"
[2026-03-12 15:29:03] ID_LIKE="rhel fedora"
[2026-03-12 15:29:03] VERSION_ID="7"
[2026-03-12 15:29:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-12 15:29:03] ANSI_COLOR="0;31"
[2026-03-12 15:29:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-12 15:29:03] HOME_URL="https://www.centos.org/"
[2026-03-12 15:29:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-12 15:29:03] 
[2026-03-12 15:29:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-12 15:29:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-12 15:29:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-12 15:29:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-12 15:29:03] 
[2026-03-12 15:29:03] 2026-03-12 14:28:06,761 | INFO     | **************************************
[2026-03-12 15:29:03] 2026-03-12 14:28:07,264 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2026-03-12 15:29:03] 2026-03-12 14:28:07,270 | INFO     | sufficient remaining disk space (112726114304 B)
[2026-03-12 15:29:03] 2026-03-12 14:28:07,271 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-12 15:29:03] 2026-03-12 14:28:07,271 | INFO     | current server update state: UPDATING_FINAL
[2026-03-12 15:29:03] 2026-03-12 14:28:07,271 | INFO     | update_server=False
[2026-03-12 15:29:03] 2026-03-12 14:28:07,271 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-12 15:29:03] 2026-03-12 14:28:07,271 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-12 15:29:03] 2026-03-12 14:28:07,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-12 15:29:03] 2026-03-12 14:28:07,271 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-12 15:29:03] 2026-03-12 14:28:07,271 | INFO     | aborting loop
[2026-03-12 15:29:03] 2026-03-12 14:28:07,377 | INFO     | all data control threads have been joined
[2026-03-12 15:29:03] 2026-03-12 14:28:07,441 | INFO     | all job control threads have been joined
[2026-03-12 15:29:03] 2026-03-12 14:28:07,794 | INFO     | all payload control threads have been joined
[2026-03-12 15:29:03] 2026-03-12 14:28:08,276 | INFO     | [job] retrieve thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:08,276 | INFO     | [job] queue monitor thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:08,276 | INFO     | [job] job monitor thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:08,383 | INFO     | [data] control thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:08,385 | INFO     | [payload] failed_post thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:08,446 | INFO     | [job] control thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:08,714 | INFO     | [payload] execute_payloads thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:08,800 | INFO     | [payload] control thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:08,894 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:09,173 | INFO     | [job] validate thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:09,245 | INFO     | [payload] validate_post thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:09,277 | INFO     | [data] copytool_out thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:09,302 | INFO     | [payload] validate_pre thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:09,308 | INFO     | [job] create_data_payload thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:09,427 | INFO     | [data] copytool_in thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:09,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-12 15:29:03] 2026-03-12 14:28:13,544 | INFO     | [data] queue_monitor thread has finished
[2026-03-12 15:29:03] 2026-03-12 14:28:37,313 | INFO     | PID=3086384 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-12 15:29:03] 2026-03-12 14:28:37,313 | INFO     | found 0 job(s) in 20 queues
[2026-03-12 15:29:03] 2026-03-12 14:28:37,313 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-12 15:29:03] 2026-03-12 14:28:37,313 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-12 15:29:03] 2026-03-12 14:28:56,911 | INFO     | [monitor] cgroup control has ended
[2026-03-12 15:29:03] 2026-03-12 14:28:58,219 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943757367104)>', '<ExcThread(monitor, started 139943338809088)>']
[2026-03-12 15:29:03] 2026-03-12 14:28:58,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-12 15:29:03] 2026-03-12 14:28:58,421 | INFO     | [monitor] control thread has ended
[2026-03-12 15:29:03] 2026-03-12 14:29:03,234 | INFO     | all workflow threads have been joined
[2026-03-12 15:29:03] 2026-03-12 14:29:03,234 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-12 15:29:03] 2026-03-12 14:29:03,234 | INFO     | traces error code: 0
[2026-03-12 15:29:03] 2026-03-12 14:29:03,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-12 15:29:03] 2026-03-12 14:29:03,300 [wrapper] ==== pilot stdout END ====
[2026-03-12 15:29:03] 2026-03-12 14:29:03,302 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-12 15:29:03] 2026-03-12 14:29:03,303 [wrapper] pilotpid: 3086384
[2026-03-12 15:29:03] 2026-03-12 14:29:03,304 [wrapper] Pilot exit status: 0
[2026-03-12 15:29:03] 2026-03-12 14:29:03,309 [wrapper] pandaids: 7036983589
[2026-03-12 15:29:03] 2026-03-12 14:29:03,319 [wrapper] cleanup supervisor_pilot 3101740 3086385
[2026-03-12 15:29:03] 2026-03-12 14:29:03,320 [wrapper] Test setup, not cleaning
[2026-03-12 15:29:03] 2026-03-12 14:29:03,321 [wrapper] apfmon messages muted
[2026-03-12 15:29:03] 2026-03-12 14:29:03,322 [wrapper] ==== wrapper stdout END ====
[2026-03-12 15:29:03] 2026-03-12 14:29:03,323 [wrapper] ==== wrapper stderr END ====
[2026-03-12 15:29:03]  *** Error codes and diagnostics ***
[2026-03-12 15:29:03]     "exeErrorCode": 0,
[2026-03-12 15:29:03]     "exeErrorDiag": "",
[2026-03-12 15:29:03]     "pilotErrorCode": 0,
[2026-03-12 15:29:03]     "pilotErrorDiag": "",
[2026-03-12 15:29:03]  *** Listing of results directory ***
[2026-03-12 15:29:03] total 482328
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc    584627 Mar  4 02:08 pilot3.tar.gz
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc      5111 Mar  4 02:25 queuedata.json
[2026-03-12 15:29:03] -rwx------. 1 boinc boinc     36322 Mar  4 02:25 runpilot2-wrapper.sh
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc       100 Mar 12 13:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-12 15:29:03] -rwxr-xr-x. 1 boinc boinc      7986 Mar 12 13:52 run_atlas
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc       105 Mar 12 13:52 job.xml
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc      6274 Mar 12 13:52 init_data.xml
[2026-03-12 15:29:03] -rw-r--r--. 2 boinc boinc 276710287 Mar 12 13:52 EVNT.48220221._000171.pool.root.1
[2026-03-12 15:29:03] -rw-r--r--. 2 boinc boinc     15845 Mar 12 13:52 start_atlas.sh
[2026-03-12 15:29:03] drwxrwx--x. 2 boinc boinc        68 Mar 12 13:52 shared
[2026-03-12 15:29:03] -rw-r--r--. 2 boinc boinc    597958 Mar 12 13:52 input.tar.gz
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc         0 Mar 12 13:52 boinc_lockfile
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc      2562 Mar 12 13:52 pandaJob.out
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc   1006233 Mar 12 13:52 agis_schedconf.cvmfs.json
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc   1511578 Mar 12 13:52 agis_ddmendpoints.agis.ALL.json
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc       428 Mar 12 13:52 workernode_map.json
[2026-03-12 15:29:03] drwx------. 5 boinc boinc      4096 Mar 12 13:52 pilot3
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc 210948086 Mar 12 15:27 HITS.48838586._004229.pool.root.1
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc      1014 Mar 12 15:27 memory_monitor_summary.json
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc    333247 Mar 12 15:28 log.48838586._004229.job.log.tgz.1
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc       529 Mar 12 15:28 boinc_task_state.xml
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc      6328 Mar 12 15:28 heartbeat.json
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc      8192 Mar 12 15:28 boinc_mmap_file
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc        27 Mar 12 15:28 wrapper_checkpoint.txt
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc        95 Mar 12 15:28 pilot_heartbeat.json
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc      4746 Mar 12 15:29 pilotlog.txt
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc    830525 Mar 12 15:29 log.48838586._004229.job.log.1
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc       357 Mar 12 15:29 output.list
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc       620 Mar 12 15:29 runtime_log
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc   1177600 Mar 12 15:29 result.tar.gz
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc       650 Mar 12 15:29 VtKODmgAqH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm6tILDmYXIFWn.diag
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc      8845 Mar 12 15:29 runtime_log.err
[2026-03-12 15:29:03] -rw-r--r--. 1 boinc boinc     21244 Mar 12 15:29 stderr.txt
[2026-03-12 15:29:03] HITS file was successfully produced:
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc 210948086 Mar 12 15:27 shared/HITS.pool.root.1
[2026-03-12 15:29:03]  *** Contents of shared directory: ***
[2026-03-12 15:29:03] total 477984
[2026-03-12 15:29:03] -rw-r--r--. 2 boinc boinc 276710287 Mar 12 13:52 ATLAS.root_0
[2026-03-12 15:29:03] -rw-r--r--. 2 boinc boinc     15845 Mar 12 13:52 start_atlas.sh
[2026-03-12 15:29:03] -rw-r--r--. 2 boinc boinc    597958 Mar 12 13:52 input.tar.gz
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc 210948086 Mar 12 15:27 HITS.pool.root.1
[2026-03-12 15:29:03] -rw-------. 1 boinc boinc   1177600 Mar 12 15:29 result.tar.gz
15:29:04 (3082297): run_atlas exited; CPU time 42514.831817
15:29:04 (3082297): called boinc_finish(0)

</stderr_txt>
]]>

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